Wall clock time and date at job start Wed Apr 1 2020 05:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42893 * 109.47395 * 2 1 4 4 C 1.35503 * 117.00083 * 179.97438 * 3 2 1 5 5 C 1.39169 * 119.52602 * 179.97438 * 4 3 2 6 6 C 1.37955 * 119.26171 * 180.02562 * 5 4 3 7 7 C 1.40282 * 118.35934 * 0.02562 * 6 5 4 8 8 C 1.47613 * 120.49589 * 179.97438 * 7 6 5 9 9 O 1.21586 * 119.99709 * 138.39974 * 8 7 6 10 10 N 1.34778 * 120.00136 * 318.40041 * 8 7 6 11 11 C 1.46797 * 119.57776 * 354.15837 * 10 8 7 12 12 C 1.51355 * 107.77028 * 231.57692 * 11 10 8 13 13 C 1.52743 * 109.55203 * 302.59570 * 12 11 10 14 14 C 1.53011 * 110.76279 * 62.88836 * 13 12 11 15 15 H 1.08999 * 111.39077 * 69.74417 * 14 13 12 16 16 C 1.45121 * 119.57364 * 174.14033 * 10 8 7 17 17 H 1.08999 * 109.97273 * 11.94341 * 16 10 8 18 18 C 1.54420 * 111.60464 * 248.65923 * 16 10 8 19 19 C 1.54570 * 102.44908 * 203.41783 * 18 16 10 20 20 N 1.48214 * 107.10787 * 191.95237 * 14 13 12 21 21 C 1.36943 * 125.76372 * 270.80901 * 20 14 13 22 22 H 1.07999 * 120.00148 * 0.02562 * 21 20 14 23 23 C 1.38813 * 120.00058 * 179.97438 * 21 20 14 24 24 N 1.31622 * 119.99861 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 120.00087 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47555 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47228 * 120.00226 * 25 23 21 28 28 H 1.48506 * 109.47352 * 240.00353 * 25 23 21 29 29 C 1.39519 * 119.00165 * 0.25541 * 7 6 5 30 30 N 1.31666 * 120.63119 * 359.47037 * 29 7 6 31 31 H 1.09002 * 109.46782 * 300.00095 * 1 2 3 32 32 H 1.08998 * 109.46935 * 59.99749 * 1 2 3 33 33 H 1.08999 * 109.47284 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47260 * 239.99696 * 2 1 3 35 35 H 1.09005 * 109.47321 * 120.00290 * 2 1 3 36 36 H 1.07999 * 120.36574 * 0.02562 * 5 4 3 37 37 H 1.07997 * 120.81854 * 179.97438 * 6 5 4 38 38 H 1.08996 * 109.83695 * 351.55952 * 11 10 8 39 39 H 1.09002 * 109.82940 * 112.45207 * 11 10 8 40 40 H 1.09003 * 109.78863 * 182.14075 * 12 11 10 41 41 H 1.08997 * 108.38317 * 62.19670 * 12 11 10 42 42 H 1.08998 * 109.21287 * 302.56633 * 13 12 11 43 43 H 1.09005 * 109.20536 * 183.20274 * 13 12 11 44 44 H 1.08999 * 110.81454 * 321.66125 * 18 16 10 45 45 H 1.09008 * 110.81250 * 85.18124 * 18 16 10 46 46 H 1.09000 * 109.88470 * 141.08597 * 19 18 16 47 47 H 1.08996 * 109.88439 * 262.10971 * 19 18 16 48 48 H 0.96991 * 119.99885 * 179.97438 * 24 23 21 49 49 H 1.08007 * 119.68548 * 179.72777 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3497 1.5247 0.0005 5 6 3.8710 2.8150 0.0000 6 6 5.2395 2.9894 0.0000 7 6 6.0566 1.8491 0.0000 8 6 7.5268 1.9810 -0.0005 9 8 8.2028 1.2512 0.6985 10 7 8.1198 2.9104 -0.7759 11 6 7.3082 3.6987 -1.7112 12 6 7.9563 3.6070 -3.0759 13 6 9.3975 4.1060 -2.9918 14 6 10.2250 3.2191 -2.0591 15 1 10.3927 2.2334 -2.4930 16 6 9.5523 3.1191 -0.6751 17 1 10.0062 2.3140 -0.0973 18 6 9.8843 4.4927 -0.0525 19 6 11.3110 4.7627 -0.5824 20 7 11.5026 3.9262 -1.8051 21 6 12.6414 3.8167 -2.5578 22 1 12.6569 3.1702 -3.4228 23 6 13.7754 4.5377 -2.2098 24 7 13.7563 5.3260 -1.1560 25 14 15.3284 4.3889 -3.2369 26 1 15.0913 3.4460 -4.3594 27 1 15.6925 5.7223 -3.7798 28 1 16.4363 3.8805 -2.3886 29 6 5.4586 0.5886 -0.0054 30 7 4.1475 0.4679 0.0000 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.2116 3.6703 -0.0004 37 1 5.6711 3.9794 -0.0008 38 1 6.2950 3.2988 -1.7496 39 1 7.2826 4.7404 -1.3914 40 1 7.3996 4.2136 -3.7903 41 1 7.9475 2.5637 -3.3912 42 1 9.4018 5.1278 -2.6125 43 1 9.8407 4.0912 -3.9876 44 1 9.1897 5.2555 -0.4043 45 1 9.8799 4.4358 1.0361 46 1 11.4188 5.8172 -0.8364 47 1 12.0458 4.4866 0.1739 48 1 14.5488 5.8295 -0.9126 49 1 6.0772 -0.2968 -0.0100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049514000.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:56 Heat of formation + Delta-G solvation = -18.771849 kcal Electronic energy + Delta-G solvation = -30730.467472 eV Core-core repulsion = 26658.118162 eV Total energy + Delta-G solvation = -4072.349310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.22740 -41.27833 -39.61854 -38.68203 -36.82414 -34.42354 -33.86187 -33.48054 -33.03154 -31.34230 -30.65308 -29.74180 -26.75489 -26.08367 -25.36738 -24.80202 -23.43644 -23.07368 -22.08194 -21.70980 -19.76682 -19.54336 -18.83547 -18.53421 -17.86060 -17.40015 -17.26277 -16.77355 -16.28273 -15.93287 -15.69575 -15.65339 -15.14170 -15.09016 -14.88532 -14.82635 -14.49988 -14.37521 -14.06856 -13.82446 -13.65762 -13.50130 -13.33019 -13.28068 -13.06742 -12.83820 -12.63023 -12.49209 -12.34361 -12.29240 -12.04956 -11.95246 -11.72091 -11.68157 -11.49395 -11.22127 -11.18244 -10.88260 -10.74440 -10.65148 -9.75506 -9.53209 -8.88428 -7.85142 -5.18925 -0.27473 0.11268 1.45193 1.46452 1.56128 1.59681 1.83866 1.98248 2.49595 2.64349 3.14553 3.33349 3.38141 3.52214 3.76006 3.85146 3.89474 3.97065 4.00633 4.06291 4.08887 4.10094 4.16586 4.22779 4.37282 4.47332 4.56726 4.59222 4.61086 4.67778 4.73109 4.78944 4.84362 4.87626 4.97413 4.97687 4.98852 5.07323 5.19055 5.21649 5.30131 5.36068 5.39641 5.55151 5.60411 5.64407 5.72921 6.13078 6.15977 6.34520 6.66325 7.04118 7.06786 7.72786 8.42130 9.27029 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.031483 B = 0.002218 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.153108 B =12619.018380 C =12729.922012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 O -0.308 6.308 4 C 0.328 3.672 5 C -0.183 4.183 6 C 0.000 4.000 7 C -0.224 4.224 8 C 0.565 3.435 9 O -0.581 6.581 10 N -0.582 5.582 11 C 0.097 3.903 12 C -0.125 4.125 13 C -0.117 4.117 14 C 0.148 3.852 15 H 0.043 0.957 16 C 0.146 3.854 17 H 0.070 0.930 18 C -0.131 4.131 19 C 0.187 3.813 20 N -0.620 5.620 21 C -0.230 4.230 22 H 0.081 0.919 23 C -0.067 4.067 24 N -0.951 5.951 25 Si 0.975 3.025 26 H -0.267 1.267 27 H -0.291 1.291 28 H -0.296 1.296 29 C 0.189 3.811 30 N -0.555 5.555 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.179 0.821 37 H 0.176 0.824 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.047 0.953 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.017 0.983 47 H 0.010 0.990 48 H 0.246 0.754 49 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.057 -4.440 -0.121 29.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 O -0.215 6.215 4 C 0.149 3.851 5 C -0.203 4.203 6 C -0.025 4.025 7 C -0.230 4.230 8 C 0.354 3.646 9 O -0.462 6.462 10 N -0.312 5.312 11 C -0.023 4.023 12 C -0.164 4.164 13 C -0.157 4.157 14 C 0.041 3.959 15 H 0.061 0.939 16 C 0.041 3.959 17 H 0.089 0.911 18 C -0.170 4.170 19 C 0.062 3.938 20 N -0.345 5.345 21 C -0.359 4.359 22 H 0.099 0.901 23 C -0.260 4.260 24 N -0.600 5.600 25 Si 0.804 3.196 26 H -0.191 1.191 27 H -0.218 1.218 28 H -0.223 1.223 29 C 0.032 3.968 30 N -0.279 5.279 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.196 0.804 37 H 0.193 0.807 38 H 0.132 0.868 39 H 0.111 0.889 40 H 0.124 0.876 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.108 0.892 45 H 0.089 0.911 46 H 0.035 0.965 47 H 0.029 0.971 48 H 0.055 0.945 49 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -29.104 -5.368 0.206 29.595 hybrid contribution 2.269 0.400 -0.228 2.315 sum -26.835 -4.968 -0.022 27.291 Atomic orbital electron populations 1.21835 0.90926 1.04212 1.03519 1.22835 0.96348 0.79962 1.02415 1.86215 1.16347 1.32129 1.86802 1.20423 0.84397 0.90641 0.89608 1.21302 0.95519 0.96068 1.07438 1.21914 0.92009 0.99131 0.89459 1.20525 0.92705 0.96524 1.13198 1.18468 0.87745 0.79303 0.79092 1.90786 1.66330 1.45112 1.43970 1.47520 1.07079 1.37307 1.39294 1.22067 0.95139 0.96951 0.88174 1.21524 0.95129 1.02235 0.97479 1.21879 0.95143 0.99477 0.99178 1.21529 0.86283 0.94590 0.93483 0.93852 1.21289 0.80115 0.97587 0.96939 0.91129 1.22910 0.97341 0.96677 1.00035 1.21260 0.91630 0.93510 0.87408 1.45447 1.08680 1.50662 1.29721 1.19394 0.88925 1.21428 1.06107 0.90127 1.25587 1.01012 0.99772 0.99623 1.70136 1.28726 1.32633 1.28539 0.85048 0.79442 0.77138 0.77947 1.19102 1.21823 1.22318 1.22507 0.88829 0.96542 0.88934 1.67405 1.06024 1.33562 1.20907 0.91482 0.91315 0.88527 0.91665 0.91951 0.80403 0.80671 0.86753 0.88860 0.87648 0.92204 0.92483 0.93432 0.89201 0.91084 0.96514 0.97125 0.94460 0.81817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 71.98 0.74 -0.45 16 2 C 0.06 0.80 6.02 71.98 0.43 1.23 16 3 O -0.31 -5.21 10.10 -88.05 -0.89 -6.10 16 4 C 0.33 6.02 7.49 84.83 0.64 6.66 16 5 C -0.18 -2.49 10.02 22.43 0.22 -2.26 16 6 C 0.00 0.00 7.50 22.70 0.17 0.17 16 7 C -0.22 -4.87 5.02 -20.00 -0.10 -4.97 16 8 C 0.56 16.54 7.28 86.72 0.63 17.18 16 9 O -0.58 -22.43 16.28 -3.99 -0.06 -22.49 16 10 N -0.58 -16.07 2.73 -802.02 -2.19 -18.26 16 11 C 0.10 1.82 4.56 85.78 0.39 2.21 16 12 C -0.13 -2.69 5.95 29.97 0.18 -2.51 16 13 C -0.12 -3.78 5.13 30.51 0.16 -3.62 16 14 C 0.15 5.98 3.54 45.08 0.16 6.13 16 15 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 16 C 0.15 5.33 3.13 46.14 0.14 5.48 16 17 H 0.07 3.07 6.93 -2.39 -0.02 3.05 16 18 C -0.13 -4.76 6.08 31.61 0.19 -4.56 16 19 C 0.19 9.15 5.29 86.35 0.46 9.60 16 20 N -0.62 -31.51 2.99 -661.21 -1.98 -33.48 16 21 C -0.23 -12.86 10.31 84.03 0.87 -12.00 16 22 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 23 C -0.07 -3.84 5.49 84.86 0.47 -3.38 16 24 N -0.95 -57.54 10.52 21.65 0.23 -57.32 16 25 Si 0.98 46.33 29.55 68.60 2.03 48.36 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 28 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 29 C 0.19 4.21 10.82 85.03 0.92 5.13 16 30 N -0.56 -11.81 9.18 -307.80 -2.82 -14.64 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 35 H 0.06 0.90 8.10 -2.38 -0.02 0.88 16 36 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 37 H 0.18 1.72 6.74 -2.91 -0.02 1.70 16 38 H 0.11 1.56 4.82 -2.39 -0.01 1.55 16 39 H 0.09 1.42 7.47 -2.39 -0.02 1.40 16 40 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 1.93 7.15 -2.39 -0.02 1.91 16 43 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 44 H 0.09 2.76 6.83 -2.39 -0.02 2.74 16 45 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 46 H 0.02 0.89 7.68 -2.39 -0.02 0.87 16 47 H 0.01 0.59 7.39 -2.39 -0.02 0.57 16 48 H 0.25 14.50 8.31 -92.72 -0.77 13.73 16 49 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -74.58 385.20 1.92 -72.65 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.95 Total: 11.24 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 6.67 Total: 20.03 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -6.77 Total: -123.70 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.95 Total: -28.59 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -74.58 1.92 -72.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049514000.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.883 kcal (2) G-P(sol) polarization free energy of solvation -74.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds