Wall clock time and date at job start Wed Apr 1 2020 05:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47464 * 2 1 4 4 C 1.35671 * 116.99932 * 179.97438 * 3 2 1 5 5 C 1.38925 * 119.68390 * 179.97438 * 4 3 2 6 6 C 1.38373 * 119.11623 * 179.97438 * 5 4 3 7 7 C 1.38835 * 118.47967 * 359.97438 * 6 5 4 8 8 C 1.38043 * 119.29516 * 0.02562 * 7 6 5 9 9 C 1.50693 * 119.58478 * 179.71915 * 8 7 6 10 10 C 1.50696 * 109.47393 * 124.99920 * 9 8 7 11 11 O 1.21283 * 119.99822 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00429 * 179.97438 * 10 9 8 13 13 C 1.46744 * 125.32764 * 359.70085 * 12 10 9 14 14 C 1.54122 * 106.61815 * 161.52538 * 13 12 10 15 15 H 1.09005 * 113.47296 * 151.40324 * 14 13 12 16 16 C 1.53963 * 109.47773 * 278.67772 * 14 13 12 17 17 N 1.46777 * 106.62894 * 138.17622 * 16 14 13 18 18 C 1.36932 * 125.34033 * 161.50508 * 17 16 14 19 19 H 1.07995 * 120.00394 * 354.14394 * 18 17 16 20 20 C 1.38814 * 119.99891 * 174.13970 * 18 17 16 21 21 N 1.31626 * 119.99995 * 6.98288 * 20 18 17 22 22 Si 1.86800 * 119.99980 * 186.98807 * 20 18 17 23 23 H 1.48505 * 109.47197 * 94.98693 * 22 20 18 24 24 H 1.48507 * 109.47065 * 214.98441 * 22 20 18 25 25 H 1.48495 * 109.47193 * 334.98557 * 22 20 18 26 26 C 1.46674 * 109.31900 * 341.48936 * 17 16 14 27 27 C 1.53724 * 107.94269 * 0.54024 * 26 17 16 28 28 H 1.09003 * 113.05455 * 140.00626 * 27 26 17 29 29 C 1.46636 * 125.32822 * 180.02562 * 12 10 9 30 30 N 1.31963 * 120.83273 * 359.97438 * 8 7 6 31 31 H 1.08993 * 109.47008 * 60.00108 * 1 2 3 32 32 H 1.08997 * 109.46990 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46940 * 300.00184 * 1 2 3 34 34 H 1.09000 * 109.47501 * 239.99334 * 2 1 3 35 35 H 1.09007 * 109.47263 * 119.99809 * 2 1 3 36 36 H 1.07998 * 120.44019 * 359.95703 * 5 4 3 37 37 H 1.07992 * 120.76188 * 179.97438 * 6 5 4 38 38 H 1.08003 * 120.34918 * 179.97438 * 7 6 5 39 39 H 1.09005 * 109.47182 * 244.99802 * 9 8 7 40 40 H 1.09002 * 109.47509 * 4.99718 * 9 8 7 41 41 H 1.08995 * 110.00843 * 280.97361 * 13 12 10 42 42 H 1.09007 * 110.00599 * 42.34231 * 13 12 10 43 43 H 1.09000 * 110.03028 * 257.46989 * 16 14 13 44 44 H 1.09005 * 110.02849 * 18.88689 * 16 14 13 45 45 H 0.96996 * 119.99519 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.76827 * 240.92617 * 26 17 16 47 47 H 1.08996 * 109.77041 * 120.16765 * 26 17 16 48 48 H 1.08998 * 109.76364 * 300.48341 * 29 12 10 49 49 H 1.08996 * 109.76421 * 61.20380 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3514 1.5249 0.0005 5 6 3.8754 2.8116 0.0000 6 6 5.2490 2.9792 0.0011 7 6 6.0539 1.8480 0.0033 8 6 5.4647 0.5996 0.0037 9 6 6.3322 -0.6325 -0.0005 10 6 5.9587 -1.5138 1.1635 11 8 5.0747 -1.1748 1.9216 12 7 6.6063 -2.6791 1.3617 13 6 7.6846 -3.2050 0.5166 14 6 8.4197 -4.2709 1.3525 15 1 8.8790 -5.0545 0.7499 16 6 9.4152 -3.5811 2.3031 17 7 9.3109 -4.2719 3.5939 18 6 10.2451 -4.2270 4.5941 19 1 11.1883 -3.7272 4.4300 20 6 9.9798 -4.8240 5.8189 21 7 8.8927 -5.5493 5.9758 22 14 11.1655 -4.5977 7.2445 23 1 10.7075 -3.4697 8.0950 24 1 11.2094 -5.8419 8.0541 25 1 12.5220 -4.3016 6.7180 26 6 8.0488 -5.0175 3.6447 27 6 7.3167 -4.8006 2.3105 28 1 6.8325 -5.7032 1.9376 29 6 6.3390 -3.6230 2.4515 30 7 4.1513 0.4717 0.0026 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 3.2195 3.6695 -0.0015 37 1 5.6848 3.9672 0.0004 38 1 7.1297 1.9438 0.0037 39 1 6.1833 -1.1786 -0.9320 40 1 7.3788 -0.3404 0.0861 41 1 7.2668 -3.6556 -0.3836 42 1 8.3726 -2.4033 0.2481 43 1 10.4287 -3.6717 1.9121 44 1 9.1524 -2.5297 2.4201 45 1 8.7076 -5.9667 6.8316 46 1 7.4352 -4.6481 4.4663 47 1 8.2531 -6.0789 3.7850 48 1 6.4919 -3.1303 3.4116 49 1 5.3133 -3.9851 2.3823 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048948057.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:37 Heat of formation + Delta-G solvation = -3.408949 kcal Electronic energy + Delta-G solvation = -30366.467373 eV Core-core repulsion = 26294.784249 eV Total energy + Delta-G solvation = -4071.683125 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.88086 -40.07288 -38.49769 -37.76521 -34.94767 -33.25040 -32.38393 -32.21408 -31.24043 -30.21070 -29.64935 -28.15616 -25.50372 -25.42412 -24.11113 -23.17418 -22.62549 -22.01110 -20.19599 -19.38733 -19.21929 -18.36463 -17.24025 -16.70899 -16.60533 -16.31945 -16.13131 -15.90027 -15.07192 -14.74437 -14.72516 -14.24397 -14.01607 -13.89227 -13.68133 -13.26477 -13.20187 -13.06120 -12.73730 -12.69207 -12.47199 -12.17789 -12.05693 -11.98023 -11.80484 -11.68909 -11.63685 -11.40272 -10.91982 -10.83575 -10.81916 -10.35582 -10.11952 -10.02057 -9.96781 -9.93351 -9.72830 -9.67991 -9.53248 -8.60790 -8.54253 -8.31596 -6.84342 -5.75099 -3.07454 0.98337 1.20049 2.85295 2.92267 3.16501 3.39528 3.44812 3.46664 3.70179 3.96072 4.47326 4.50952 4.66937 4.78010 4.83479 4.87328 4.91934 4.95425 5.04755 5.08588 5.17770 5.23835 5.28622 5.30116 5.45235 5.48864 5.54263 5.57362 5.64459 5.69552 5.71128 5.76505 5.77949 5.89178 5.93884 6.03251 6.13801 6.28495 6.29021 6.34349 6.56287 6.61316 6.69725 6.82478 7.16815 7.50754 7.57760 7.76118 7.79274 7.82737 8.24750 8.40422 9.20222 9.80979 10.45180 11.36971 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015348 B = 0.002384 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.935732 B =11742.089611 C =12055.329421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 O -0.310 6.310 4 C 0.326 3.674 5 C -0.197 4.197 6 C -0.041 4.041 7 C -0.205 4.205 8 C 0.187 3.813 9 C -0.089 4.089 10 C 0.532 3.468 11 O -0.527 6.527 12 N -0.611 5.611 13 C 0.110 3.890 14 C -0.110 4.110 15 H 0.098 0.902 16 C 0.145 3.855 17 N -0.602 5.602 18 C -0.231 4.231 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.186 3.814 27 C -0.122 4.122 28 H 0.088 0.912 29 C 0.121 3.879 30 N -0.511 5.511 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.034 0.966 44 H 0.017 0.983 45 H 0.253 0.747 46 H 0.051 0.949 47 H 0.045 0.955 48 H 0.074 0.926 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.474 11.682 -18.127 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.217 6.217 4 C 0.147 3.853 5 C -0.217 4.217 6 C -0.067 4.067 7 C -0.226 4.226 8 C 0.050 3.950 9 C -0.130 4.130 10 C 0.319 3.681 11 O -0.403 6.403 12 N -0.345 5.345 13 C -0.014 4.014 14 C -0.130 4.130 15 H 0.117 0.883 16 C 0.019 3.981 17 N -0.329 5.329 18 C -0.359 4.359 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.061 3.939 27 C -0.142 4.142 28 H 0.106 0.894 29 C -0.001 4.001 30 N -0.235 5.235 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.035 0.965 45 H 0.063 0.937 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.092 0.908 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.588 11.209 -17.493 23.319 hybrid contribution 1.065 0.597 0.830 1.476 sum -9.524 11.806 -16.663 22.533 Atomic orbital electron populations 1.21813 0.93191 1.02868 1.03030 1.22600 0.94447 0.80927 1.02923 1.86193 1.16904 1.30885 1.87765 1.19733 0.84043 0.89732 0.91808 1.21036 0.95921 0.95700 1.09078 1.21328 0.92287 0.99279 0.93795 1.21765 1.01420 0.92476 1.06919 1.20185 0.88655 0.93501 0.92668 1.20636 0.99701 0.93308 0.99333 1.19753 0.81802 0.80305 0.86196 1.90730 1.30597 1.71998 1.46935 1.48248 1.36673 1.20100 1.29520 1.21991 0.88869 0.97078 0.93458 1.22965 0.96664 0.96954 0.96380 0.88335 1.21239 0.95776 0.94528 0.86599 1.44214 1.20002 1.55402 1.13241 1.19033 0.95637 1.30900 0.90311 0.90407 1.24823 0.97857 0.99835 0.97753 1.69965 1.26683 1.36090 1.23928 0.86119 0.79947 0.77204 0.82617 1.21606 1.21747 1.20631 1.21047 0.86282 0.96665 0.89887 1.23128 0.95155 0.96451 0.99482 0.89410 1.21928 0.98372 0.89248 0.90521 1.67040 1.05809 1.33073 1.17538 0.91890 0.90324 0.91698 0.91852 0.91041 0.84346 0.84106 0.84450 0.87110 0.87057 0.91838 0.90957 0.94757 0.96489 0.93678 0.93045 0.93682 0.90779 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.90 16 2 C 0.07 0.77 6.03 37.16 0.22 0.99 16 3 O -0.31 -4.07 10.12 -18.71 -0.19 -4.26 16 4 C 0.33 4.45 7.49 -17.12 -0.13 4.32 16 5 C -0.20 -2.15 10.04 -39.28 -0.39 -2.55 16 6 C -0.04 -0.39 10.17 -39.31 -0.40 -0.79 16 7 C -0.21 -2.13 9.70 -39.43 -0.38 -2.51 16 8 C 0.19 2.41 5.75 -82.61 -0.48 1.93 16 9 C -0.09 -1.01 5.13 -29.04 -0.15 -1.16 16 10 C 0.53 8.49 7.77 -10.99 -0.09 8.41 16 11 O -0.53 -10.63 15.65 5.55 0.09 -10.54 16 12 N -0.61 -9.47 3.30 -172.26 -0.57 -10.04 16 13 C 0.11 1.36 5.77 -3.32 -0.02 1.34 16 14 C -0.11 -1.69 4.16 -88.26 -0.37 -2.06 16 15 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 16 C 0.14 2.83 6.49 -3.39 -0.02 2.81 16 17 N -0.60 -14.96 3.38 -171.84 -0.58 -15.55 16 18 C -0.23 -6.35 10.24 -15.06 -0.15 -6.50 16 19 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 20 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 21 N -0.92 -26.76 10.30 55.49 0.57 -26.19 16 22 Si 0.91 22.06 29.56 -169.99 -5.02 17.04 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.19 4.36 4.78 -3.57 -0.02 4.34 16 27 C -0.12 -2.15 4.01 -88.61 -0.36 -2.50 16 28 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 29 C 0.12 2.16 6.22 -3.61 -0.02 2.14 16 30 N -0.51 -7.50 8.09 -9.55 -0.08 -7.58 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 35 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 36 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.14 1.05 7.94 -52.48 -0.42 0.64 16 39 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.11 0.97 7.60 -51.93 -0.39 0.57 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.76 7.43 -51.93 -0.39 0.37 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.02 0.35 7.72 -51.93 -0.40 -0.05 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.05 1.37 6.61 -51.93 -0.34 1.02 16 47 H 0.05 1.17 7.52 -51.93 -0.39 0.78 16 48 H 0.07 1.57 7.29 -51.93 -0.38 1.20 16 49 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 395.11 15.07 5.95 5.95 Total: -1.00 -34.78 395.11 -10.04 -44.82 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -7.75 Total: -0.67 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -2.46 Total: 7.03 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -0.66 Total: -59.36 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.10 Total: -14.80 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.78 -10.04 -44.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048948057.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.407 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds