Wall clock time and date at job start Wed Apr 1 2020 05:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47312 * 2 1 4 4 C 1.35496 * 117.00324 * 180.02562 * 3 2 1 5 5 C 1.39173 * 119.52606 * 180.02562 * 4 3 2 6 6 C 1.37955 * 119.25748 * 179.72191 * 5 4 3 7 7 C 1.40281 * 118.36164 * 0.51902 * 6 5 4 8 8 C 1.47615 * 120.49994 * 179.75204 * 7 6 5 9 9 O 1.21582 * 119.99785 * 143.12829 * 8 7 6 10 10 N 1.34778 * 119.99999 * 323.12713 * 8 7 6 11 11 C 1.47848 * 122.22891 * 354.25857 * 10 8 7 12 12 C 1.52707 * 111.06358 * 232.46429 * 11 10 8 13 13 C 1.53881 * 111.52192 * 311.46242 * 12 11 10 14 14 C 1.50815 * 107.40856 * 56.70807 * 13 12 11 15 15 H 1.09002 * 107.80159 * 51.24327 * 14 13 12 16 16 C 1.45729 * 122.22463 * 174.22880 * 10 8 7 17 17 H 1.08994 * 111.07499 * 241.42273 * 16 10 8 18 18 C 1.53435 * 116.36820 * 9.93414 * 16 10 8 19 19 C 1.55467 * 101.66987 * 152.71357 * 18 16 10 20 20 N 1.45027 * 119.37386 * 175.79148 * 14 13 12 21 21 C 1.36927 * 126.56231 * 331.78573 * 20 14 13 22 22 H 1.08000 * 120.00230 * 359.71035 * 21 20 14 23 23 C 1.38814 * 119.99947 * 179.70897 * 21 20 14 24 24 N 1.31614 * 119.99997 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99928 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47344 * 180.02562 * 25 23 21 27 27 H 1.48503 * 109.47482 * 300.00269 * 25 23 21 28 28 H 1.48500 * 109.47138 * 60.00201 * 25 23 21 29 29 C 1.39523 * 119.00361 * 359.48862 * 7 6 5 30 30 N 1.31672 * 120.62501 * 0.24439 * 29 7 6 31 31 H 1.08999 * 109.47573 * 59.99406 * 1 2 3 32 32 H 1.09001 * 109.47290 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46595 * 299.99673 * 1 2 3 34 34 H 1.09004 * 109.46641 * 240.00830 * 2 1 3 35 35 H 1.08999 * 109.47573 * 120.00594 * 2 1 3 36 36 H 1.07990 * 120.36824 * 0.02562 * 5 4 3 37 37 H 1.08007 * 120.81786 * 180.27829 * 6 5 4 38 38 H 1.09004 * 109.16002 * 352.86904 * 11 10 8 39 39 H 1.09002 * 109.16466 * 112.10614 * 11 10 8 40 40 H 1.09005 * 109.07192 * 71.98601 * 12 11 10 41 41 H 1.08998 * 109.07602 * 191.00518 * 12 11 10 42 42 H 1.08996 * 109.88587 * 176.38616 * 13 12 11 43 43 H 1.08997 * 109.87877 * 297.39626 * 13 12 11 44 44 H 1.09001 * 110.98571 * 34.62176 * 18 16 10 45 45 H 1.08999 * 111.01784 * 270.82673 * 18 16 10 46 46 H 1.09008 * 109.96018 * 218.01708 * 19 18 16 47 47 H 1.09006 * 109.95674 * 96.78378 * 19 18 16 48 48 H 0.97004 * 120.00229 * 179.97438 * 24 23 21 49 49 H 1.07997 * 119.68848 * 180.27698 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3496 1.5248 -0.0005 5 6 3.8709 2.8152 0.0000 6 6 5.2394 2.9896 0.0053 7 6 6.0565 1.8494 -0.0012 8 6 7.5267 1.9812 -0.0015 9 8 8.2078 1.1933 0.6257 10 7 8.1141 2.9751 -0.6970 11 6 7.3462 3.8837 -1.5750 12 6 7.9540 3.9377 -2.9749 13 6 9.4749 4.1654 -2.9216 14 6 10.0678 3.0587 -2.0859 15 1 9.6970 2.1110 -2.4763 16 6 9.5482 3.2260 -0.6333 17 1 9.7549 4.2210 -0.2394 18 6 10.3952 2.1622 0.0775 19 6 11.7705 2.3329 -0.6271 20 7 11.5081 2.9702 -1.9411 21 6 12.4463 3.3983 -2.8419 22 1 12.1351 3.8507 -3.7719 23 6 13.7974 3.2507 -2.5599 24 7 14.1767 2.6989 -1.4268 25 14 15.0773 3.8353 -3.7885 26 1 16.4363 3.5648 -3.2543 27 1 14.8977 3.1114 -5.0727 28 1 14.9155 5.2938 -4.0157 29 6 5.4587 0.5887 -0.0018 30 7 4.1475 0.4681 -0.0012 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3632 0.5138 0.8900 34 1 1.8933 -0.5137 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.2115 3.6704 0.0012 37 1 5.6710 3.9797 0.0103 38 1 6.3178 3.5292 -1.6449 39 1 7.3508 4.8853 -1.1449 40 1 7.7525 2.9969 -3.4872 41 1 7.4923 4.7526 -3.5324 42 1 9.8898 4.1356 -3.9291 43 1 9.6895 5.1296 -2.4609 44 1 9.9910 1.1642 -0.0919 45 1 10.4739 2.3736 1.1439 46 1 12.2375 1.3588 -0.7725 47 1 12.4193 2.9710 -0.0269 48 1 15.1209 2.5954 -1.2298 49 1 6.0772 -0.2966 -0.0023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049513994.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:44 Heat of formation + Delta-G solvation = -10.784277 kcal Electronic energy + Delta-G solvation = -30834.756769 eV Core-core repulsion = 26762.753826 eV Total energy + Delta-G solvation = -4072.002943 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.19673 -41.30516 -39.54427 -38.61240 -37.01742 -34.44897 -34.09504 -33.43795 -33.02527 -31.37756 -30.49869 -29.70994 -26.65707 -26.30998 -25.40440 -24.62284 -23.34477 -22.80843 -22.49606 -21.49781 -20.54017 -19.60780 -18.69543 -17.99846 -17.75244 -17.36695 -17.06050 -16.76113 -16.28213 -16.10764 -15.70633 -15.61333 -15.44510 -15.06591 -14.94977 -14.76549 -14.49888 -14.25682 -14.19081 -13.97223 -13.61134 -13.40023 -13.29217 -13.26676 -13.14862 -12.86319 -12.67481 -12.49593 -12.29775 -12.14011 -12.01137 -11.77973 -11.72358 -11.69377 -11.59094 -11.43000 -10.96104 -10.90267 -10.73606 -10.34910 -9.70528 -9.51284 -8.90225 -7.83111 -5.20035 -0.28125 0.10997 1.45948 1.49728 1.55869 1.66645 1.86620 1.98416 2.51127 2.66608 3.13725 3.29644 3.35080 3.51765 3.76959 3.87034 3.95857 3.96680 4.00347 4.07715 4.08968 4.09726 4.20223 4.26442 4.35207 4.46414 4.57742 4.59537 4.61440 4.65838 4.72944 4.76704 4.85949 4.91760 4.96574 4.98964 5.02403 5.12174 5.16653 5.21022 5.30076 5.30180 5.43484 5.49318 5.60876 5.62208 5.74369 6.12475 6.18847 6.43447 6.66770 7.06157 7.12260 7.76511 8.46639 9.28381 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028037 B = 0.002324 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.438666 B =12043.107709 C =12509.617014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.059 3.941 3 O -0.308 6.308 4 C 0.327 3.673 5 C -0.183 4.183 6 C -0.002 4.002 7 C -0.225 4.225 8 C 0.567 3.433 9 O -0.569 6.569 10 N -0.592 5.592 11 C 0.095 3.905 12 C -0.121 4.121 13 C -0.112 4.112 14 C 0.152 3.848 15 H -0.006 1.006 16 C 0.135 3.865 17 H 0.089 0.911 18 C -0.119 4.119 19 C 0.182 3.818 20 N -0.611 5.611 21 C -0.232 4.232 22 H 0.089 0.911 23 C -0.071 4.071 24 N -0.954 5.954 25 Si 0.980 3.020 26 H -0.298 1.298 27 H -0.279 1.279 28 H -0.272 1.272 29 C 0.188 3.812 30 N -0.557 5.557 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.180 0.820 37 H 0.180 0.820 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.055 0.945 41 H 0.114 0.886 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.065 0.935 46 H -0.002 1.002 47 H 0.027 0.973 48 H 0.246 0.754 49 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.449 3.129 1.215 29.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.016 4.016 3 O -0.215 6.215 4 C 0.148 3.852 5 C -0.203 4.203 6 C -0.027 4.027 7 C -0.230 4.230 8 C 0.356 3.644 9 O -0.449 6.449 10 N -0.324 5.324 11 C -0.025 4.025 12 C -0.159 4.159 13 C -0.150 4.150 14 C 0.044 3.956 15 H 0.011 0.989 16 C 0.029 3.971 17 H 0.107 0.893 18 C -0.157 4.157 19 C 0.057 3.943 20 N -0.336 5.336 21 C -0.361 4.361 22 H 0.107 0.893 23 C -0.264 4.264 24 N -0.603 5.603 25 Si 0.808 3.192 26 H -0.224 1.224 27 H -0.205 1.205 28 H -0.197 1.197 29 C 0.031 3.969 30 N -0.281 5.281 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.198 0.802 37 H 0.197 0.803 38 H 0.129 0.871 39 H 0.120 0.880 40 H 0.074 0.926 41 H 0.133 0.867 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.016 0.984 47 H 0.045 0.955 48 H 0.055 0.945 49 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -29.523 2.074 1.506 29.634 hybrid contribution 2.111 0.094 -0.370 2.146 sum -27.411 2.168 1.136 27.520 Atomic orbital electron populations 1.21832 0.90835 1.04217 1.03556 1.22831 0.96404 0.79994 1.02344 1.86210 1.16338 1.32075 1.86838 1.20450 0.84396 0.90700 0.89687 1.21328 0.95586 0.96007 1.07408 1.21993 0.91978 0.99216 0.89508 1.20622 0.93038 0.96428 1.12959 1.18338 0.87556 0.79911 0.78585 1.90779 1.65192 1.43303 1.45632 1.47931 1.07484 1.32141 1.44810 1.22438 0.95963 0.94458 0.89642 1.21897 0.93600 1.03545 0.96876 1.21375 0.95914 0.98081 0.99658 1.20809 0.83961 0.96401 0.94402 0.98878 1.21978 0.79388 0.98454 0.97249 0.89303 1.22789 0.94658 0.99676 0.98574 1.21451 0.92604 0.94713 0.85563 1.44324 1.00771 1.70120 1.18358 1.19362 0.86373 1.32334 0.98045 0.89335 1.25710 0.99174 1.02014 0.99460 1.70174 1.14602 1.50388 1.25176 0.85135 0.77688 0.78430 0.77972 1.22442 1.20509 1.19723 1.22495 0.88806 0.96690 0.88941 1.67396 1.06045 1.33695 1.20925 0.91294 0.88553 0.91399 0.91822 0.91983 0.80243 0.80256 0.87064 0.88003 0.92598 0.86734 0.92652 0.91253 0.90647 0.91638 0.98397 0.95490 0.94495 0.82131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 71.98 0.74 -0.52 16 2 C 0.06 0.84 6.02 71.98 0.43 1.28 16 3 O -0.31 -5.37 10.10 -87.97 -0.89 -6.26 16 4 C 0.33 6.23 7.49 84.83 0.64 6.86 16 5 C -0.18 -2.52 10.02 22.43 0.22 -2.30 16 6 C 0.00 -0.03 7.54 22.70 0.17 0.14 16 7 C -0.22 -5.10 5.29 -20.00 -0.11 -5.21 16 8 C 0.57 17.10 7.39 86.72 0.64 17.74 16 9 O -0.57 -22.06 13.60 -3.97 -0.05 -22.11 16 10 N -0.59 -16.65 2.91 -795.41 -2.32 -18.97 16 11 C 0.10 1.70 4.85 86.02 0.42 2.12 16 12 C -0.12 -2.48 5.92 30.79 0.18 -2.30 16 13 C -0.11 -3.50 5.45 30.18 0.16 -3.34 16 14 C 0.15 6.29 2.56 45.30 0.12 6.41 16 15 H -0.01 -0.28 8.01 -2.39 -0.02 -0.30 16 16 C 0.13 4.92 3.33 46.03 0.15 5.07 16 17 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 18 C -0.12 -5.19 5.12 31.59 0.16 -5.03 16 19 C 0.18 9.74 5.47 86.87 0.48 10.22 16 20 N -0.61 -32.17 3.35 -671.60 -2.25 -34.42 16 21 C -0.23 -13.01 9.95 84.04 0.84 -12.17 16 22 H 0.09 4.64 7.31 -2.91 -0.02 4.62 16 23 C -0.07 -4.10 5.49 84.86 0.47 -3.64 16 24 N -0.95 -59.16 10.46 21.65 0.23 -58.93 16 25 Si 0.98 46.18 29.55 68.60 2.03 48.21 16 26 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 27 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 28 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 29 C 0.19 4.48 10.78 85.03 0.92 5.40 16 30 N -0.56 -12.55 9.18 -307.82 -2.82 -15.37 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 35 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 36 H 0.18 1.33 8.06 -2.92 -0.02 1.30 16 37 H 0.18 1.62 6.35 -2.91 -0.02 1.60 16 38 H 0.11 1.45 4.76 -2.38 -0.01 1.44 16 39 H 0.10 1.27 8.09 -2.39 -0.02 1.25 16 40 H 0.06 1.26 8.13 -2.38 -0.02 1.25 16 41 H 0.11 1.53 8.14 -2.39 -0.02 1.52 16 42 H 0.05 1.86 7.70 -2.39 -0.02 1.84 16 43 H 0.07 2.11 8.12 -2.39 -0.02 2.09 16 44 H 0.08 3.52 6.02 -2.39 -0.01 3.51 16 45 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 46 H 0.00 -0.14 7.81 -2.38 -0.02 -0.15 16 47 H 0.03 1.57 7.19 -2.38 -0.02 1.56 16 48 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 49 H 0.16 3.95 8.02 -2.91 -0.02 3.92 16 Total: -1.00 -76.75 382.36 1.50 -75.25 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.95 Total: 11.88 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 6.63 Total: 20.73 kcal Atomic # 7 Polarization: -120.52 SS G_CDS: -7.17 Total: -127.69 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.94 Total: -28.37 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -76.75 1.50 -75.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049513994.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.465 kcal (2) G-P(sol) polarization free energy of solvation -76.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds