Wall clock time and date at job start Wed Apr 1 2020 05:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42903 * 109.46803 * 2 1 4 4 C 1.35430 * 116.99753 * 180.02562 * 3 2 1 5 5 N 1.32241 * 119.79807 * 359.97438 * 4 3 2 6 6 C 1.31883 * 121.79537 * 180.02562 * 5 4 3 7 7 C 1.38355 * 121.18978 * 359.97438 * 6 5 4 8 8 C 1.38343 * 119.45492 * 359.78555 * 7 6 5 9 9 C 1.39981 * 118.34907 * 0.48333 * 8 7 6 10 10 C 1.47529 * 120.59731 * 179.75283 * 9 8 7 11 11 O 1.21588 * 119.99630 * 225.54986 * 10 9 8 12 12 N 1.34772 * 119.99848 * 45.54630 * 10 9 8 13 13 C 1.47844 * 122.22989 * 5.38836 * 12 10 9 14 14 C 1.52722 * 111.06131 * 127.48571 * 13 12 10 15 15 C 1.53869 * 111.51768 * 48.54030 * 14 13 12 16 16 C 1.51081 * 107.34584 * 303.06885 * 15 14 13 17 17 H 1.09005 * 108.73128 * 309.15750 * 16 15 14 18 18 C 1.45729 * 122.22449 * 185.36308 * 12 10 9 19 19 H 1.08997 * 111.64183 * 119.17302 * 18 12 10 20 20 C 1.53431 * 116.37252 * 350.12541 * 18 12 10 21 21 C 1.55470 * 101.66779 * 207.26854 * 20 18 12 22 22 N 1.45021 * 119.20176 * 183.89179 * 16 15 14 23 23 C 1.36936 * 126.55838 * 28.74972 * 22 16 15 24 24 H 1.08003 * 120.00126 * 352.81174 * 23 22 16 25 25 C 1.38818 * 120.00065 * 172.81006 * 23 22 16 26 26 N 1.31616 * 119.99952 * 352.59577 * 25 23 22 27 27 Si 1.86800 * 119.99879 * 172.59659 * 25 23 22 28 28 H 1.48508 * 109.47179 * 94.98954 * 27 25 23 29 29 H 1.48502 * 109.46744 * 214.98178 * 27 25 23 30 30 H 1.48489 * 109.47340 * 334.98651 * 27 25 23 31 31 H 1.09001 * 109.47431 * 59.99990 * 1 2 3 32 32 H 1.09001 * 109.46976 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47353 * 299.99759 * 1 2 3 34 34 H 1.09001 * 109.47353 * 240.00241 * 2 1 3 35 35 H 1.08997 * 109.47114 * 120.00390 * 2 1 3 36 36 H 1.08004 * 119.40620 * 180.02562 * 6 5 4 37 37 H 1.08000 * 120.27337 * 180.02562 * 7 6 5 38 38 H 1.07994 * 120.82388 * 180.23006 * 8 7 6 39 39 H 1.09004 * 109.16630 * 247.89642 * 13 12 10 40 40 H 1.09005 * 109.16285 * 7.13452 * 13 12 10 41 41 H 1.08994 * 109.06932 * 288.01693 * 14 13 12 42 42 H 1.09000 * 109.06800 * 169.06235 * 14 13 12 43 43 H 1.09001 * 109.87889 * 183.61262 * 15 14 13 44 44 H 1.09001 * 109.88572 * 62.53043 * 15 14 13 45 45 H 1.08993 * 110.98545 * 89.17379 * 20 18 12 46 46 H 1.08992 * 110.98785 * 325.36299 * 20 18 12 47 47 H 1.09001 * 109.96038 * 263.21605 * 21 20 18 48 48 H 1.09004 * 109.98691 * 142.00009 * 21 20 18 49 49 H 0.97002 * 120.00329 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3489 1.5248 -0.0005 5 7 4.1507 0.4732 -0.0005 6 6 5.4634 0.6004 -0.0005 7 6 6.0625 1.8475 -0.0011 8 6 5.2712 2.9823 -0.0062 9 6 3.8805 2.8229 -0.0002 10 6 2.9899 3.9991 0.0003 11 8 2.0381 4.0405 0.7557 12 7 3.2314 5.0275 -0.8365 13 6 4.3023 4.9808 -1.8548 14 6 3.7587 5.3269 -3.2393 15 6 2.9046 6.6063 -3.2067 16 6 1.7979 6.3836 -2.2026 17 1 1.3053 5.4378 -2.4285 18 6 2.4540 6.2595 -0.7983 19 1 3.0801 7.1232 -0.5743 20 6 1.1963 6.2448 0.0803 21 6 0.3056 7.3042 -0.6278 22 7 0.7841 7.4059 -2.0286 23 6 0.3517 8.2953 -2.9758 24 1 0.8539 8.3546 -3.9301 25 6 -0.7322 9.1207 -2.7093 26 7 -1.4343 8.9505 -1.6092 27 14 -1.1942 10.4731 -3.9123 28 1 -2.2495 9.9780 -4.8324 29 1 -1.7033 11.6496 -3.1626 30 1 0.0027 10.8668 -4.6980 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 6.0819 -0.2850 -0.0009 37 1 7.1390 1.9344 -0.0015 38 1 5.7154 3.9666 -0.0104 39 1 5.0815 5.6947 -1.5876 40 1 4.7292 3.9781 -1.8793 41 1 3.1470 4.4994 -3.5988 42 1 4.5944 5.4739 -3.9235 43 1 2.4786 6.7929 -4.1925 44 1 3.5179 7.4538 -2.9005 45 1 1.4292 6.5496 1.1005 46 1 0.7218 5.2636 0.0664 47 1 0.4062 8.2682 -0.1292 48 1 -0.7365 6.9848 -0.6129 49 1 -2.1919 9.5270 -1.4231 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049878105.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:48 Heat of formation + Delta-G solvation = 10.015153 kcal Electronic energy + Delta-G solvation = -31792.951867 eV Core-core repulsion = 27721.850855 eV Total energy + Delta-G solvation = -4071.101012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.16284 -39.90784 -38.19463 -37.54927 -35.43530 -33.07812 -32.58652 -32.19332 -31.87158 -30.23953 -28.80271 -28.19340 -25.45506 -24.46517 -24.38232 -23.46007 -22.43084 -21.45837 -20.98491 -19.74687 -19.26183 -18.56173 -17.14501 -16.92215 -16.44545 -16.34224 -15.59761 -15.37956 -14.99945 -14.64240 -14.50372 -14.19773 -14.04710 -13.99550 -13.81097 -13.51668 -13.24125 -12.90719 -12.73262 -12.50685 -12.49591 -12.41830 -12.17806 -11.81654 -11.62383 -11.55031 -11.09823 -10.90320 -10.86141 -10.70212 -10.58466 -10.46480 -10.11530 -10.03775 -10.02767 -9.90191 -9.80569 -9.55532 -8.99799 -8.69365 -8.51293 -8.18005 -6.76228 -5.66845 -3.00990 0.60172 0.99974 2.78531 2.91896 3.12917 3.42433 3.47475 3.49720 3.57575 3.99426 4.48708 4.51557 4.53672 4.71984 4.84367 4.86926 4.90438 4.99481 5.10938 5.12211 5.23970 5.31543 5.39979 5.44856 5.54429 5.60615 5.62233 5.65610 5.75565 5.78184 5.80137 5.90532 5.99349 6.02217 6.10217 6.13773 6.28864 6.32791 6.43469 6.59544 6.75341 6.81951 6.96005 7.09752 7.24882 7.51935 7.58138 7.71050 7.75800 7.87775 8.29154 8.45510 9.22562 9.87398 10.56702 11.45614 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015648 B = 0.003214 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.905893 B = 8708.685775 C = 9632.127954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.066 3.934 3 O -0.282 6.282 4 C 0.368 3.632 5 N -0.544 5.544 6 C 0.157 3.843 7 C -0.221 4.221 8 C -0.012 4.012 9 C -0.197 4.197 10 C 0.570 3.430 11 O -0.510 6.510 12 N -0.594 5.594 13 C 0.107 3.893 14 C -0.129 4.129 15 C -0.115 4.115 16 C 0.159 3.841 17 H 0.018 0.982 18 C 0.116 3.884 19 H 0.081 0.919 20 C -0.133 4.133 21 C 0.172 3.828 22 N -0.591 5.591 23 C -0.227 4.227 24 H 0.078 0.922 25 C -0.007 4.007 26 N -0.916 5.916 27 Si 0.908 3.092 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.162 0.838 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.089 0.911 47 H 0.037 0.963 48 H 0.054 0.946 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.775 -17.336 2.215 24.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.009 4.009 3 O -0.187 6.187 4 C 0.188 3.812 5 N -0.269 5.269 6 C 0.000 4.000 7 C -0.241 4.241 8 C -0.038 4.038 9 C -0.203 4.203 10 C 0.357 3.643 11 O -0.385 6.385 12 N -0.327 5.327 13 C -0.016 4.016 14 C -0.168 4.168 15 C -0.154 4.154 16 C 0.049 3.951 17 H 0.035 0.965 18 C 0.012 3.988 19 H 0.098 0.902 20 C -0.172 4.172 21 C 0.047 3.953 22 N -0.316 5.316 23 C -0.356 4.356 24 H 0.095 0.905 25 C -0.203 4.203 26 N -0.563 5.563 27 Si 0.739 3.261 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.179 0.821 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.108 0.892 47 H 0.056 0.944 48 H 0.072 0.928 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 15.407 -17.787 2.619 23.677 hybrid contribution 0.305 1.324 -0.697 1.527 sum 15.712 -16.463 1.922 22.839 Atomic orbital electron populations 1.21819 0.92691 1.02649 1.04030 1.22672 0.95260 0.80803 1.02194 1.86418 1.15858 1.30543 1.85893 1.19738 0.84564 0.88371 0.88513 1.67457 1.06624 1.32412 1.20373 1.22597 0.89157 0.97578 0.90689 1.21902 1.01572 0.92931 1.07706 1.21672 0.90944 1.00178 0.90986 1.20085 0.94610 0.92790 1.12821 1.17713 0.84261 0.81511 0.80822 1.90806 1.28223 1.79104 1.40368 1.47846 1.35208 1.15809 1.33883 1.21857 0.89546 1.01755 0.88403 1.21899 1.00092 0.99212 0.95591 1.21418 0.96979 0.96073 1.00883 1.20734 0.89502 0.92935 0.91883 0.96511 1.22407 0.92589 0.83971 0.99797 0.90154 1.23035 0.94727 1.02095 0.97293 1.21711 0.96000 0.94760 0.82794 1.44047 1.41394 1.36928 1.09216 1.18972 1.10061 1.11582 0.94950 0.90450 1.24809 0.97388 1.00299 0.97848 1.69963 1.20340 1.40197 1.25831 0.86162 0.78172 0.81753 0.80030 1.21714 1.21695 1.20681 0.91396 0.90374 0.91261 0.91674 0.91604 0.82057 0.83968 0.83600 0.91463 0.90389 0.91880 0.90903 0.91428 0.91786 0.92286 0.89224 0.94444 0.92751 0.93767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.28 37.16 0.38 -1.22 16 2 C 0.07 0.77 6.03 37.16 0.22 0.99 16 3 O -0.28 -4.39 9.08 -29.76 -0.27 -4.66 16 4 C 0.37 5.25 7.48 -16.61 -0.12 5.12 16 5 N -0.54 -6.46 9.21 -12.98 -0.12 -6.58 16 6 C 0.16 1.32 11.17 -17.49 -0.20 1.13 16 7 C -0.22 -1.66 10.09 -39.50 -0.40 -2.05 16 8 C -0.01 -0.12 7.67 -38.89 -0.30 -0.42 16 9 C -0.20 -2.73 5.01 -104.69 -0.52 -3.25 16 10 C 0.57 9.80 7.05 -12.47 -0.09 9.71 16 11 O -0.51 -10.60 13.14 -6.50 -0.09 -10.69 16 12 N -0.59 -9.58 2.91 -165.21 -0.48 -10.06 16 13 C 0.11 1.29 5.17 -3.45 -0.02 1.27 16 14 C -0.13 -1.68 5.92 -26.42 -0.16 -1.83 16 15 C -0.11 -1.98 5.42 -27.24 -0.15 -2.13 16 16 C 0.16 3.38 2.58 -68.36 -0.18 3.21 16 17 H 0.02 0.41 8.04 -51.93 -0.42 -0.01 16 18 C 0.12 2.24 3.33 -66.80 -0.22 2.02 16 19 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 20 C -0.13 -2.90 5.11 -25.20 -0.13 -3.03 16 21 C 0.17 4.42 5.46 -1.70 -0.01 4.41 16 22 N -0.59 -15.38 3.35 -163.28 -0.55 -15.93 16 23 C -0.23 -6.34 9.95 -15.06 -0.15 -6.49 16 24 H 0.08 2.06 7.28 -52.48 -0.38 1.68 16 25 C -0.01 -0.19 5.45 -17.43 -0.10 -0.29 16 26 N -0.92 -27.51 10.66 55.49 0.59 -26.92 16 27 Si 0.91 22.25 29.56 -169.99 -5.02 17.23 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 30 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.70 8.10 -51.93 -0.42 0.27 16 35 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.16 0.78 8.06 -52.48 -0.42 0.36 16 37 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 38 H 0.15 1.14 7.19 -52.49 -0.38 0.77 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.80 5.21 -51.93 -0.27 0.53 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 1.22 7.72 -51.93 -0.40 0.82 16 44 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.09 2.10 6.03 -51.93 -0.31 1.79 16 47 H 0.04 1.03 7.81 -51.93 -0.41 0.62 16 48 H 0.05 1.56 7.32 -51.93 -0.38 1.18 16 49 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 382.89 15.07 5.77 5.77 Total: -1.00 -34.66 382.89 -9.87 -44.52 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -7.57 Total: 0.16 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -2.13 Total: 7.15 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: -0.56 Total: -59.48 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.36 Total: -15.35 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.66 -9.87 -44.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049878105.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.539 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds