Wall clock time and date at job start Wed Apr 1 2020 05:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47464 * 2 1 4 4 C 1.35671 * 116.99932 * 179.97438 * 3 2 1 5 5 C 1.38925 * 119.68390 * 179.97438 * 4 3 2 6 6 C 1.38373 * 119.11623 * 179.97438 * 5 4 3 7 7 C 1.38835 * 118.47967 * 359.97438 * 6 5 4 8 8 C 1.38043 * 119.29516 * 0.02562 * 7 6 5 9 9 C 1.50693 * 119.58478 * 179.71915 * 8 7 6 10 10 C 1.50696 * 109.47393 * 124.99920 * 9 8 7 11 11 O 1.21283 * 119.99822 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00429 * 179.97438 * 10 9 8 13 13 C 1.46744 * 125.32764 * 359.70085 * 12 10 9 14 14 C 1.54122 * 106.61815 * 161.52538 * 13 12 10 15 15 H 1.09005 * 113.47296 * 151.40324 * 14 13 12 16 16 C 1.53963 * 109.47773 * 278.67772 * 14 13 12 17 17 N 1.46777 * 106.62894 * 138.17622 * 16 14 13 18 18 C 1.36932 * 125.34033 * 161.50508 * 17 16 14 19 19 H 1.07995 * 120.00394 * 354.14394 * 18 17 16 20 20 C 1.38814 * 119.99891 * 174.13970 * 18 17 16 21 21 N 1.31626 * 119.99995 * 6.98288 * 20 18 17 22 22 Si 1.86800 * 119.99980 * 186.98807 * 20 18 17 23 23 H 1.48505 * 109.47197 * 94.98693 * 22 20 18 24 24 H 1.48507 * 109.47065 * 214.98441 * 22 20 18 25 25 H 1.48495 * 109.47193 * 334.98557 * 22 20 18 26 26 C 1.46674 * 109.31900 * 341.48936 * 17 16 14 27 27 C 1.53724 * 107.94269 * 0.54024 * 26 17 16 28 28 H 1.09003 * 113.05455 * 140.00626 * 27 26 17 29 29 C 1.46636 * 125.32822 * 180.02562 * 12 10 9 30 30 N 1.31963 * 120.83273 * 359.97438 * 8 7 6 31 31 H 1.08993 * 109.47008 * 60.00108 * 1 2 3 32 32 H 1.08997 * 109.46990 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46940 * 300.00184 * 1 2 3 34 34 H 1.09000 * 109.47501 * 239.99334 * 2 1 3 35 35 H 1.09007 * 109.47263 * 119.99809 * 2 1 3 36 36 H 1.07998 * 120.44019 * 359.95703 * 5 4 3 37 37 H 1.07992 * 120.76188 * 179.97438 * 6 5 4 38 38 H 1.08003 * 120.34918 * 179.97438 * 7 6 5 39 39 H 1.09005 * 109.47182 * 244.99802 * 9 8 7 40 40 H 1.09002 * 109.47509 * 4.99718 * 9 8 7 41 41 H 1.08995 * 110.00843 * 280.97361 * 13 12 10 42 42 H 1.09007 * 110.00599 * 42.34231 * 13 12 10 43 43 H 1.09000 * 110.03028 * 257.46989 * 16 14 13 44 44 H 1.09005 * 110.02849 * 18.88689 * 16 14 13 45 45 H 0.96996 * 119.99519 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.76827 * 240.92617 * 26 17 16 47 47 H 1.08996 * 109.77041 * 120.16765 * 26 17 16 48 48 H 1.08998 * 109.76364 * 300.48341 * 29 12 10 49 49 H 1.08996 * 109.76421 * 61.20380 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3514 1.5249 0.0005 5 6 3.8754 2.8116 0.0000 6 6 5.2490 2.9792 0.0011 7 6 6.0539 1.8480 0.0033 8 6 5.4647 0.5996 0.0037 9 6 6.3322 -0.6325 -0.0005 10 6 5.9587 -1.5138 1.1635 11 8 5.0747 -1.1748 1.9216 12 7 6.6063 -2.6791 1.3617 13 6 7.6846 -3.2050 0.5166 14 6 8.4197 -4.2709 1.3525 15 1 8.8790 -5.0545 0.7499 16 6 9.4152 -3.5811 2.3031 17 7 9.3109 -4.2719 3.5939 18 6 10.2451 -4.2270 4.5941 19 1 11.1883 -3.7272 4.4300 20 6 9.9798 -4.8240 5.8189 21 7 8.8927 -5.5493 5.9758 22 14 11.1655 -4.5977 7.2445 23 1 10.7075 -3.4697 8.0950 24 1 11.2094 -5.8419 8.0541 25 1 12.5220 -4.3016 6.7180 26 6 8.0488 -5.0175 3.6447 27 6 7.3167 -4.8006 2.3105 28 1 6.8325 -5.7032 1.9376 29 6 6.3390 -3.6230 2.4515 30 7 4.1513 0.4717 0.0026 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 3.2195 3.6695 -0.0015 37 1 5.6848 3.9672 0.0004 38 1 7.1297 1.9438 0.0037 39 1 6.1833 -1.1786 -0.9320 40 1 7.3788 -0.3404 0.0861 41 1 7.2668 -3.6556 -0.3836 42 1 8.3726 -2.4033 0.2481 43 1 10.4287 -3.6717 1.9121 44 1 9.1524 -2.5297 2.4201 45 1 8.7076 -5.9667 6.8316 46 1 7.4352 -4.6481 4.4663 47 1 8.2531 -6.0789 3.7850 48 1 6.4919 -3.1303 3.4116 49 1 5.3133 -3.9851 2.3823 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048948057.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:36 Heat of formation + Delta-G solvation = -27.328709 kcal Electronic energy + Delta-G solvation = -30367.504612 eV Core-core repulsion = 26294.784249 eV Total energy + Delta-G solvation = -4072.720363 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.83278 -41.30125 -39.69310 -38.85583 -36.58258 -34.23101 -33.95113 -33.15830 -32.29433 -31.57288 -31.22617 -29.16689 -27.22567 -26.92576 -25.03658 -24.45823 -23.60609 -22.93113 -21.91806 -20.82564 -20.39271 -19.28025 -18.89924 -18.06628 -17.61385 -17.27806 -17.18181 -16.87648 -16.75588 -16.20837 -15.99586 -15.51140 -15.14050 -14.97899 -14.78487 -14.70053 -14.48411 -13.98651 -13.93705 -13.59293 -13.51768 -13.42808 -13.41367 -13.26281 -13.06028 -12.94332 -12.81427 -12.76033 -12.65436 -12.46724 -12.00090 -11.87041 -11.72143 -11.65476 -11.56138 -11.43141 -10.95383 -10.78972 -10.69022 -10.48951 -9.59398 -9.40129 -8.87661 -7.87687 -5.21258 0.14152 0.40071 1.43596 1.46165 1.54491 1.68028 2.01827 2.08332 2.48230 2.82500 3.10893 3.30786 3.44348 3.53509 3.74887 3.79347 3.95095 3.98159 4.02317 4.06283 4.16308 4.19918 4.24763 4.33534 4.36195 4.41163 4.48992 4.49616 4.58448 4.63507 4.77337 4.81424 4.83014 4.86020 4.90131 4.97635 5.03424 5.04755 5.16061 5.16695 5.25597 5.30088 5.40275 5.49396 5.56032 5.61214 5.76948 6.20639 6.27232 6.59222 6.95854 7.10303 7.20938 7.79864 8.41763 9.23075 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015348 B = 0.002384 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.935732 B =11742.089611 C =12055.329421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.069 3.931 3 O -0.321 6.321 4 C 0.292 3.708 5 C -0.201 4.201 6 C -0.038 4.038 7 C -0.201 4.201 8 C 0.156 3.844 9 C -0.078 4.078 10 C 0.525 3.475 11 O -0.582 6.582 12 N -0.612 5.612 13 C 0.112 3.888 14 C -0.095 4.095 15 H 0.129 0.871 16 C 0.138 3.862 17 N -0.625 5.625 18 C -0.241 4.241 19 H 0.085 0.915 20 C -0.068 4.068 21 N -0.950 5.950 22 Si 0.975 3.025 23 H -0.293 1.293 24 H -0.294 1.294 25 H -0.263 1.263 26 C 0.196 3.804 27 C -0.110 4.110 28 H 0.115 0.885 29 C 0.130 3.870 30 N -0.542 5.542 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.157 0.843 37 H 0.180 0.820 38 H 0.170 0.830 39 H 0.138 0.862 40 H 0.146 0.854 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.048 0.952 44 H 0.012 0.988 45 H 0.246 0.754 46 H 0.004 0.996 47 H 0.011 0.989 48 H 0.025 0.975 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.787 13.247 -21.393 26.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.006 4.006 3 O -0.229 6.229 4 C 0.113 3.887 5 C -0.221 4.221 6 C -0.063 4.063 7 C -0.221 4.221 8 C 0.019 3.981 9 C -0.117 4.117 10 C 0.314 3.686 11 O -0.461 6.461 12 N -0.346 5.346 13 C -0.009 4.009 14 C -0.114 4.114 15 H 0.147 0.853 16 C 0.013 3.987 17 N -0.352 5.352 18 C -0.370 4.370 19 H 0.102 0.898 20 C -0.261 4.261 21 N -0.599 5.599 22 Si 0.803 3.197 23 H -0.221 1.221 24 H -0.221 1.221 25 H -0.187 1.187 26 C 0.071 3.929 27 C -0.130 4.130 28 H 0.133 0.867 29 C 0.007 3.993 30 N -0.265 5.265 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.174 0.826 37 H 0.197 0.803 38 H 0.187 0.813 39 H 0.156 0.844 40 H 0.164 0.836 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.066 0.934 44 H 0.030 0.970 45 H 0.055 0.945 46 H 0.022 0.978 47 H 0.029 0.971 48 H 0.043 0.957 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.856 12.787 -20.821 25.990 hybrid contribution 0.576 0.163 1.873 1.966 sum -8.280 12.950 -18.949 24.399 Atomic orbital electron populations 1.21807 0.90728 1.04067 1.03505 1.22597 0.96320 0.80494 1.01233 1.86176 1.17314 1.31287 1.88131 1.20185 0.84134 0.90821 0.93594 1.21403 0.97239 0.95195 1.08277 1.21834 0.91485 1.00914 0.92051 1.22185 1.03167 0.91702 1.05029 1.20637 0.88390 0.95178 0.93887 1.20728 1.01081 0.92068 0.97852 1.20696 0.80797 0.80285 0.86788 1.90711 1.33064 1.73142 1.49192 1.48360 1.37432 1.19771 1.29026 1.22250 0.88243 0.97228 0.93210 1.23007 0.94640 0.98125 0.95621 0.85284 1.21493 0.97902 0.94105 0.85230 1.44551 1.19759 1.55976 1.14872 1.19455 0.96379 1.29851 0.91284 0.89752 1.25672 0.99749 1.00286 1.00362 1.70199 1.28560 1.37306 1.23839 0.85107 0.78773 0.76480 0.79310 1.22069 1.22118 1.18729 1.20720 0.86011 0.94190 0.91984 1.22950 0.95561 0.97542 0.96925 0.86674 1.21571 0.98536 0.89603 0.89627 1.66971 1.07062 1.34109 1.18401 0.90679 0.88764 0.91846 0.92084 0.94148 0.82573 0.80260 0.81252 0.84404 0.83579 0.87688 0.87764 0.93389 0.96999 0.94517 0.97810 0.97056 0.95679 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 10.28 71.98 0.74 -1.70 16 2 C 0.07 1.69 6.03 71.98 0.43 2.13 16 3 O -0.32 -8.74 10.12 -89.88 -0.91 -9.65 16 4 C 0.29 8.04 7.49 84.79 0.63 8.67 16 5 C -0.20 -4.14 10.04 22.47 0.23 -3.91 16 6 C -0.04 -0.60 10.17 22.44 0.23 -0.37 16 7 C -0.20 -3.53 9.70 22.37 0.22 -3.31 16 8 C 0.16 3.73 5.75 42.49 0.24 3.98 16 9 C -0.08 -1.51 5.13 29.10 0.15 -1.36 16 10 C 0.52 16.17 7.77 87.66 0.68 16.85 16 11 O -0.58 -24.27 15.65 -3.04 -0.05 -24.31 16 12 N -0.61 -17.90 3.30 -817.31 -2.70 -20.60 16 13 C 0.11 2.25 5.77 86.71 0.50 2.75 16 14 C -0.09 -2.59 4.16 -9.26 -0.04 -2.63 16 15 H 0.13 2.87 8.14 -2.38 -0.02 2.85 16 16 C 0.14 5.13 6.49 86.65 0.56 5.69 16 17 N -0.63 -31.58 3.38 -697.57 -2.36 -33.94 16 18 C -0.24 -13.46 10.24 84.03 0.86 -12.60 16 19 H 0.08 4.47 7.84 -2.91 -0.02 4.45 16 20 C -0.07 -3.90 5.48 84.86 0.46 -3.44 16 21 N -0.95 -58.14 10.30 21.65 0.22 -57.91 16 22 Si 0.97 46.38 29.56 68.60 2.03 48.40 16 23 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 25 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 26 C 0.20 9.62 4.78 86.59 0.41 10.04 16 27 C -0.11 -3.81 4.01 -9.49 -0.04 -3.84 16 28 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 29 C 0.13 4.73 6.22 86.59 0.54 5.27 16 30 N -0.54 -15.94 8.09 -297.00 -2.40 -18.34 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.47 8.11 -2.39 -0.02 1.45 16 35 H 0.04 1.21 8.10 -2.38 -0.02 1.19 16 36 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 37 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.17 1.77 7.94 -2.91 -0.02 1.75 16 39 H 0.14 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.15 1.78 7.60 -2.39 -0.02 1.76 16 41 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.10 1.52 7.43 -2.38 -0.02 1.50 16 43 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.01 0.47 7.72 -2.38 -0.02 0.45 16 45 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 46 H 0.00 0.21 6.61 -2.38 -0.02 0.20 16 47 H 0.01 0.62 7.52 -2.39 -0.02 0.60 16 48 H 0.02 1.14 7.29 -2.39 -0.02 1.13 16 49 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -84.54 395.11 1.59 -82.95 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.94 Total: 11.21 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: 6.82 Total: 22.19 kcal Atomic # 7 Polarization: -123.56 SS G_CDS: -7.24 Total: -130.79 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.96 Total: -33.96 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -84.54 1.59 -82.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048948057.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.620 kcal (2) G-P(sol) polarization free energy of solvation -84.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds