Wall clock time and date at job start Wed Apr 1 2020 05:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42903 * 109.46803 * 2 1 4 4 C 1.35430 * 116.99753 * 180.02562 * 3 2 1 5 5 N 1.32241 * 119.79807 * 359.97438 * 4 3 2 6 6 C 1.31883 * 121.79537 * 180.02562 * 5 4 3 7 7 C 1.38355 * 121.18978 * 359.97438 * 6 5 4 8 8 C 1.38343 * 119.45492 * 359.78555 * 7 6 5 9 9 C 1.39981 * 118.34907 * 0.48333 * 8 7 6 10 10 C 1.47529 * 120.59731 * 179.75283 * 9 8 7 11 11 O 1.21588 * 119.99630 * 225.54986 * 10 9 8 12 12 N 1.34772 * 119.99848 * 45.54630 * 10 9 8 13 13 C 1.47844 * 122.22989 * 5.38836 * 12 10 9 14 14 C 1.52722 * 111.06131 * 127.48571 * 13 12 10 15 15 C 1.53869 * 111.51768 * 48.54030 * 14 13 12 16 16 C 1.51081 * 107.34584 * 303.06885 * 15 14 13 17 17 H 1.09005 * 108.73128 * 309.15750 * 16 15 14 18 18 C 1.45729 * 122.22449 * 185.36308 * 12 10 9 19 19 H 1.08997 * 111.64183 * 119.17302 * 18 12 10 20 20 C 1.53431 * 116.37252 * 350.12541 * 18 12 10 21 21 C 1.55470 * 101.66779 * 207.26854 * 20 18 12 22 22 N 1.45021 * 119.20176 * 183.89179 * 16 15 14 23 23 C 1.36936 * 126.55838 * 28.74972 * 22 16 15 24 24 H 1.08003 * 120.00126 * 352.81174 * 23 22 16 25 25 C 1.38818 * 120.00065 * 172.81006 * 23 22 16 26 26 N 1.31616 * 119.99952 * 352.59577 * 25 23 22 27 27 Si 1.86800 * 119.99879 * 172.59659 * 25 23 22 28 28 H 1.48508 * 109.47179 * 94.98954 * 27 25 23 29 29 H 1.48502 * 109.46744 * 214.98178 * 27 25 23 30 30 H 1.48489 * 109.47340 * 334.98651 * 27 25 23 31 31 H 1.09001 * 109.47431 * 59.99990 * 1 2 3 32 32 H 1.09001 * 109.46976 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47353 * 299.99759 * 1 2 3 34 34 H 1.09001 * 109.47353 * 240.00241 * 2 1 3 35 35 H 1.08997 * 109.47114 * 120.00390 * 2 1 3 36 36 H 1.08004 * 119.40620 * 180.02562 * 6 5 4 37 37 H 1.08000 * 120.27337 * 180.02562 * 7 6 5 38 38 H 1.07994 * 120.82388 * 180.23006 * 8 7 6 39 39 H 1.09004 * 109.16630 * 247.89642 * 13 12 10 40 40 H 1.09005 * 109.16285 * 7.13452 * 13 12 10 41 41 H 1.08994 * 109.06932 * 288.01693 * 14 13 12 42 42 H 1.09000 * 109.06800 * 169.06235 * 14 13 12 43 43 H 1.09001 * 109.87889 * 183.61262 * 15 14 13 44 44 H 1.09001 * 109.88572 * 62.53043 * 15 14 13 45 45 H 1.08993 * 110.98545 * 89.17379 * 20 18 12 46 46 H 1.08992 * 110.98785 * 325.36299 * 20 18 12 47 47 H 1.09001 * 109.96038 * 263.21605 * 21 20 18 48 48 H 1.09004 * 109.98691 * 142.00009 * 21 20 18 49 49 H 0.97002 * 120.00329 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3489 1.5248 -0.0005 5 7 4.1507 0.4732 -0.0005 6 6 5.4634 0.6004 -0.0005 7 6 6.0625 1.8475 -0.0011 8 6 5.2712 2.9823 -0.0062 9 6 3.8805 2.8229 -0.0002 10 6 2.9899 3.9991 0.0003 11 8 2.0381 4.0405 0.7557 12 7 3.2314 5.0275 -0.8365 13 6 4.3023 4.9808 -1.8548 14 6 3.7587 5.3269 -3.2393 15 6 2.9046 6.6063 -3.2067 16 6 1.7979 6.3836 -2.2026 17 1 1.3053 5.4378 -2.4285 18 6 2.4540 6.2595 -0.7983 19 1 3.0801 7.1232 -0.5743 20 6 1.1963 6.2448 0.0803 21 6 0.3056 7.3042 -0.6278 22 7 0.7841 7.4059 -2.0286 23 6 0.3517 8.2953 -2.9758 24 1 0.8539 8.3546 -3.9301 25 6 -0.7322 9.1207 -2.7093 26 7 -1.4343 8.9505 -1.6092 27 14 -1.1942 10.4731 -3.9123 28 1 -2.2495 9.9780 -4.8324 29 1 -1.7033 11.6496 -3.1626 30 1 0.0027 10.8668 -4.6980 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 6.0819 -0.2850 -0.0009 37 1 7.1390 1.9344 -0.0015 38 1 5.7154 3.9666 -0.0104 39 1 5.0815 5.6947 -1.5876 40 1 4.7292 3.9781 -1.8793 41 1 3.1470 4.4994 -3.5988 42 1 4.5944 5.4739 -3.9235 43 1 2.4786 6.7929 -4.1925 44 1 3.5179 7.4538 -2.9005 45 1 1.4292 6.5496 1.1005 46 1 0.7218 5.2636 0.0664 47 1 0.4062 8.2682 -0.1292 48 1 -0.7365 6.9848 -0.6129 49 1 -2.1919 9.5270 -1.4231 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049878105.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:46 Heat of formation + Delta-G solvation = -13.874466 kcal Electronic energy + Delta-G solvation = -31793.987799 eV Core-core repulsion = 27721.850855 eV Total energy + Delta-G solvation = -4072.136943 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.18916 -41.17516 -39.19753 -38.95394 -36.96761 -34.46689 -34.05676 -33.33126 -33.03508 -31.26449 -30.53861 -29.71569 -26.73391 -26.32777 -25.31787 -24.56544 -23.31404 -22.83880 -22.53771 -21.51464 -20.56311 -19.46065 -18.67390 -17.94925 -17.73321 -17.41531 -17.12930 -16.67831 -16.35618 -16.02888 -15.86721 -15.52863 -15.45931 -15.03804 -14.89864 -14.73380 -14.47606 -14.28144 -14.06421 -13.88381 -13.53804 -13.40768 -13.38410 -13.24384 -13.16814 -12.86482 -12.74315 -12.52556 -12.32775 -12.12699 -12.02338 -11.80540 -11.78160 -11.72821 -11.56283 -11.44335 -10.98213 -10.85826 -10.75841 -10.27578 -9.62679 -9.47697 -8.91044 -7.85478 -5.23149 -0.20999 0.25271 1.45213 1.47627 1.57144 1.65283 1.93970 2.00929 2.50187 2.74177 3.16989 3.32888 3.36535 3.57415 3.84275 3.89815 3.97538 3.98417 4.01296 4.01545 4.07162 4.11736 4.23083 4.26189 4.32077 4.36280 4.53092 4.54006 4.57155 4.63528 4.74956 4.76539 4.85885 4.88395 4.94232 5.00775 5.08521 5.10699 5.13569 5.14213 5.27452 5.41781 5.46335 5.48104 5.55841 5.64098 5.70746 6.16672 6.22703 6.45493 6.77273 7.03280 7.17504 7.74175 8.45444 9.27000 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015648 B = 0.003214 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.905893 B = 8708.685775 C = 9632.127954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 O -0.320 6.320 4 C 0.342 3.658 5 N -0.557 5.557 6 C 0.157 3.843 7 C -0.197 4.197 8 C -0.007 4.007 9 C -0.224 4.224 10 C 0.565 3.435 11 O -0.562 6.562 12 N -0.594 5.594 13 C 0.102 3.898 14 C -0.121 4.121 15 C -0.109 4.109 16 C 0.153 3.847 17 H -0.015 1.015 18 C 0.134 3.866 19 H 0.093 0.907 20 C -0.117 4.117 21 C 0.183 3.817 22 N -0.610 5.610 23 C -0.235 4.235 24 H 0.090 0.910 25 C -0.070 4.070 26 N -0.954 5.954 27 Si 0.981 3.019 28 H -0.289 1.289 29 H -0.295 1.295 30 H -0.261 1.261 31 H 0.052 0.948 32 H 0.109 0.891 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.203 0.797 37 H 0.190 0.810 38 H 0.171 0.829 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.049 0.951 42 H 0.117 0.883 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.012 0.988 48 H 0.010 0.990 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.949 -18.505 0.772 28.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 O -0.227 6.227 4 C 0.163 3.837 5 N -0.281 5.281 6 C 0.001 3.999 7 C -0.216 4.216 8 C -0.032 4.032 9 C -0.230 4.230 10 C 0.354 3.646 11 O -0.442 6.442 12 N -0.326 5.326 13 C -0.018 4.018 14 C -0.159 4.159 15 C -0.148 4.148 16 C 0.045 3.955 17 H 0.002 0.998 18 C 0.028 3.972 19 H 0.111 0.889 20 C -0.155 4.155 21 C 0.058 3.942 22 N -0.334 5.334 23 C -0.364 4.364 24 H 0.108 0.892 25 C -0.263 4.263 26 N -0.603 5.603 27 Si 0.808 3.192 28 H -0.217 1.217 29 H -0.222 1.222 30 H -0.185 1.185 31 H 0.071 0.929 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.219 0.781 37 H 0.207 0.793 38 H 0.188 0.812 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.068 0.932 42 H 0.135 0.865 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.031 0.969 48 H 0.028 0.972 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 20.654 -18.989 1.134 28.079 hybrid contribution -1.228 1.541 -0.241 1.985 sum 19.425 -17.448 0.892 26.126 Atomic orbital electron populations 1.21847 0.92337 1.04189 1.02484 1.22796 0.95574 0.79862 1.02730 1.86377 1.17513 1.32329 1.86495 1.19945 0.84360 0.89260 0.90116 1.67516 1.08177 1.31571 1.20884 1.23455 0.88181 0.99879 0.88407 1.22396 1.03526 0.91343 1.04381 1.22016 0.88986 1.02368 0.89837 1.19922 0.95885 0.90893 1.16342 1.18332 0.84044 0.82274 0.79918 1.90768 1.30690 1.80161 1.42544 1.47920 1.35563 1.14342 1.34791 1.22237 0.88729 1.04464 0.86420 1.21892 1.00549 0.96118 0.97347 1.21395 0.95910 0.98970 0.98509 1.20907 0.89651 0.90005 0.94917 0.99770 1.22028 0.91927 0.86222 0.96981 0.88899 1.22743 0.95699 0.99364 0.97742 1.21400 0.94691 0.94395 0.83744 1.44324 1.42713 1.37509 1.08870 1.19433 1.09890 1.11398 0.95669 0.89219 1.25754 0.97663 1.03007 0.99867 1.70204 1.20866 1.41198 1.28033 0.85034 0.78215 0.78224 0.77690 1.21669 1.22211 1.18539 0.92884 0.87238 0.92772 0.90876 0.91070 0.78053 0.79324 0.81164 0.87892 0.87762 0.93238 0.86491 0.92644 0.90729 0.91639 0.91283 0.96944 0.97172 0.94472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 10.28 71.98 0.74 -2.60 16 2 C 0.06 1.57 6.03 71.98 0.43 2.01 16 3 O -0.32 -10.54 9.08 -75.99 -0.69 -11.23 16 4 C 0.34 9.65 7.48 85.13 0.64 10.29 16 5 N -0.56 -12.06 9.21 -307.99 -2.84 -14.89 16 6 C 0.16 1.93 11.17 84.71 0.95 2.87 16 7 C -0.20 -1.80 10.09 22.32 0.23 -1.58 16 8 C -0.01 -0.10 7.67 22.72 0.17 0.07 16 9 C -0.22 -5.93 5.01 -19.91 -0.10 -6.03 16 10 C 0.57 19.65 7.05 86.69 0.61 20.26 16 11 O -0.56 -24.89 13.14 7.27 0.10 -24.80 16 12 N -0.59 -18.60 2.91 -794.87 -2.31 -20.92 16 13 C 0.10 2.06 5.17 86.03 0.44 2.51 16 14 C -0.12 -2.74 5.92 30.79 0.18 -2.55 16 15 C -0.11 -3.60 5.42 30.26 0.16 -3.44 16 16 C 0.15 6.71 2.58 45.50 0.12 6.82 16 17 H -0.02 -0.75 8.04 -2.38 -0.02 -0.77 16 18 C 0.13 5.21 3.33 46.14 0.15 5.36 16 19 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 20 C -0.12 -5.46 5.11 31.59 0.16 -5.30 16 21 C 0.18 10.16 5.46 86.87 0.47 10.63 16 22 N -0.61 -33.20 3.35 -670.51 -2.25 -35.44 16 23 C -0.24 -13.47 9.95 84.04 0.84 -12.63 16 24 H 0.09 4.80 7.28 -2.91 -0.02 4.77 16 25 C -0.07 -4.13 5.45 84.86 0.46 -3.67 16 26 N -0.95 -60.48 10.66 21.65 0.23 -60.25 16 27 Si 0.98 46.77 29.56 68.60 2.03 48.80 16 28 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 29 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 30 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 35 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 36 H 0.20 0.76 8.06 -2.91 -0.02 0.73 16 37 H 0.19 0.06 8.06 -2.91 -0.02 0.04 16 38 H 0.17 1.71 7.19 -2.91 -0.02 1.69 16 39 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.10 1.64 5.21 -2.38 -0.01 1.62 16 41 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.05 1.95 7.72 -2.39 -0.02 1.93 16 44 H 0.07 2.31 8.12 -2.39 -0.02 2.29 16 45 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 46 H 0.07 3.54 6.03 -2.39 -0.01 3.52 16 47 H 0.01 0.73 7.81 -2.39 -0.02 0.71 16 48 H 0.01 0.63 7.32 -2.39 -0.02 0.62 16 49 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -85.33 382.89 1.88 -83.45 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.95 Total: 12.26 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: 6.66 Total: 23.03 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -7.16 Total: -131.50 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -0.59 Total: -36.03 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -85.33 1.88 -83.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049878105.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.574 kcal (2) G-P(sol) polarization free energy of solvation -85.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds