Wall clock time and date at job start Wed Apr 1 2020 05:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47312 * 2 1 4 4 C 1.35496 * 117.00324 * 180.02562 * 3 2 1 5 5 C 1.39173 * 119.52606 * 180.02562 * 4 3 2 6 6 C 1.37955 * 119.25748 * 179.72191 * 5 4 3 7 7 C 1.40281 * 118.36164 * 0.51902 * 6 5 4 8 8 C 1.47615 * 120.49994 * 179.75204 * 7 6 5 9 9 O 1.21582 * 119.99785 * 143.12829 * 8 7 6 10 10 N 1.34778 * 119.99999 * 323.12713 * 8 7 6 11 11 C 1.47848 * 122.22891 * 354.25857 * 10 8 7 12 12 C 1.52707 * 111.06358 * 232.46429 * 11 10 8 13 13 C 1.53881 * 111.52192 * 311.46242 * 12 11 10 14 14 C 1.50815 * 107.40856 * 56.70807 * 13 12 11 15 15 H 1.09002 * 107.80159 * 51.24327 * 14 13 12 16 16 C 1.45729 * 122.22463 * 174.22880 * 10 8 7 17 17 H 1.08994 * 111.07499 * 241.42273 * 16 10 8 18 18 C 1.53435 * 116.36820 * 9.93414 * 16 10 8 19 19 C 1.55467 * 101.66987 * 152.71357 * 18 16 10 20 20 N 1.45027 * 119.37386 * 175.79148 * 14 13 12 21 21 C 1.36927 * 126.56231 * 331.78573 * 20 14 13 22 22 H 1.08000 * 120.00230 * 359.71035 * 21 20 14 23 23 C 1.38814 * 119.99947 * 179.70897 * 21 20 14 24 24 N 1.31614 * 119.99997 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99928 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47344 * 180.02562 * 25 23 21 27 27 H 1.48503 * 109.47482 * 300.00269 * 25 23 21 28 28 H 1.48500 * 109.47138 * 60.00201 * 25 23 21 29 29 C 1.39523 * 119.00361 * 359.48862 * 7 6 5 30 30 N 1.31672 * 120.62501 * 0.24439 * 29 7 6 31 31 H 1.08999 * 109.47573 * 59.99406 * 1 2 3 32 32 H 1.09001 * 109.47290 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46595 * 299.99673 * 1 2 3 34 34 H 1.09004 * 109.46641 * 240.00830 * 2 1 3 35 35 H 1.08999 * 109.47573 * 120.00594 * 2 1 3 36 36 H 1.07990 * 120.36824 * 0.02562 * 5 4 3 37 37 H 1.08007 * 120.81786 * 180.27829 * 6 5 4 38 38 H 1.09004 * 109.16002 * 352.86904 * 11 10 8 39 39 H 1.09002 * 109.16466 * 112.10614 * 11 10 8 40 40 H 1.09005 * 109.07192 * 71.98601 * 12 11 10 41 41 H 1.08998 * 109.07602 * 191.00518 * 12 11 10 42 42 H 1.08996 * 109.88587 * 176.38616 * 13 12 11 43 43 H 1.08997 * 109.87877 * 297.39626 * 13 12 11 44 44 H 1.09001 * 110.98571 * 34.62176 * 18 16 10 45 45 H 1.08999 * 111.01784 * 270.82673 * 18 16 10 46 46 H 1.09008 * 109.96018 * 218.01708 * 19 18 16 47 47 H 1.09006 * 109.95674 * 96.78378 * 19 18 16 48 48 H 0.97004 * 120.00229 * 179.97438 * 24 23 21 49 49 H 1.07997 * 119.68848 * 180.27698 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3496 1.5248 -0.0005 5 6 3.8709 2.8152 0.0000 6 6 5.2394 2.9896 0.0053 7 6 6.0565 1.8494 -0.0012 8 6 7.5267 1.9812 -0.0015 9 8 8.2078 1.1933 0.6257 10 7 8.1141 2.9751 -0.6970 11 6 7.3462 3.8837 -1.5750 12 6 7.9540 3.9377 -2.9749 13 6 9.4749 4.1654 -2.9216 14 6 10.0678 3.0587 -2.0859 15 1 9.6970 2.1110 -2.4763 16 6 9.5482 3.2260 -0.6333 17 1 9.7549 4.2210 -0.2394 18 6 10.3952 2.1622 0.0775 19 6 11.7705 2.3329 -0.6271 20 7 11.5081 2.9702 -1.9411 21 6 12.4463 3.3983 -2.8419 22 1 12.1351 3.8507 -3.7719 23 6 13.7974 3.2507 -2.5599 24 7 14.1767 2.6989 -1.4268 25 14 15.0773 3.8353 -3.7885 26 1 16.4363 3.5648 -3.2543 27 1 14.8977 3.1114 -5.0727 28 1 14.9155 5.2938 -4.0157 29 6 5.4587 0.5887 -0.0018 30 7 4.1475 0.4681 -0.0012 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3632 0.5138 0.8900 34 1 1.8933 -0.5137 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.2115 3.6704 0.0012 37 1 5.6710 3.9797 0.0103 38 1 6.3178 3.5292 -1.6449 39 1 7.3508 4.8853 -1.1449 40 1 7.7525 2.9969 -3.4872 41 1 7.4923 4.7526 -3.5324 42 1 9.8898 4.1356 -3.9291 43 1 9.6895 5.1296 -2.4609 44 1 9.9910 1.1642 -0.0919 45 1 10.4739 2.3736 1.1439 46 1 12.2375 1.3588 -0.7725 47 1 12.4193 2.9710 -0.0269 48 1 15.1209 2.5954 -1.2298 49 1 6.0772 -0.2966 -0.0023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049513994.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:47 Heat of formation + Delta-G solvation = 11.019574 kcal Electronic energy + Delta-G solvation = -30833.811283 eV Core-core repulsion = 26762.753826 eV Total energy + Delta-G solvation = -4071.057457 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.20706 -40.17304 -38.45488 -37.44731 -35.54869 -33.14335 -32.63665 -32.50958 -31.91526 -30.40458 -28.82064 -28.26069 -25.34733 -24.72596 -24.43657 -23.52363 -22.64441 -21.49810 -21.02477 -19.78860 -19.27526 -18.84839 -17.31075 -16.82854 -16.65262 -16.46304 -15.57961 -15.19561 -15.00403 -14.82126 -14.61230 -14.44628 -14.23968 -14.09056 -13.86534 -13.53423 -13.31993 -13.13530 -12.95952 -12.70552 -12.58534 -12.45382 -12.22063 -11.96183 -11.80855 -11.58928 -11.18160 -11.08300 -10.84484 -10.75899 -10.60728 -10.48558 -10.16341 -10.07739 -10.04198 -9.96925 -9.84451 -9.60555 -9.07173 -8.77764 -8.55716 -8.27490 -6.81638 -5.68630 -3.02961 0.59993 0.87815 2.62472 2.79874 3.06667 3.41261 3.45574 3.47099 3.55931 3.96151 4.37295 4.49661 4.53580 4.62975 4.63188 4.71720 4.76075 4.83665 5.00647 5.06433 5.18656 5.29006 5.34414 5.38717 5.41169 5.43745 5.50933 5.60044 5.61911 5.65217 5.75350 5.76605 5.85617 5.97591 6.01753 6.08649 6.24635 6.30074 6.38560 6.55753 6.72376 6.76719 6.87819 6.90481 7.18710 7.46656 7.59032 7.63301 7.69329 7.85447 8.26373 8.33312 9.20674 9.84511 10.52851 11.43240 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028037 B = 0.002324 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.438666 B =12043.107709 C =12509.617014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.305 6.305 4 C 0.337 3.663 5 C -0.197 4.197 6 C -0.014 4.014 7 C -0.215 4.215 8 C 0.568 3.432 9 O -0.524 6.524 10 N -0.593 5.593 11 C 0.101 3.899 12 C -0.129 4.129 13 C -0.116 4.116 14 C 0.160 3.840 15 H 0.017 0.983 16 C 0.117 3.883 17 H 0.081 0.919 18 C -0.134 4.134 19 C 0.172 3.828 20 N -0.592 5.592 21 C -0.227 4.227 22 H 0.078 0.922 23 C -0.007 4.007 24 N -0.919 5.919 25 Si 0.911 3.089 26 H -0.290 1.290 27 H -0.286 1.286 28 H -0.285 1.285 29 C 0.197 3.803 30 N -0.543 5.543 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.059 0.941 46 H 0.040 0.960 47 H 0.056 0.944 48 H 0.253 0.747 49 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.857 0.469 2.296 25.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.212 6.212 4 C 0.158 3.842 5 C -0.218 4.218 6 C -0.039 4.039 7 C -0.221 4.221 8 C 0.356 3.644 9 O -0.401 6.401 10 N -0.325 5.325 11 C -0.021 4.021 12 C -0.168 4.168 13 C -0.155 4.155 14 C 0.050 3.950 15 H 0.034 0.966 16 C 0.013 3.987 17 H 0.099 0.901 18 C -0.173 4.173 19 C 0.048 3.952 20 N -0.316 5.316 21 C -0.355 4.355 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.566 5.566 25 Si 0.741 3.259 26 H -0.216 1.216 27 H -0.212 1.212 28 H -0.212 1.212 29 C 0.040 3.960 30 N -0.267 5.267 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.165 0.835 37 H 0.168 0.832 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.058 0.942 47 H 0.074 0.926 48 H 0.063 0.937 49 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -25.854 -0.612 2.622 25.994 hybrid contribution 1.107 1.008 -0.699 1.652 sum -24.747 0.396 1.923 24.825 Atomic orbital electron populations 1.21828 0.92912 1.03012 1.03318 1.22664 0.94787 0.80786 1.02854 1.86196 1.16842 1.31075 1.87090 1.20041 0.84086 0.90072 0.89974 1.20985 0.95489 0.95847 1.09449 1.21740 0.92133 0.99131 0.90909 1.20925 0.95135 0.95258 1.10794 1.17866 0.86255 0.80808 0.79492 1.90803 1.63845 1.41717 1.43735 1.47886 1.09005 1.31441 1.44193 1.22050 0.95482 0.93614 0.90975 1.21908 0.97047 1.02297 0.95565 1.21399 0.92885 0.99767 1.01451 1.20617 0.86589 0.95732 0.92034 0.96610 1.22391 0.77213 0.99411 0.99670 0.90100 1.23056 0.96515 0.99143 0.98559 1.21747 0.90846 0.97599 0.85032 1.44067 0.98548 1.70302 1.18714 1.18928 0.85723 1.33434 0.97417 0.90440 1.24808 0.96947 1.01144 0.97486 1.69935 1.14932 1.48627 1.23153 0.86228 0.80991 0.78366 0.80315 1.21627 1.21230 1.21213 1.22581 0.88539 0.96615 0.88236 1.67428 1.06291 1.32675 1.20271 0.91612 0.90194 0.91637 0.91356 0.91372 0.83525 0.83163 0.89844 0.91308 0.91795 0.90829 0.91398 0.91796 0.89394 0.92174 0.94193 0.92607 0.93668 0.81248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.16 0.38 -0.44 16 2 C 0.06 0.50 6.02 37.16 0.22 0.73 16 3 O -0.31 -3.03 10.10 -18.18 -0.18 -3.21 16 4 C 0.34 3.64 7.49 -16.96 -0.13 3.51 16 5 C -0.20 -1.78 10.02 -39.34 -0.39 -2.18 16 6 C -0.01 -0.13 7.54 -38.92 -0.29 -0.42 16 7 C -0.22 -2.65 5.29 -104.82 -0.55 -3.20 16 8 C 0.57 8.82 7.39 -12.43 -0.09 8.72 16 9 O -0.52 -9.89 13.60 5.29 0.07 -9.82 16 10 N -0.59 -8.91 2.91 -165.38 -0.48 -9.39 16 11 C 0.10 1.13 4.85 -3.45 -0.02 1.12 16 12 C -0.13 -1.58 5.92 -26.42 -0.16 -1.74 16 13 C -0.12 -1.94 5.45 -27.37 -0.15 -2.09 16 14 C 0.16 3.28 2.56 -68.66 -0.18 3.10 16 15 H 0.02 0.37 8.01 -51.93 -0.42 -0.05 16 16 C 0.12 2.17 3.33 -66.97 -0.22 1.94 16 17 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 18 C -0.13 -2.81 5.12 -25.20 -0.13 -2.94 16 19 C 0.17 4.32 5.47 -1.69 -0.01 4.31 16 20 N -0.59 -15.04 3.35 -163.63 -0.55 -15.59 16 21 C -0.23 -6.22 9.95 -15.06 -0.15 -6.37 16 22 H 0.08 2.03 7.31 -52.49 -0.38 1.64 16 23 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 24 N -0.92 -27.15 10.46 55.49 0.58 -26.57 16 25 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 C 0.20 2.40 10.78 -17.14 -0.18 2.21 16 30 N -0.54 -6.41 9.18 -12.96 -0.12 -6.53 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 35 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 36 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.15 1.13 6.35 -52.48 -0.33 0.80 16 38 H 0.08 0.77 4.76 -51.93 -0.25 0.53 16 39 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 40 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.19 7.70 -51.93 -0.40 0.79 16 43 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16 44 H 0.09 1.93 6.02 -51.93 -0.31 1.62 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.04 1.10 7.81 -51.92 -0.41 0.70 16 47 H 0.06 1.52 7.19 -51.93 -0.37 1.15 16 48 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 49 H 0.17 1.97 8.02 -52.49 -0.42 1.55 16 LS Contribution 382.36 15.07 5.76 5.76 Total: -1.00 -32.67 382.36 -9.58 -42.25 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -7.49 Total: 0.10 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -2.15 Total: 5.98 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.57 Total: -58.08 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.11 Total: -13.03 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.67 -9.58 -42.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049513994.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.270 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds