Wall clock time and date at job start Wed Apr 1 2020 05:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42907 * 109.47188 * 2 1 4 4 C 1.35678 * 116.99944 * 179.97438 * 3 2 1 5 5 C 1.38898 * 119.62261 * 180.30275 * 4 3 2 6 6 C 1.39571 * 118.94395 * 180.22580 * 5 4 3 7 7 C 1.48163 * 120.88961 * 179.75082 * 6 5 4 8 8 O 1.21517 * 119.99969 * 6.10208 * 7 6 5 9 9 N 1.34775 * 120.00198 * 186.09752 * 7 6 5 10 10 C 1.46497 * 120.00171 * 185.22075 * 9 7 6 11 11 H 1.08992 * 109.18368 * 53.04991 * 10 9 7 12 12 C 1.57471 * 108.71086 * 293.24124 * 10 9 7 13 13 C 1.53971 * 108.07584 * 294.31785 * 12 10 9 14 14 H 1.08998 * 112.99495 * 169.26786 * 13 12 10 15 15 C 1.55428 * 107.20167 * 294.65273 * 13 12 10 16 16 C 1.55170 * 100.35063 * 73.66178 * 15 13 12 17 17 H 1.09000 * 112.48422 * 162.66728 * 16 15 13 18 18 C 1.52987 * 109.32538 * 172.60711 * 10 9 7 19 19 N 1.47791 * 104.25597 * 40.54977 * 16 15 13 20 20 C 1.36935 * 125.85575 * 153.50673 * 19 16 15 21 21 H 1.08002 * 120.00391 * 154.72653 * 20 19 16 22 22 C 1.38821 * 119.99942 * 334.71903 * 20 19 16 23 23 N 1.31617 * 119.99809 * 161.50132 * 22 20 19 24 24 Si 1.86795 * 120.00092 * 341.50044 * 22 20 19 25 25 H 1.48500 * 109.47149 * 89.73292 * 24 22 20 26 26 H 1.48497 * 109.47016 * 209.73285 * 24 22 20 27 27 H 1.48508 * 109.47058 * 329.73345 * 24 22 20 28 28 C 1.47076 * 108.28873 * 333.53910 * 19 16 15 29 29 C 1.39964 * 118.22085 * 359.48406 * 6 5 4 30 30 C 1.37975 * 119.13305 * 0.27420 * 29 6 5 31 31 N 1.31912 * 120.97966 * 359.97438 * 30 29 6 32 32 H 1.09006 * 109.46691 * 59.99842 * 1 2 3 33 33 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47348 * 300.00450 * 1 2 3 35 35 H 1.09000 * 109.47247 * 240.00305 * 2 1 3 36 36 H 1.08994 * 109.47371 * 120.00207 * 2 1 3 37 37 H 1.07994 * 120.52400 * 359.97438 * 5 4 3 38 38 H 0.97004 * 119.99950 * 5.21842 * 9 7 6 39 39 H 1.08998 * 109.73610 * 174.87457 * 12 10 9 40 40 H 1.08997 * 110.16134 * 54.00745 * 12 10 9 41 41 H 1.09006 * 111.23566 * 191.43519 * 15 13 12 42 42 H 1.09000 * 111.23797 * 315.88768 * 15 13 12 43 43 H 1.08998 * 109.53542 * 305.28331 * 18 10 9 44 44 H 1.09001 * 109.53218 * 185.05743 * 18 10 9 45 45 H 0.96998 * 120.00264 * 180.02562 * 23 22 20 46 46 H 1.08995 * 109.98087 * 241.74081 * 28 19 16 47 47 H 1.09005 * 109.97987 * 120.45741 * 28 19 16 48 48 H 1.07996 * 120.43430 * 180.24752 * 29 6 5 49 49 H 1.07998 * 119.51242 * 180.02562 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3514 1.5251 0.0005 5 6 3.8739 2.8120 0.0069 6 6 5.2596 2.9785 0.0026 7 6 5.8632 4.3316 0.0036 8 8 5.1555 5.3125 0.1201 9 7 7.1972 4.4746 -0.1246 10 6 7.8061 5.8020 -0.0092 11 1 7.4861 6.2628 0.9252 12 6 7.3350 6.6815 -1.2274 13 6 7.9157 6.0661 -2.5138 14 1 7.4923 6.4972 -3.4209 15 6 9.4616 6.2067 -2.4334 16 6 9.7857 5.1195 -1.3747 17 1 10.8379 4.8352 -1.3778 18 6 9.3296 5.6619 -0.0087 19 7 8.8956 3.9931 -1.7254 20 6 9.1291 2.6715 -1.4535 21 1 8.3011 1.9838 -1.3649 22 6 10.4303 2.2155 -1.2919 23 7 10.6554 1.0692 -0.6857 24 14 11.8617 3.2289 -1.9348 25 1 12.3175 4.1678 -0.8784 26 1 12.9790 2.3254 -2.3097 27 1 11.4266 3.9994 -3.1275 28 6 7.7162 4.5349 -2.4173 29 6 6.0639 1.8330 0.0030 30 6 5.4634 0.5907 0.0019 31 7 4.1497 0.4715 0.0010 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8899 37 1 3.2183 3.6702 0.0111 38 1 7.7542 3.6985 -0.2933 39 1 7.7048 7.7002 -1.1108 40 1 6.2467 6.6903 -1.2858 41 1 9.9292 5.9771 -3.3909 42 1 9.7502 7.1976 -2.0829 43 1 9.6317 4.9701 0.7775 44 1 9.7851 6.6364 0.1670 45 1 11.5646 0.7507 -0.5724 46 1 6.8147 4.3122 -1.8468 47 1 7.6406 4.1055 -3.4164 48 1 7.1403 1.9203 0.0038 49 1 6.0781 -0.2973 0.0027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047144895.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:36 Heat of formation + Delta-G solvation = 30.681843 kcal Electronic energy + Delta-G solvation = -32278.486406 eV Core-core repulsion = 28208.281569 eV Total energy + Delta-G solvation = -4070.204837 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.55471 -41.58895 -39.81592 -38.77558 -35.43250 -35.02460 -33.75860 -33.09561 -32.77517 -32.28770 -30.88362 -29.66803 -27.24188 -26.10368 -24.67443 -24.37347 -24.02396 -23.04806 -21.79953 -21.58189 -20.68762 -19.69783 -18.52454 -18.41358 -17.79453 -17.43064 -17.32137 -16.88769 -16.44779 -16.29116 -15.92269 -15.34838 -15.23845 -14.91891 -14.89015 -14.83061 -14.66682 -14.34302 -14.04506 -13.79580 -13.60520 -13.44136 -13.35802 -13.29084 -12.98353 -12.94749 -12.88288 -12.64376 -12.47317 -12.42626 -11.95557 -11.73106 -11.63753 -11.50087 -11.24138 -11.21081 -11.03523 -10.92955 -10.68756 -10.49790 -9.61931 -9.38173 -8.90379 -8.17199 -5.49691 -0.39331 0.06282 1.28577 1.43398 1.50161 1.82219 1.84632 2.39561 2.42024 2.74965 3.08730 3.22908 3.26555 3.61300 3.70676 3.81803 3.86748 3.91406 3.95144 4.08675 4.10021 4.18536 4.20437 4.24819 4.29133 4.45322 4.47551 4.59814 4.66351 4.74175 4.78099 4.82486 4.84999 4.92127 4.96510 4.99983 5.02059 5.06095 5.13606 5.17418 5.19511 5.30594 5.35883 5.38833 5.42247 5.69534 5.77306 6.13095 6.16640 6.67137 6.76021 6.77605 7.28039 7.53339 8.13798 9.00064 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014257 B = 0.003805 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.499600 B = 7357.346924 C = 8725.863572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.058 3.942 3 O -0.313 6.313 4 C 0.309 3.691 5 C -0.142 4.142 6 C -0.061 4.061 7 C 0.542 3.458 8 O -0.569 6.569 9 N -0.691 5.691 10 C 0.153 3.847 11 H 0.075 0.925 12 C -0.114 4.114 13 C -0.093 4.093 14 H 0.105 0.895 15 C -0.121 4.121 16 C 0.119 3.881 17 H 0.051 0.949 18 C -0.132 4.132 19 N -0.612 5.612 20 C -0.254 4.254 21 H 0.086 0.914 22 C -0.012 4.012 23 N -0.937 5.937 24 Si 0.937 3.063 25 H -0.272 1.272 26 H -0.321 1.321 27 H -0.268 1.268 28 C 0.103 3.897 29 C -0.178 4.178 30 C 0.141 3.859 31 N -0.529 5.529 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.152 0.848 38 H 0.430 0.570 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.106 0.894 43 H 0.052 0.948 44 H 0.106 0.894 45 H 0.263 0.737 46 H 0.057 0.943 47 H 0.006 0.994 48 H 0.145 0.855 49 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.987 5.379 0.804 12.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.016 4.016 3 O -0.221 6.221 4 C 0.130 3.870 5 C -0.164 4.164 6 C -0.072 4.072 7 C 0.328 3.672 8 O -0.450 6.450 9 N -0.354 5.354 10 C 0.049 3.951 11 H 0.093 0.907 12 C -0.152 4.152 13 C -0.111 4.111 14 H 0.123 0.877 15 C -0.159 4.159 16 C 0.014 3.986 17 H 0.068 0.932 18 C -0.172 4.172 19 N -0.339 5.339 20 C -0.381 4.381 21 H 0.103 0.897 22 C -0.210 4.210 23 N -0.581 5.581 24 Si 0.770 3.230 25 H -0.200 1.200 26 H -0.251 1.251 27 H -0.194 1.194 28 C -0.021 4.021 29 C -0.199 4.199 30 C -0.014 4.014 31 N -0.254 5.254 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.170 0.830 38 H 0.283 0.717 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.124 0.876 43 H 0.071 0.929 44 H 0.124 0.876 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.024 0.976 48 H 0.162 0.838 49 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -11.903 5.170 0.959 13.013 hybrid contribution 1.901 -0.071 -0.458 1.957 sum -10.002 5.099 0.501 11.238 Atomic orbital electron populations 1.21836 0.90727 1.04355 1.03398 1.22868 0.96456 0.79841 1.02469 1.86233 1.15751 1.32383 1.87759 1.19696 0.84765 0.89438 0.93103 1.21078 0.94225 0.96569 1.04488 1.20264 0.93551 0.94131 0.99218 1.18247 0.83474 0.87867 0.77565 1.90663 1.62268 1.39877 1.52227 1.47614 1.06753 1.13780 1.67257 1.21754 0.92345 0.82545 0.98470 0.90716 1.22790 1.00810 0.98934 0.92684 1.22533 0.95634 0.94149 0.98820 0.87731 1.23024 0.95626 0.99039 0.98223 1.22169 0.93666 0.88178 0.94549 0.93196 1.22360 0.94138 1.02368 0.98295 1.45300 1.21520 1.01794 1.65311 1.18720 0.92804 0.84010 1.42603 0.89671 1.25616 0.99358 0.96642 0.99340 1.69846 1.21142 1.23057 1.44059 0.86019 0.79782 0.77341 0.79827 1.19982 1.25080 1.19366 1.22368 0.91846 0.93732 0.94163 1.22592 1.02249 0.93010 1.02061 1.22705 0.88711 0.97887 0.92059 1.67282 1.06888 1.33114 1.18098 0.91592 0.88014 0.91499 0.91801 0.91643 0.82985 0.71750 0.88453 0.91571 0.92351 0.87587 0.92914 0.87559 0.92808 0.92579 0.97551 0.83768 0.79687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 10.28 71.98 0.74 -1.41 16 2 C 0.06 1.25 6.03 71.98 0.43 1.69 16 3 O -0.31 -8.79 10.11 -89.96 -0.91 -9.70 16 4 C 0.31 9.77 7.49 84.80 0.63 10.40 16 5 C -0.14 -4.70 9.61 22.75 0.22 -4.48 16 6 C -0.06 -2.16 5.91 -19.90 -0.12 -2.28 16 7 C 0.54 20.14 5.89 86.88 0.51 20.66 16 8 O -0.57 -22.40 14.86 -3.77 -0.06 -22.45 16 9 N -0.69 -25.07 2.74 -437.68 -1.20 -26.27 16 10 C 0.15 4.81 2.91 46.57 0.14 4.95 16 11 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 12 C -0.11 -3.14 5.30 32.50 0.17 -2.97 16 13 C -0.09 -2.70 4.27 -9.05 -0.04 -2.74 16 14 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 15 C -0.12 -3.52 6.19 32.17 0.20 -3.32 16 16 C 0.12 4.34 2.98 45.79 0.14 4.48 16 17 H 0.05 2.03 2.41 -2.39 -0.01 2.02 16 18 C -0.13 -4.14 5.44 30.89 0.17 -3.98 16 19 N -0.61 -25.36 1.48 -664.45 -0.98 -26.34 16 20 C -0.25 -12.38 8.55 84.04 0.72 -11.66 16 21 H 0.09 4.35 5.88 -2.91 -0.02 4.33 16 22 C -0.01 -0.62 5.46 84.86 0.46 -0.16 16 23 N -0.94 -52.26 13.97 21.65 0.30 -51.96 16 24 Si 0.94 42.97 24.62 68.60 1.69 44.66 16 25 H -0.27 -11.78 6.69 99.48 0.67 -11.11 16 26 H -0.32 -15.45 7.11 99.48 0.71 -14.74 16 27 H -0.27 -11.97 7.00 99.48 0.70 -11.27 16 28 C 0.10 3.86 5.77 86.85 0.50 4.36 16 29 C -0.18 -6.27 9.40 22.63 0.21 -6.06 16 30 C 0.14 4.47 11.17 84.62 0.94 5.41 16 31 N -0.53 -16.62 9.18 -309.14 -2.84 -19.46 16 32 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 36 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 37 H 0.15 4.85 7.75 -2.91 -0.02 4.83 16 38 H 0.43 17.10 2.50 -92.71 -0.23 16.86 16 39 H 0.10 2.08 8.03 -2.39 -0.02 2.06 16 40 H 0.07 2.05 6.49 -2.39 -0.02 2.03 16 41 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 42 H 0.11 2.34 7.82 -2.39 -0.02 2.32 16 43 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.11 2.55 8.02 -2.39 -0.02 2.53 16 45 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 46 H 0.06 2.19 3.89 -8.28 -0.03 2.15 16 47 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 48 H 0.14 5.67 4.48 -2.91 -0.01 5.66 16 49 H 0.19 5.06 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -60.82 365.40 2.72 -58.09 By element: Atomic # 1 Polarization: 39.85 SS G_CDS: 0.69 Total: 40.53 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 6.04 Total: 12.90 kcal Atomic # 7 Polarization: -119.31 SS G_CDS: -4.72 Total: -124.04 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.97 Total: -32.16 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.69 Total: 44.66 kcal Total: -60.82 2.72 -58.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047144895.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.777 kcal (2) G-P(sol) polarization free energy of solvation -60.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds