Wall clock time and date at job start Wed Apr 1 2020 05:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47046 * 2 1 4 4 C 1.35501 * 116.99633 * 180.02562 * 3 2 1 5 5 C 1.39168 * 119.51892 * 179.97438 * 4 3 2 6 6 C 1.37957 * 119.25880 * 180.02562 * 5 4 3 7 7 C 1.40280 * 118.35796 * 0.02562 * 6 5 4 8 8 C 1.47619 * 120.49781 * 179.97438 * 7 6 5 9 9 O 1.21581 * 120.00305 * 31.82831 * 8 7 6 10 10 N 1.34780 * 119.99837 * 211.83588 * 8 7 6 11 11 C 1.47852 * 122.22579 * 357.83743 * 10 8 7 12 12 C 1.52719 * 111.05468 * 127.24522 * 11 10 8 13 13 C 1.53869 * 111.52318 * 48.53479 * 12 11 10 14 14 C 1.51079 * 107.34755 * 303.06816 * 13 12 11 15 15 H 1.09000 * 108.73957 * 309.16107 * 14 13 12 16 16 C 1.45726 * 122.22344 * 177.55434 * 10 8 7 17 17 H 1.09000 * 111.07008 * 119.73932 * 16 10 8 18 18 C 1.53426 * 116.37749 * 350.37118 * 16 10 8 19 19 C 1.55470 * 101.67355 * 207.27060 * 18 16 10 20 20 N 1.45024 * 119.19925 * 183.88608 * 14 13 12 21 21 C 1.36931 * 126.56085 * 28.74569 * 20 14 13 22 22 H 1.08005 * 120.00043 * 4.35171 * 21 20 14 23 23 C 1.38813 * 120.00451 * 184.35177 * 21 20 14 24 24 N 1.31618 * 119.99554 * 6.83261 * 23 21 20 25 25 Si 1.86797 * 120.00244 * 186.83313 * 23 21 20 26 26 H 1.48496 * 109.47069 * 84.98890 * 25 23 21 27 27 H 1.48501 * 109.46920 * 204.98701 * 25 23 21 28 28 H 1.48499 * 109.47462 * 324.98708 * 25 23 21 29 29 C 1.39518 * 119.00506 * 0.24811 * 7 6 5 30 30 N 1.31671 * 120.62627 * 359.47991 * 29 7 6 31 31 H 1.09001 * 109.46968 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47063 * 299.99791 * 1 2 3 33 33 H 1.09000 * 109.47483 * 60.00153 * 1 2 3 34 34 H 1.08995 * 109.46982 * 239.99465 * 2 1 3 35 35 H 1.09000 * 109.47483 * 119.99847 * 2 1 3 36 36 H 1.08000 * 120.37347 * 0.04283 * 5 4 3 37 37 H 1.08003 * 120.81913 * 179.97438 * 6 5 4 38 38 H 1.09004 * 109.16111 * 247.64299 * 11 10 8 39 39 H 1.08993 * 109.16364 * 6.83814 * 11 10 8 40 40 H 1.08997 * 109.07043 * 169.06519 * 12 11 10 41 41 H 1.09004 * 109.06401 * 288.08180 * 12 11 10 42 42 H 1.08996 * 109.88494 * 62.53271 * 13 12 11 43 43 H 1.09001 * 109.87877 * 183.61157 * 13 12 11 44 44 H 1.08996 * 110.99141 * 89.17101 * 18 16 10 45 45 H 1.09008 * 111.01698 * 325.38018 * 18 16 10 46 46 H 1.08996 * 109.95998 * 263.21889 * 19 18 16 47 47 H 1.09007 * 109.96184 * 141.97814 * 19 18 16 48 48 H 0.97003 * 120.00099 * 180.02562 * 24 23 21 49 49 H 1.08001 * 119.68875 * 179.72729 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3496 1.5248 -0.0005 5 6 3.8708 2.8152 -0.0011 6 6 5.2393 2.9897 -0.0022 7 6 6.0564 1.8494 -0.0032 8 6 7.5267 1.9813 -0.0050 9 8 8.0529 2.9266 0.5497 10 7 8.2857 1.0538 -0.6217 11 6 7.7009 -0.1390 -1.2707 12 6 8.1833 -0.2703 -2.7138 13 6 9.7113 -0.1198 -2.8141 14 6 10.0723 1.2196 -2.2156 15 1 9.4455 1.9867 -2.6703 16 6 9.7368 1.1631 -0.6982 17 1 10.2198 0.3135 -0.2155 18 6 10.3449 2.4964 -0.2437 19 6 11.6550 2.5458 -1.0794 20 7 11.4525 1.6632 -2.2549 21 6 12.3896 1.3307 -3.1962 22 1 12.1084 0.7325 -4.0504 23 6 13.7011 1.7623 -3.0528 24 7 14.0754 2.3747 -1.9495 25 14 14.9348 1.4739 -4.4255 26 1 14.8326 2.5707 -5.4213 27 1 16.3074 1.4455 -3.8594 28 1 14.6452 0.1762 -5.0868 29 6 5.4586 0.5888 -0.0084 30 7 4.1474 0.4682 -0.0020 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 3.2114 3.6705 -0.0004 37 1 5.6709 3.9797 -0.0031 38 1 7.9932 -1.0290 -0.7135 39 1 6.6143 -0.0539 -1.2631 40 1 7.8959 -1.2491 -3.0977 41 1 7.7098 0.5027 -3.3192 42 1 10.2000 -0.9188 -2.2565 43 1 10.0193 -0.1539 -3.8592 44 1 10.5633 2.4821 0.8241 45 1 9.6899 3.3307 -0.4950 46 1 12.4914 2.1835 -0.4818 47 1 11.8476 3.5667 -1.4094 48 1 14.9917 2.6767 -1.8494 49 1 6.0771 -0.2965 -0.0137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049514003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:04 Heat of formation + Delta-G solvation = 23.746105 kcal Electronic energy + Delta-G solvation = -30934.205516 eV Core-core repulsion = 26863.699923 eV Total energy + Delta-G solvation = -4070.505593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.27564 -40.15821 -38.44444 -37.48472 -35.56670 -32.89984 -32.68455 -32.60381 -32.06982 -30.50683 -28.81299 -28.23583 -25.41485 -24.84106 -24.36283 -23.51292 -22.67228 -21.51029 -20.98299 -19.80726 -19.28330 -18.82895 -17.53042 -16.85257 -16.66517 -16.48939 -15.50781 -15.41550 -15.10215 -14.72528 -14.54756 -14.29485 -14.24499 -13.91528 -13.88536 -13.54900 -13.36480 -13.06478 -12.91474 -12.71538 -12.62203 -12.46133 -12.26108 -11.95522 -11.78904 -11.55882 -11.19326 -11.05814 -10.84233 -10.72089 -10.51460 -10.46748 -10.22627 -10.11138 -9.99156 -9.98467 -9.82956 -9.62793 -9.11681 -8.75122 -8.61360 -8.26383 -6.82233 -5.67633 -3.05185 0.56514 0.90498 2.63374 2.81250 3.06029 3.40712 3.45576 3.47343 3.56731 3.88383 4.37344 4.49706 4.54035 4.62099 4.62316 4.74386 4.79139 4.82663 5.00006 5.05715 5.21146 5.26112 5.31494 5.35306 5.42030 5.43064 5.48297 5.56980 5.60728 5.66388 5.75257 5.83198 5.86408 5.97912 6.03775 6.08898 6.24577 6.29045 6.38337 6.55031 6.71584 6.77544 6.86728 6.89126 7.16057 7.42617 7.52375 7.62992 7.68872 7.85428 8.27054 8.33402 9.19075 9.83613 10.51663 11.41334 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025867 B = 0.002413 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.182745 B =11600.138400 C =12275.735334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.065 3.935 3 O -0.305 6.305 4 C 0.336 3.664 5 C -0.195 4.195 6 C 0.013 3.987 7 C -0.214 4.214 8 C 0.567 3.433 9 O -0.526 6.526 10 N -0.591 5.591 11 C 0.082 3.918 12 C -0.129 4.129 13 C -0.115 4.115 14 C 0.158 3.842 15 H 0.017 0.983 16 C 0.116 3.884 17 H 0.083 0.917 18 C -0.127 4.127 19 C 0.164 3.836 20 N -0.591 5.591 21 C -0.226 4.226 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.917 5.917 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.156 3.844 30 N -0.543 5.543 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.030 0.970 48 H 0.252 0.748 49 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.755 -5.979 4.108 25.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.212 6.212 4 C 0.158 3.842 5 C -0.216 4.216 6 C -0.013 4.013 7 C -0.220 4.220 8 C 0.354 3.646 9 O -0.403 6.403 10 N -0.324 5.324 11 C -0.041 4.041 12 C -0.168 4.168 13 C -0.154 4.154 14 C 0.049 3.951 15 H 0.035 0.965 16 C 0.012 3.988 17 H 0.100 0.900 18 C -0.165 4.165 19 C 0.039 3.961 20 N -0.315 5.315 21 C -0.354 4.354 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.565 5.565 25 Si 0.741 3.259 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.208 1.208 29 C 0.000 4.000 30 N -0.267 5.267 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.165 0.835 37 H 0.170 0.830 38 H 0.091 0.909 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.097 0.903 46 H 0.089 0.911 47 H 0.048 0.952 48 H 0.063 0.937 49 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -24.846 -6.060 4.376 25.946 hybrid contribution 1.102 0.359 -0.802 1.410 sum -23.744 -5.701 3.574 24.679 Atomic orbital electron populations 1.21829 0.92935 1.02998 1.03349 1.22657 0.94800 0.80821 1.02785 1.86207 1.16825 1.31022 1.87111 1.20031 0.84022 0.90073 0.90100 1.21029 0.95541 0.95853 1.09151 1.21496 0.91515 0.99319 0.88965 1.20929 0.95251 0.95158 1.10648 1.17833 0.85387 0.82358 0.79008 1.90806 1.73329 1.31658 1.44514 1.47906 1.07676 1.22933 1.53846 1.22531 0.99250 0.87800 0.94490 1.21904 0.97499 1.02062 0.95317 1.21430 0.93248 0.98693 1.02014 1.20790 0.88390 0.93789 0.92140 0.96541 1.22489 0.77090 0.99828 0.99376 0.89960 1.22917 0.98312 0.95505 0.99803 1.21870 0.92947 0.94064 0.87183 1.44098 1.05604 1.53573 1.28230 1.18962 0.88111 1.28619 0.99749 0.90409 1.24815 0.96993 1.01085 0.97526 1.69928 1.17142 1.44443 1.24943 0.86166 0.80764 0.77761 0.81222 1.21625 1.21737 1.20766 1.23278 0.89243 0.97062 0.90433 1.67399 1.06198 1.32798 1.20320 0.90200 0.91636 0.91602 0.91360 0.91408 0.83459 0.82984 0.90862 0.88539 0.90786 0.91835 0.91657 0.91435 0.91904 0.90251 0.91093 0.95193 0.93712 0.80168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.28 37.16 0.38 -0.42 16 2 C 0.06 0.49 6.02 37.16 0.22 0.71 16 3 O -0.30 -3.03 10.10 -18.20 -0.18 -3.21 16 4 C 0.34 3.66 7.49 -16.96 -0.13 3.53 16 5 C -0.20 -1.95 10.02 -39.34 -0.39 -2.35 16 6 C 0.01 0.14 9.73 -38.92 -0.38 -0.24 16 7 C -0.21 -2.69 5.60 -104.82 -0.59 -3.28 16 8 C 0.57 8.91 7.44 -12.43 -0.09 8.81 16 9 O -0.53 -9.96 13.69 5.29 0.07 -9.89 16 10 N -0.59 -9.01 2.91 -165.18 -0.48 -9.50 16 11 C 0.08 0.93 4.96 -3.44 -0.02 0.91 16 12 C -0.13 -1.59 5.92 -26.42 -0.16 -1.75 16 13 C -0.12 -1.93 5.46 -27.25 -0.15 -2.08 16 14 C 0.16 3.25 2.58 -68.36 -0.18 3.07 16 15 H 0.02 0.38 8.04 -51.93 -0.42 -0.04 16 16 C 0.12 2.17 3.33 -66.80 -0.22 1.95 16 17 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 18 C -0.13 -2.66 4.98 -25.20 -0.13 -2.79 16 19 C 0.16 4.10 5.59 -1.69 -0.01 4.09 16 20 N -0.59 -14.99 3.35 -163.28 -0.55 -15.53 16 21 C -0.23 -6.19 9.91 -15.06 -0.15 -6.34 16 22 H 0.08 2.04 7.37 -52.48 -0.39 1.65 16 23 C -0.01 -0.21 5.46 -17.43 -0.10 -0.31 16 24 N -0.92 -26.99 10.54 55.49 0.58 -26.40 16 25 Si 0.91 22.03 29.56 -169.99 -5.02 17.01 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 C 0.16 1.69 8.73 -17.14 -0.15 1.54 16 30 N -0.54 -6.00 9.18 -12.97 -0.12 -6.12 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 35 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 36 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.15 1.60 8.01 -52.48 -0.42 1.18 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.93 3.64 -51.94 -0.19 0.74 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.10 8.12 -51.93 -0.42 0.67 16 43 H 0.07 1.19 7.72 -51.93 -0.40 0.79 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.08 1.73 6.27 -51.92 -0.33 1.41 16 46 H 0.07 1.95 6.77 -51.93 -0.35 1.60 16 47 H 0.03 0.82 8.10 -51.93 -0.42 0.39 16 48 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 49 H 0.18 1.61 5.21 -52.49 -0.27 1.33 16 LS Contribution 381.09 15.07 5.74 5.74 Total: -1.00 -32.60 381.09 -9.57 -42.17 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.39 Total: 0.66 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -2.22 Total: 5.08 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.56 Total: -57.55 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.11 Total: -13.10 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.60 -9.57 -42.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049514003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.912 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds