Wall clock time and date at job start Wed Apr 1 2020 05:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.46936 * 2 1 4 4 C 1.35687 * 116.99858 * 180.02562 * 3 2 1 5 5 C 1.38889 * 119.62426 * 180.02562 * 4 3 2 6 6 C 1.39573 * 118.94990 * 179.97438 * 5 4 3 7 7 C 1.48160 * 120.89516 * 179.97438 * 6 5 4 8 8 O 1.21518 * 120.00190 * 217.20730 * 7 6 5 9 9 N 1.34775 * 120.00192 * 37.20543 * 7 6 5 10 10 C 1.45735 * 117.75761 * 5.85151 * 9 7 6 11 11 C 1.53059 * 109.55876 * 141.08256 * 10 9 7 12 12 C 1.52948 * 108.49237 * 53.79788 * 11 10 9 13 13 C 1.52926 * 109.78954 * 294.00767 * 12 11 10 14 14 H 1.08992 * 110.51617 * 292.90232 * 13 12 11 15 15 C 1.44186 * 117.76211 * 185.58258 * 9 7 6 16 16 H 1.08995 * 109.23499 * 333.41608 * 15 9 7 17 17 C 1.54567 * 111.47598 * 93.66577 * 15 9 7 18 18 C 1.54066 * 103.67398 * 153.28393 * 17 15 9 19 19 N 1.46890 * 107.70388 * 342.84781 * 18 17 15 20 20 C 1.36939 * 125.58004 * 177.00629 * 19 18 17 21 21 H 1.08004 * 119.99441 * 180.02562 * 20 19 18 22 22 C 1.38807 * 119.99881 * 0.02562 * 20 19 18 23 23 N 1.31615 * 120.00265 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99808 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46962 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47520 * 119.99909 * 24 22 20 27 27 H 1.48497 * 109.46910 * 240.00091 * 24 22 20 28 28 C 1.39968 * 118.21400 * 0.02562 * 6 5 4 29 29 C 1.37976 * 119.13535 * 0.02562 * 28 6 5 30 30 N 1.31916 * 120.97664 * 359.73992 * 29 28 6 31 31 H 1.09000 * 109.47795 * 59.99817 * 1 2 3 32 32 H 1.09001 * 109.47046 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47082 * 299.99575 * 1 2 3 34 34 H 1.09002 * 109.46790 * 239.99980 * 2 1 3 35 35 H 1.08996 * 109.46927 * 120.00317 * 2 1 3 36 36 H 1.08001 * 120.52985 * 359.96245 * 5 4 3 37 37 H 1.09000 * 109.45395 * 261.10276 * 10 9 7 38 38 H 1.08995 * 109.46163 * 21.05187 * 10 9 7 39 39 H 1.08998 * 109.63422 * 173.49714 * 11 10 9 40 40 H 1.08996 * 109.62728 * 293.89732 * 11 10 9 41 41 H 1.08990 * 109.42023 * 54.10788 * 12 11 10 42 42 H 1.09003 * 109.40994 * 173.91360 * 12 11 10 43 43 H 1.09003 * 110.62850 * 34.74010 * 17 15 9 44 44 H 1.09002 * 110.71673 * 271.87614 * 17 15 9 45 45 H 1.08996 * 109.81238 * 223.29905 * 18 17 15 46 46 H 1.08998 * 109.80740 * 102.39064 * 18 17 15 47 47 H 0.97007 * 119.99965 * 179.97438 * 23 22 20 48 48 H 1.07997 * 120.43188 * 179.97438 * 28 6 5 49 49 H 1.07996 * 119.51182 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3515 1.5251 -0.0005 5 6 3.8739 2.8119 0.0000 6 6 5.2596 2.9785 0.0000 7 6 5.8632 4.3316 -0.0001 8 8 6.8762 4.5451 -0.6365 9 7 5.2888 5.3258 0.7057 10 6 4.1529 4.9876 1.5537 11 6 4.2373 5.7772 2.8622 12 6 4.3701 7.2630 2.5245 13 6 5.7070 7.5179 1.8270 14 1 6.5351 7.3486 2.5151 15 6 5.8438 6.6501 0.5745 16 1 6.8970 6.5729 0.3047 17 6 5.1097 7.4661 -0.5137 18 6 5.3068 8.9277 -0.0680 19 7 5.7106 8.9134 1.3442 20 6 6.0372 10.0140 2.0907 21 1 6.3229 9.8989 3.1259 22 6 6.0011 11.2774 1.5169 23 7 5.6534 11.4175 0.2552 24 14 6.4474 12.7787 2.5350 25 1 6.8002 12.3547 3.9138 26 1 7.6077 13.4690 1.9168 27 1 5.2884 13.7058 2.5840 28 6 6.0638 1.8330 -0.0011 29 6 5.4634 0.5907 -0.0027 30 7 4.1496 0.4716 0.0020 31 1 -0.3635 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.2183 3.6702 0.0002 37 1 3.2266 5.2390 1.0371 38 1 4.1681 3.9199 1.7724 39 1 3.3323 5.6142 3.4474 40 1 5.1062 5.4491 3.4324 41 1 3.5548 7.5589 1.8644 42 1 4.3227 7.8488 3.4425 43 1 4.0500 7.2119 -0.5350 44 1 5.5621 7.2996 -1.4914 45 1 4.3721 9.4771 -0.1795 46 1 6.0856 9.3956 -0.6701 47 1 5.6278 12.3005 -0.1456 48 1 7.1403 1.9203 -0.0016 49 1 6.0781 -0.2973 -0.0040 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049710796.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:14 Heat of formation + Delta-G solvation = -16.173616 kcal Electronic energy + Delta-G solvation = -31036.170727 eV Core-core repulsion = 26963.934085 eV Total energy + Delta-G solvation = -4072.236642 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.36601 -41.29431 -39.64593 -38.74855 -37.05489 -34.57306 -34.03093 -33.46572 -32.99168 -31.03468 -30.79595 -29.90894 -27.06576 -26.26184 -25.30679 -24.54360 -23.69681 -23.28460 -22.17746 -21.67159 -19.99487 -19.27495 -18.83261 -18.16679 -17.83811 -17.28941 -17.06283 -16.91634 -16.79784 -16.25107 -16.04142 -15.39247 -15.32729 -15.05312 -14.93548 -14.87385 -14.81335 -14.32983 -14.15689 -13.85011 -13.62961 -13.44140 -13.29040 -13.14370 -13.02723 -12.84465 -12.69048 -12.43475 -12.37582 -12.30592 -12.04778 -11.97531 -11.72987 -11.67657 -11.60537 -11.38918 -11.22838 -10.93354 -10.71899 -10.62014 -9.75385 -9.55936 -8.92349 -7.84842 -5.21557 -0.36275 0.07879 1.45727 1.46988 1.52161 1.57018 1.71293 2.01772 2.48987 2.67967 3.12302 3.30240 3.34153 3.54265 3.79020 3.81485 3.86712 3.88348 3.97949 4.05504 4.07742 4.09924 4.14631 4.21394 4.30783 4.49816 4.51044 4.55186 4.58985 4.61550 4.67047 4.74544 4.80115 4.87629 4.92926 5.00253 5.00515 5.01964 5.16897 5.22973 5.30721 5.33218 5.40438 5.52554 5.57369 5.61549 5.72598 6.17202 6.18819 6.20712 6.71637 6.89912 7.08413 7.74788 8.38738 9.25315 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020349 B = 0.002551 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.666856 B =10974.297981 C =11540.757141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.315 6.315 4 C 0.314 3.686 5 C -0.164 4.164 6 C -0.053 4.053 7 C 0.550 3.450 8 O -0.565 6.565 9 N -0.574 5.574 10 C 0.099 3.901 11 C -0.121 4.121 12 C -0.121 4.121 13 C 0.157 3.843 14 H 0.051 0.949 15 C 0.152 3.848 16 H 0.071 0.929 17 C -0.136 4.136 18 C 0.192 3.808 19 N -0.615 5.615 20 C -0.233 4.233 21 H 0.085 0.915 22 C -0.067 4.067 23 N -0.952 5.952 24 Si 0.978 3.022 25 H -0.264 1.264 26 H -0.295 1.295 27 H -0.292 1.292 28 C -0.162 4.162 29 C 0.149 3.851 30 N -0.535 5.535 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.159 0.841 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.011 0.989 46 H 0.012 0.988 47 H 0.246 0.754 48 H 0.153 0.847 49 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.640 -27.085 2.550 28.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.222 6.222 4 C 0.135 3.865 5 C -0.185 4.185 6 C -0.064 4.064 7 C 0.339 3.661 8 O -0.444 6.444 9 N -0.304 5.304 10 C -0.022 4.022 11 C -0.160 4.160 12 C -0.161 4.161 13 C 0.050 3.950 14 H 0.069 0.931 15 C 0.046 3.954 16 H 0.089 0.911 17 C -0.175 4.175 18 C 0.066 3.934 19 N -0.340 5.340 20 C -0.362 4.362 21 H 0.103 0.897 22 C -0.260 4.260 23 N -0.601 5.601 24 Si 0.807 3.193 25 H -0.188 1.188 26 H -0.223 1.223 27 H -0.219 1.219 28 C -0.183 4.183 29 C -0.006 4.006 30 N -0.259 5.259 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.176 0.824 37 H 0.100 0.900 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.029 0.971 46 H 0.031 0.969 47 H 0.055 0.945 48 H 0.171 0.829 49 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -8.734 -27.329 2.237 28.777 hybrid contribution 0.857 2.273 -0.029 2.430 sum -7.876 -25.055 2.208 26.357 Atomic orbital electron populations 1.21849 0.91398 1.04200 1.03294 1.22818 0.96004 0.79818 1.02594 1.86251 1.16130 1.32334 1.87522 1.19684 0.84673 0.89449 0.92653 1.21446 0.94148 0.97202 1.05665 1.19934 0.93512 0.93168 0.99745 1.18764 0.83216 0.84821 0.79316 1.90780 1.25467 1.83592 1.44571 1.46981 1.32512 1.06746 1.44123 1.22180 0.87777 1.01199 0.91067 1.21830 1.04109 0.93533 0.96514 1.21918 0.97524 0.96446 1.00163 1.21032 0.96956 0.83901 0.93093 0.93134 1.20737 0.97520 0.81204 0.95937 0.91133 1.22913 1.00648 0.95818 0.98137 1.20719 0.96805 0.91012 0.84819 1.44757 1.79529 1.01249 1.08422 1.19428 1.37820 0.84821 0.94114 0.89713 1.25649 1.02466 1.00370 0.97487 1.70198 1.55360 1.21797 1.12775 0.85007 0.76793 0.79268 0.78247 1.18797 1.22257 1.21926 1.22264 1.02266 0.91757 1.02024 1.22943 0.88598 0.97804 0.91303 1.67305 1.07450 1.33140 1.18021 0.91895 0.88269 0.91559 0.91689 0.91243 0.82355 0.89996 0.87468 0.87618 0.91113 0.93047 0.92701 0.90569 0.91802 0.97092 0.96930 0.94458 0.82922 0.77985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 71.98 0.74 -0.64 16 2 C 0.06 0.84 6.03 71.98 0.43 1.27 16 3 O -0.31 -5.90 10.11 -90.06 -0.91 -6.81 16 4 C 0.31 6.22 7.49 84.80 0.63 6.85 16 5 C -0.16 -3.31 7.51 22.75 0.17 -3.14 16 6 C -0.05 -1.21 5.02 -19.90 -0.10 -1.31 16 7 C 0.55 16.61 7.31 86.88 0.63 17.25 16 8 O -0.56 -21.50 16.17 -3.77 -0.06 -21.56 16 9 N -0.57 -16.86 2.79 -804.99 -2.25 -19.10 16 10 C 0.10 2.14 4.65 86.54 0.40 2.54 16 11 C -0.12 -2.74 6.10 30.60 0.19 -2.55 16 12 C -0.12 -3.98 5.31 30.55 0.16 -3.82 16 13 C 0.16 6.34 3.27 44.74 0.15 6.48 16 14 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 15 C 0.15 5.68 2.81 45.95 0.13 5.81 16 16 H 0.07 3.02 7.00 -2.39 -0.02 3.00 16 17 C -0.14 -5.44 6.46 31.49 0.20 -5.24 16 18 C 0.19 9.79 5.39 86.67 0.47 10.26 16 19 N -0.61 -31.44 2.94 -672.39 -1.97 -33.42 16 20 C -0.23 -12.95 10.27 84.03 0.86 -12.08 16 21 H 0.09 4.49 7.83 -2.91 -0.02 4.46 16 22 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 23 N -0.95 -57.97 10.29 21.65 0.22 -57.74 16 24 Si 0.98 46.04 29.55 68.60 2.03 48.07 16 25 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 26 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 27 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 28 C -0.16 -3.03 9.74 22.63 0.22 -2.81 16 29 C 0.15 2.20 11.17 84.62 0.94 3.15 16 30 N -0.53 -9.74 9.18 -309.14 -2.84 -12.58 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.88 8.10 -2.39 -0.02 0.86 16 35 H 0.07 0.88 8.10 -2.39 -0.02 0.87 16 36 H 0.16 2.95 5.83 -2.91 -0.02 2.93 16 37 H 0.08 1.60 7.23 -2.39 -0.02 1.59 16 38 H 0.11 1.90 5.27 -2.39 -0.01 1.89 16 39 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.05 1.82 8.02 -2.39 -0.02 1.80 16 42 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 44 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.01 0.61 7.60 -2.39 -0.02 0.59 16 46 H 0.01 0.73 7.25 -2.39 -0.02 0.71 16 47 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 48 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 49 H 0.20 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -72.80 386.57 1.87 -70.92 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.95 Total: 13.56 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 6.71 Total: 18.66 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -6.84 Total: -122.84 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.97 Total: -28.36 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -72.80 1.87 -70.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049710796.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.748 kcal (2) G-P(sol) polarization free energy of solvation -72.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds