Wall clock time and date at job start Wed Apr 1 2020 05:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42894 * 109.46852 * 2 1 4 4 C 1.35684 * 117.00155 * 180.02562 * 3 2 1 5 5 C 1.38897 * 119.62791 * 180.02562 * 4 3 2 6 6 C 1.39568 * 118.94945 * 179.97438 * 5 4 3 7 7 C 1.48160 * 120.89166 * 179.97438 * 6 5 4 8 8 O 1.21517 * 120.00004 * 323.42656 * 7 6 5 9 9 N 1.34779 * 119.99961 * 143.42789 * 7 6 5 10 10 C 1.45734 * 117.75971 * 354.08736 * 9 7 6 11 11 C 1.53059 * 109.55562 * 218.89240 * 10 9 7 12 12 C 1.52937 * 108.49244 * 306.19660 * 11 10 9 13 13 C 1.52303 * 109.85178 * 65.96884 * 12 11 10 14 14 H 1.09002 * 110.92935 * 66.59922 * 13 12 11 15 15 C 1.44189 * 117.76169 * 174.10389 * 9 7 6 16 16 H 1.09007 * 109.22519 * 27.36670 * 15 9 7 17 17 C 1.54060 * 111.76850 * 266.46711 * 15 9 7 18 18 C 1.54062 * 103.74313 * 206.73947 * 17 15 9 19 19 N 1.46891 * 107.70314 * 17.12824 * 18 17 15 20 20 C 1.36939 * 125.57545 * 182.96787 * 19 18 17 21 21 H 1.08000 * 119.99604 * 180.02562 * 20 19 18 22 22 C 1.38811 * 120.00462 * 0.02818 * 20 19 18 23 23 N 1.31617 * 119.99737 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00123 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46996 * 270.00273 * 24 22 20 26 26 H 1.48500 * 109.46939 * 30.00218 * 24 22 20 27 27 H 1.48501 * 109.47114 * 150.00118 * 24 22 20 28 28 C 1.39965 * 118.21558 * 0.26970 * 6 5 4 29 29 C 1.37980 * 119.13353 * 359.48358 * 28 6 5 30 30 N 1.31903 * 120.97707 * 0.53016 * 29 28 6 31 31 H 1.08993 * 109.47119 * 60.00192 * 1 2 3 32 32 H 1.09005 * 109.47172 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47147 * 299.99566 * 1 2 3 34 34 H 1.09004 * 109.46868 * 239.99993 * 2 1 3 35 35 H 1.08993 * 109.47119 * 119.99808 * 2 1 3 36 36 H 1.08007 * 120.52036 * 359.97209 * 5 4 3 37 37 H 1.09008 * 109.45517 * 338.91477 * 10 9 7 38 38 H 1.09000 * 109.45914 * 98.88307 * 10 9 7 39 39 H 1.09006 * 109.62968 * 65.90023 * 11 10 9 40 40 H 1.08994 * 109.63063 * 186.49167 * 11 10 9 41 41 H 1.08999 * 109.41770 * 186.08787 * 12 11 10 42 42 H 1.08999 * 109.41728 * 305.95526 * 12 11 10 43 43 H 1.08997 * 110.57473 * 88.17703 * 17 15 9 44 44 H 1.09005 * 110.70071 * 325.36124 * 17 15 9 45 45 H 1.09002 * 109.80705 * 257.58491 * 18 17 15 46 46 H 1.08991 * 109.81279 * 136.67810 * 18 17 15 47 47 H 0.97003 * 120.00088 * 179.97438 * 23 22 20 48 48 H 1.08004 * 120.43329 * 179.72480 * 28 6 5 49 49 H 1.08004 * 119.50930 * 180.23141 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3514 1.5251 -0.0005 5 6 3.8739 2.8121 0.0000 6 6 5.2596 2.9787 0.0000 7 6 5.8631 4.3318 -0.0001 8 8 5.3387 5.2309 -0.6272 9 7 6.9937 4.5654 0.6954 10 6 7.5087 3.4909 1.5345 11 6 8.0537 4.0764 2.8394 12 6 9.0679 5.1681 2.4951 13 6 8.3627 6.3319 1.8109 14 1 7.6822 6.8336 2.4989 15 6 7.6107 5.8614 0.5585 16 1 6.8469 6.5981 0.3093 17 6 8.6939 5.8657 -0.5370 18 6 9.6550 6.9865 -0.0969 19 7 9.3895 7.2722 1.3193 20 6 9.9990 8.2470 2.0632 21 1 9.7340 8.3784 3.1019 22 6 10.9573 9.0662 1.4824 23 7 11.2805 8.9057 0.2167 24 14 11.7881 10.3964 2.4971 25 1 11.0082 11.6560 2.3956 26 1 11.8531 9.9675 3.9173 27 1 13.1635 10.6231 1.9851 28 6 6.0638 1.8331 -0.0064 29 6 5.4634 0.5908 -0.0015 30 7 4.1498 0.4717 -0.0014 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8901 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.2181 3.6703 0.0003 37 1 6.7056 2.7889 1.7590 38 1 8.3091 2.9709 1.0080 39 1 7.2356 4.5057 3.4180 40 1 8.5422 3.2917 3.4170 41 1 9.5451 5.5208 3.4094 42 1 9.8250 4.7610 1.8249 43 1 8.2557 6.0963 -1.5080 44 1 9.2125 4.9075 -0.5698 45 1 9.4772 7.8811 -0.6939 46 1 10.6868 6.6580 -0.2204 47 1 11.9499 9.4784 -0.1894 48 1 7.1403 1.9205 -0.0111 49 1 6.0782 -0.2972 -0.0025 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049710797.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:21 Heat of formation + Delta-G solvation = 4.361653 kcal Electronic energy + Delta-G solvation = -30793.612156 eV Core-core repulsion = 26722.265990 eV Total energy + Delta-G solvation = -4071.346166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.31505 -40.24776 -38.43197 -37.74617 -35.55259 -33.10174 -32.70282 -32.46202 -31.98913 -30.25017 -29.07079 -28.38419 -25.83181 -24.50499 -24.25660 -23.63308 -22.91211 -22.00917 -20.80810 -20.07539 -18.81888 -18.12392 -17.50507 -16.96233 -16.63098 -16.38696 -16.18341 -15.67745 -15.18012 -14.79668 -14.59674 -14.28527 -14.24268 -14.15345 -13.82149 -13.75715 -13.47737 -13.17411 -12.94190 -12.68119 -12.56072 -12.23184 -12.11196 -12.01515 -11.85669 -11.46499 -11.16336 -11.03369 -10.98943 -10.79132 -10.69895 -10.59630 -10.38803 -10.12146 -10.09371 -10.03747 -9.68064 -9.63022 -9.56481 -8.78575 -8.62391 -8.41876 -6.89360 -5.73329 -3.08257 0.55110 0.85012 2.52762 2.75186 3.06788 3.39047 3.44010 3.45769 3.50611 3.95708 4.21241 4.46088 4.62525 4.65951 4.67607 4.72249 4.78685 4.93501 5.02255 5.05784 5.20843 5.30999 5.32268 5.38937 5.41307 5.47290 5.48130 5.51472 5.58835 5.64709 5.68307 5.80290 5.84087 5.94250 6.01235 6.03628 6.18360 6.26201 6.33091 6.51522 6.53452 6.69876 6.90798 6.93624 7.03579 7.38626 7.49203 7.54500 7.60896 7.81052 8.12555 8.23340 9.18693 9.78403 10.42920 11.37532 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028724 B = 0.002274 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.562706 B =12308.133539 C =12486.636664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.067 3.933 3 O -0.305 6.305 4 C 0.321 3.679 5 C -0.139 4.139 6 C -0.042 4.042 7 C 0.548 3.452 8 O -0.523 6.523 9 N -0.575 5.575 10 C 0.102 3.898 11 C -0.133 4.133 12 C -0.130 4.130 13 C 0.162 3.838 14 H 0.055 0.945 15 C 0.133 3.867 16 H 0.096 0.904 17 C -0.151 4.151 18 C 0.180 3.820 19 N -0.595 5.595 20 C -0.228 4.228 21 H 0.078 0.922 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.913 3.087 25 H -0.289 1.289 26 H -0.281 1.281 27 H -0.291 1.291 28 C -0.185 4.185 29 C 0.136 3.864 30 N -0.531 5.531 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.150 0.850 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.041 0.959 47 H 0.253 0.747 48 H 0.150 0.850 49 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.308 -20.945 1.085 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.009 4.009 3 O -0.213 6.213 4 C 0.142 3.858 5 C -0.160 4.160 6 C -0.052 4.052 7 C 0.335 3.665 8 O -0.400 6.400 9 N -0.306 5.306 10 C -0.021 4.021 11 C -0.171 4.171 12 C -0.171 4.171 13 C 0.053 3.947 14 H 0.073 0.927 15 C 0.029 3.971 16 H 0.114 0.886 17 C -0.190 4.190 18 C 0.055 3.945 19 N -0.320 5.320 20 C -0.356 4.356 21 H 0.096 0.904 22 C -0.203 4.203 23 N -0.567 5.567 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.207 1.207 27 H -0.217 1.217 28 C -0.205 4.205 29 C -0.019 4.019 30 N -0.255 5.255 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.168 0.832 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.168 0.832 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -14.962 -20.863 0.723 25.683 hybrid contribution 1.060 1.189 0.450 1.655 sum -13.901 -19.674 1.173 24.119 Atomic orbital electron populations 1.21832 0.92960 1.02903 1.03460 1.22618 0.94794 0.80907 1.02534 1.86256 1.16526 1.30799 1.87671 1.19592 0.84197 0.89418 0.92589 1.21082 0.94389 0.96407 1.04133 1.20163 0.93213 0.94289 0.97573 1.18301 0.80805 0.87040 0.80379 1.90805 1.61539 1.44566 1.43061 1.46975 1.24609 1.14844 1.44190 1.21906 0.99026 0.89224 0.91897 1.21873 0.99953 0.99408 0.95899 1.22003 0.97784 0.95785 1.01481 1.20822 0.90837 0.90512 0.92539 0.92731 1.21263 0.95842 0.82598 0.97356 0.88646 1.23005 0.97400 1.00730 0.97862 1.21066 0.94898 0.93633 0.84945 1.44499 1.43635 1.36162 1.07692 1.19006 1.15806 1.07361 0.93395 0.90388 1.24809 0.99513 0.99664 0.96328 1.69966 1.35114 1.40865 1.10761 0.86113 0.78706 0.81843 0.79038 1.21577 1.20710 1.21703 1.22447 1.02074 0.92334 1.03693 1.22369 0.88903 0.97173 0.93464 1.67194 1.06882 1.33252 1.18217 0.91566 0.90269 0.91578 0.91563 0.91545 0.83183 0.89811 0.91492 0.91616 0.90891 0.91685 0.91862 0.91887 0.92491 0.92857 0.94093 0.93700 0.83233 0.81676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 2 C 0.07 0.54 6.03 37.16 0.22 0.76 16 3 O -0.31 -3.37 10.11 -18.75 -0.19 -3.56 16 4 C 0.32 3.75 7.49 -17.16 -0.13 3.62 16 5 C -0.14 -1.72 9.67 -38.84 -0.38 -2.09 16 6 C -0.04 -0.52 5.03 -104.68 -0.53 -1.04 16 7 C 0.55 8.52 7.31 -12.18 -0.09 8.43 16 8 O -0.52 -10.05 16.17 5.35 0.09 -9.96 16 9 N -0.58 -8.59 2.80 -168.41 -0.47 -9.06 16 10 C 0.10 1.17 4.64 -4.42 -0.02 1.14 16 11 C -0.13 -1.63 6.10 -26.73 -0.16 -1.79 16 12 C -0.13 -2.17 5.30 -27.12 -0.14 -2.32 16 13 C 0.16 3.20 3.25 -67.41 -0.22 2.98 16 14 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 15 C 0.13 2.45 2.79 -68.36 -0.19 2.26 16 16 H 0.10 1.97 7.02 -51.93 -0.36 1.61 16 17 C -0.15 -2.90 6.44 -25.62 -0.17 -3.07 16 18 C 0.18 4.31 5.39 -3.27 -0.02 4.29 16 19 N -0.60 -14.64 2.95 -163.96 -0.48 -15.12 16 20 C -0.23 -6.15 10.27 -15.06 -0.15 -6.30 16 21 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 22 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 23 N -0.92 -26.66 10.29 55.49 0.57 -26.09 16 24 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 C -0.18 -1.76 7.57 -39.03 -0.30 -2.06 16 29 C 0.14 1.17 11.17 -17.62 -0.20 0.98 16 30 N -0.53 -5.64 9.18 -13.38 -0.12 -5.76 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 34 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.07 0.52 8.10 -51.93 -0.42 0.09 16 36 H 0.15 1.87 8.06 -52.48 -0.42 1.45 16 37 H 0.08 0.81 5.26 -51.92 -0.27 0.53 16 38 H 0.07 0.68 7.21 -51.93 -0.37 0.31 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.12 8.01 -51.93 -0.42 0.71 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.05 1.44 7.25 -51.93 -0.38 1.06 16 46 H 0.04 1.07 7.60 -51.93 -0.39 0.68 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.15 1.19 5.80 -52.48 -0.30 0.88 16 49 H 0.17 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 386.49 15.07 5.82 5.82 Total: -1.00 -32.11 386.49 -9.53 -41.63 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -7.54 Total: 0.27 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -2.18 Total: 4.99 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.51 Total: -56.03 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.10 Total: -13.52 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.11 -9.53 -41.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049710797.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.996 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds