Wall clock time and date at job start Wed Apr 1 2020 05:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47046 * 2 1 4 4 C 1.35501 * 116.99633 * 180.02562 * 3 2 1 5 5 C 1.39168 * 119.51892 * 179.97438 * 4 3 2 6 6 C 1.37957 * 119.25880 * 180.02562 * 5 4 3 7 7 C 1.40280 * 118.35796 * 0.02562 * 6 5 4 8 8 C 1.47619 * 120.49781 * 179.97438 * 7 6 5 9 9 O 1.21581 * 120.00305 * 31.82831 * 8 7 6 10 10 N 1.34780 * 119.99837 * 211.83588 * 8 7 6 11 11 C 1.47852 * 122.22579 * 357.83743 * 10 8 7 12 12 C 1.52719 * 111.05468 * 127.24522 * 11 10 8 13 13 C 1.53869 * 111.52318 * 48.53479 * 12 11 10 14 14 C 1.51079 * 107.34755 * 303.06816 * 13 12 11 15 15 H 1.09000 * 108.73957 * 309.16107 * 14 13 12 16 16 C 1.45726 * 122.22344 * 177.55434 * 10 8 7 17 17 H 1.09000 * 111.07008 * 119.73932 * 16 10 8 18 18 C 1.53426 * 116.37749 * 350.37118 * 16 10 8 19 19 C 1.55470 * 101.67355 * 207.27060 * 18 16 10 20 20 N 1.45024 * 119.19925 * 183.88608 * 14 13 12 21 21 C 1.36931 * 126.56085 * 28.74569 * 20 14 13 22 22 H 1.08005 * 120.00043 * 4.35171 * 21 20 14 23 23 C 1.38813 * 120.00451 * 184.35177 * 21 20 14 24 24 N 1.31618 * 119.99554 * 6.83261 * 23 21 20 25 25 Si 1.86797 * 120.00244 * 186.83313 * 23 21 20 26 26 H 1.48496 * 109.47069 * 84.98890 * 25 23 21 27 27 H 1.48501 * 109.46920 * 204.98701 * 25 23 21 28 28 H 1.48499 * 109.47462 * 324.98708 * 25 23 21 29 29 C 1.39518 * 119.00506 * 0.24811 * 7 6 5 30 30 N 1.31671 * 120.62627 * 359.47991 * 29 7 6 31 31 H 1.09001 * 109.46968 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47063 * 299.99791 * 1 2 3 33 33 H 1.09000 * 109.47483 * 60.00153 * 1 2 3 34 34 H 1.08995 * 109.46982 * 239.99465 * 2 1 3 35 35 H 1.09000 * 109.47483 * 119.99847 * 2 1 3 36 36 H 1.08000 * 120.37347 * 0.04283 * 5 4 3 37 37 H 1.08003 * 120.81913 * 179.97438 * 6 5 4 38 38 H 1.09004 * 109.16111 * 247.64299 * 11 10 8 39 39 H 1.08993 * 109.16364 * 6.83814 * 11 10 8 40 40 H 1.08997 * 109.07043 * 169.06519 * 12 11 10 41 41 H 1.09004 * 109.06401 * 288.08180 * 12 11 10 42 42 H 1.08996 * 109.88494 * 62.53271 * 13 12 11 43 43 H 1.09001 * 109.87877 * 183.61157 * 13 12 11 44 44 H 1.08996 * 110.99141 * 89.17101 * 18 16 10 45 45 H 1.09008 * 111.01698 * 325.38018 * 18 16 10 46 46 H 1.08996 * 109.95998 * 263.21889 * 19 18 16 47 47 H 1.09007 * 109.96184 * 141.97814 * 19 18 16 48 48 H 0.97003 * 120.00099 * 180.02562 * 24 23 21 49 49 H 1.08001 * 119.68875 * 179.72729 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3496 1.5248 -0.0005 5 6 3.8708 2.8152 -0.0011 6 6 5.2393 2.9897 -0.0022 7 6 6.0564 1.8494 -0.0032 8 6 7.5267 1.9813 -0.0050 9 8 8.0529 2.9266 0.5497 10 7 8.2857 1.0538 -0.6217 11 6 7.7009 -0.1390 -1.2707 12 6 8.1833 -0.2703 -2.7138 13 6 9.7113 -0.1198 -2.8141 14 6 10.0723 1.2196 -2.2156 15 1 9.4455 1.9867 -2.6703 16 6 9.7368 1.1631 -0.6982 17 1 10.2198 0.3135 -0.2155 18 6 10.3449 2.4964 -0.2437 19 6 11.6550 2.5458 -1.0794 20 7 11.4525 1.6632 -2.2549 21 6 12.3896 1.3307 -3.1962 22 1 12.1084 0.7325 -4.0504 23 6 13.7011 1.7623 -3.0528 24 7 14.0754 2.3747 -1.9495 25 14 14.9348 1.4739 -4.4255 26 1 14.8326 2.5707 -5.4213 27 1 16.3074 1.4455 -3.8594 28 1 14.6452 0.1762 -5.0868 29 6 5.4586 0.5888 -0.0084 30 7 4.1474 0.4682 -0.0020 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 3.2114 3.6705 -0.0004 37 1 5.6709 3.9797 -0.0031 38 1 7.9932 -1.0290 -0.7135 39 1 6.6143 -0.0539 -1.2631 40 1 7.8959 -1.2491 -3.0977 41 1 7.7098 0.5027 -3.3192 42 1 10.2000 -0.9188 -2.2565 43 1 10.0193 -0.1539 -3.8592 44 1 10.5633 2.4821 0.8241 45 1 9.6899 3.3307 -0.4950 46 1 12.4914 2.1835 -0.4818 47 1 11.8476 3.5667 -1.4094 48 1 14.9917 2.6767 -1.8494 49 1 6.0771 -0.2965 -0.0137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049514003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:02 Heat of formation + Delta-G solvation = 2.208859 kcal Electronic energy + Delta-G solvation = -30935.139441 eV Core-core repulsion = 26863.699923 eV Total energy + Delta-G solvation = -4071.439518 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.27900 -41.28915 -39.54642 -38.65626 -37.04650 -34.36180 -33.98801 -33.65376 -33.01576 -31.59793 -30.47854 -29.64814 -26.68665 -26.40006 -25.45440 -24.57390 -23.41512 -22.85705 -22.39614 -21.52251 -20.56128 -19.60908 -18.80139 -18.17466 -17.77721 -17.35580 -17.10016 -16.71241 -16.42001 -16.09556 -15.81246 -15.55214 -15.18272 -15.15464 -14.91830 -14.74302 -14.50505 -14.25745 -14.17976 -13.97893 -13.71166 -13.37682 -13.31971 -13.23806 -13.13218 -12.86265 -12.71464 -12.48111 -12.26598 -12.07436 -11.92051 -11.79797 -11.72025 -11.66458 -11.55816 -11.46633 -11.05134 -10.88464 -10.75816 -10.44181 -9.68844 -9.51811 -8.90108 -7.81242 -5.21431 -0.32845 0.07938 1.45925 1.48725 1.56461 1.67747 1.85981 1.96483 2.50693 2.65075 3.10219 3.26915 3.34309 3.49830 3.70910 3.86251 3.94324 3.96132 3.97060 4.06122 4.07331 4.12795 4.22468 4.23640 4.32936 4.49314 4.53234 4.56199 4.58172 4.63119 4.65879 4.72903 4.87041 4.89203 4.98753 4.98997 5.03228 5.12702 5.14955 5.21478 5.28439 5.28916 5.39718 5.48844 5.55818 5.62656 5.75011 6.12743 6.20053 6.42627 6.60040 7.05323 7.10671 7.76008 8.45910 9.27243 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025867 B = 0.002413 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.182745 B =11600.138400 C =12275.735334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.059 3.941 3 O -0.310 6.310 4 C 0.333 3.667 5 C -0.190 4.190 6 C 0.008 3.992 7 C -0.229 4.229 8 C 0.565 3.435 9 O -0.568 6.568 10 N -0.591 5.591 11 C 0.077 3.923 12 C -0.120 4.120 13 C -0.111 4.111 14 C 0.152 3.848 15 H -0.001 1.001 16 C 0.132 3.868 17 H 0.086 0.914 18 C -0.110 4.110 19 C 0.173 3.827 20 N -0.610 5.610 21 C -0.231 4.231 22 H 0.088 0.912 23 C -0.070 4.070 24 N -0.951 5.951 25 Si 0.978 3.022 26 H -0.290 1.290 27 H -0.296 1.296 28 H -0.264 1.264 29 C 0.166 3.834 30 N -0.546 5.546 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.169 0.831 37 H 0.152 0.848 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.042 0.958 47 H -0.008 1.008 48 H 0.246 0.754 49 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.812 -8.529 3.400 29.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.016 4.016 3 O -0.217 6.217 4 C 0.154 3.846 5 C -0.211 4.211 6 C -0.017 4.017 7 C -0.235 4.235 8 C 0.355 3.645 9 O -0.448 6.448 10 N -0.323 5.323 11 C -0.043 4.043 12 C -0.158 4.158 13 C -0.149 4.149 14 C 0.043 3.957 15 H 0.016 0.984 16 C 0.027 3.973 17 H 0.104 0.896 18 C -0.149 4.149 19 C 0.047 3.953 20 N -0.334 5.334 21 C -0.360 4.360 22 H 0.106 0.894 23 C -0.263 4.263 24 N -0.600 5.600 25 Si 0.806 3.194 26 H -0.217 1.217 27 H -0.223 1.223 28 H -0.188 1.188 29 C 0.009 3.991 30 N -0.270 5.270 31 H 0.117 0.883 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.187 0.813 37 H 0.170 0.830 38 H 0.120 0.880 39 H 0.139 0.861 40 H 0.132 0.868 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.060 0.940 47 H 0.010 0.990 48 H 0.055 0.945 49 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -27.979 -8.656 3.644 29.513 hybrid contribution 1.917 1.180 -0.579 2.324 sum -26.062 -7.476 3.065 27.286 Atomic orbital electron populations 1.21846 0.91181 1.04277 1.03336 1.22885 0.96194 0.79723 1.02812 1.86222 1.16236 1.32539 1.86696 1.20281 0.84519 0.90361 0.89442 1.21208 0.95143 0.96525 1.08196 1.21584 0.92090 0.99168 0.88892 1.20685 0.93058 0.96568 1.13164 1.18297 0.86698 0.81493 0.78060 1.90780 1.74366 1.33325 1.46366 1.47944 1.05962 1.24257 1.54118 1.22891 1.00502 0.87007 0.93947 1.21885 0.93632 1.04191 0.96098 1.21405 0.96749 0.95909 1.00848 1.20968 0.85381 0.95437 0.93864 0.98352 1.22069 0.79643 0.98089 0.97478 0.89629 1.22649 0.96136 0.97039 0.99048 1.21593 0.94229 0.91902 0.87557 1.44342 1.07333 1.53885 1.27872 1.19370 0.88586 1.27758 1.00297 0.89408 1.25695 0.99084 1.01620 0.99876 1.70156 1.16995 1.45985 1.26907 0.85099 0.77834 0.78181 0.78261 1.21709 1.22309 1.18830 1.23512 0.89349 0.96911 0.89291 1.67476 1.06079 1.32849 1.20577 0.88282 0.91659 0.91585 0.91218 0.91442 0.81317 0.83022 0.87980 0.86069 0.86817 0.92297 0.91432 0.92516 0.91608 0.91212 0.94027 0.99003 0.94473 0.77980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 71.98 0.74 -0.43 16 2 C 0.06 0.73 6.02 71.98 0.43 1.17 16 3 O -0.31 -5.39 10.10 -88.02 -0.89 -6.28 16 4 C 0.33 6.38 7.49 84.83 0.64 7.01 16 5 C -0.19 -3.40 10.02 22.43 0.22 -3.17 16 6 C 0.01 0.17 9.73 22.70 0.22 0.39 16 7 C -0.23 -5.35 5.60 -20.00 -0.11 -5.46 16 8 C 0.56 17.31 7.44 86.72 0.64 17.95 16 9 O -0.57 -21.88 13.69 -3.97 -0.05 -21.94 16 10 N -0.59 -17.11 2.91 -794.76 -2.31 -19.42 16 11 C 0.08 1.46 4.96 86.03 0.43 1.89 16 12 C -0.12 -2.52 5.92 30.79 0.18 -2.34 16 13 C -0.11 -3.51 5.46 30.26 0.17 -3.34 16 14 C 0.15 6.26 2.58 45.50 0.12 6.37 16 15 H 0.00 -0.04 8.04 -2.39 -0.02 -0.06 16 16 C 0.13 4.93 3.33 46.14 0.15 5.08 16 17 H 0.09 3.16 8.14 -2.39 -0.02 3.15 16 18 C -0.11 -4.83 4.98 31.59 0.16 -4.67 16 19 C 0.17 9.19 5.59 86.87 0.49 9.67 16 20 N -0.61 -31.99 3.35 -670.49 -2.25 -34.24 16 21 C -0.23 -12.91 9.91 84.03 0.83 -12.07 16 22 H 0.09 4.61 7.37 -2.91 -0.02 4.58 16 23 C -0.07 -4.02 5.46 84.86 0.46 -3.56 16 24 N -0.95 -58.54 10.54 21.65 0.23 -58.32 16 25 Si 0.98 46.12 29.56 68.60 2.03 48.14 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 27 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 28 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 29 C 0.17 3.07 8.73 85.03 0.74 3.81 16 30 N -0.55 -10.39 9.18 -307.83 -2.82 -13.22 16 31 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 0.86 8.10 -2.39 -0.02 0.84 16 35 H 0.07 0.85 8.10 -2.39 -0.02 0.84 16 36 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 37 H 0.15 3.16 8.01 -2.91 -0.02 3.13 16 38 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.12 1.79 3.64 -2.39 -0.01 1.79 16 40 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 43 H 0.06 1.91 7.72 -2.39 -0.02 1.89 16 44 H 0.07 2.80 8.14 -2.39 -0.02 2.79 16 45 H 0.07 3.20 6.27 -2.38 -0.01 3.19 16 46 H 0.04 2.44 6.77 -2.39 -0.02 2.42 16 47 H -0.01 -0.49 8.10 -2.38 -0.02 -0.51 16 48 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 49 H 0.20 2.72 5.21 -2.91 -0.02 2.71 16 Total: -1.00 -74.76 381.09 1.40 -73.37 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.96 Total: 13.59 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 6.51 Total: 18.30 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -7.16 Total: -125.19 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.94 Total: -28.22 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.14 kcal Total: -74.76 1.40 -73.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049514003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.575 kcal (2) G-P(sol) polarization free energy of solvation -74.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds