Wall clock time and date at job start Wed Apr 1 2020 05:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.46815 * 2 1 4 4 C 1.35652 * 117.00073 * 179.97438 * 3 2 1 5 5 C 1.39345 * 120.53692 * 359.72346 * 4 3 2 6 6 C 1.38305 * 118.43485 * 179.75286 * 5 4 3 7 7 C 1.38765 * 119.44837 * 0.56561 * 6 5 4 8 8 N 1.31375 * 121.06409 * 359.67463 * 7 6 5 9 9 C 1.32863 * 121.69559 * 0.02562 * 8 7 6 10 10 C 1.47833 * 119.77984 * 179.97438 * 9 8 7 11 11 O 1.21553 * 119.99940 * 187.95224 * 10 9 8 12 12 N 1.34774 * 120.00154 * 7.96503 * 10 9 8 13 13 C 1.46798 * 119.57929 * 8.06993 * 12 10 9 14 14 C 1.54488 * 106.67032 * 126.54437 * 13 12 10 15 15 C 1.52745 * 107.46182 * 60.01502 * 14 13 12 16 16 C 1.53007 * 110.79736 * 294.83292 * 15 14 13 17 17 H 1.09008 * 111.38466 * 291.24117 * 16 15 14 18 18 C 1.45125 * 119.57783 * 188.35150 * 12 10 9 19 19 H 1.09001 * 109.96549 * 348.03361 * 18 12 10 20 20 C 1.54421 * 111.61170 * 111.31676 * 18 12 10 21 21 C 1.54559 * 102.44712 * 156.58027 * 20 18 12 22 22 N 1.47122 * 107.25783 * 338.33042 * 21 20 18 23 23 C 1.36933 * 125.77125 * 177.43962 * 22 21 20 24 24 H 1.08000 * 120.00194 * 179.97438 * 23 22 21 25 25 C 1.38816 * 119.99784 * 359.95810 * 23 22 21 26 26 N 1.31619 * 119.99734 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99917 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.46992 * 0.02562 * 27 25 23 29 29 H 1.48508 * 109.46864 * 120.00226 * 27 25 23 30 30 H 1.48499 * 109.47330 * 239.99902 * 27 25 23 31 31 H 1.08999 * 109.47613 * 300.00114 * 1 2 3 32 32 H 1.09002 * 109.47449 * 60.00062 * 1 2 3 33 33 H 1.09001 * 109.46923 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47295 * 240.00328 * 2 1 3 35 35 H 1.08996 * 109.47148 * 119.99285 * 2 1 3 36 36 H 1.08001 * 120.78162 * 359.97438 * 5 4 3 37 37 H 1.08002 * 120.27478 * 180.23418 * 6 5 4 38 38 H 1.07990 * 119.47122 * 179.69405 * 7 6 5 39 39 H 1.09001 * 109.83661 * 247.50371 * 13 12 10 40 40 H 1.09000 * 109.83082 * 8.45359 * 13 12 10 41 41 H 1.08992 * 111.28241 * 299.96560 * 14 13 12 42 42 H 1.09001 * 109.13655 * 178.83769 * 14 13 12 43 43 H 1.08998 * 109.20673 * 174.48901 * 15 14 13 44 44 H 1.08998 * 109.21375 * 55.16905 * 15 14 13 45 45 H 1.09001 * 110.80858 * 274.81643 * 20 18 12 46 46 H 1.08999 * 110.81061 * 38.33325 * 20 18 12 47 47 H 1.09011 * 109.88145 * 218.92066 * 21 20 18 48 48 H 1.09000 * 109.88788 * 97.74552 * 21 20 18 49 49 H 0.97002 * 119.99647 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3511 1.5251 0.0005 5 6 4.2103 0.4281 0.0069 6 6 5.5738 0.6596 0.0019 7 6 6.0442 1.9651 0.0028 8 7 5.2153 2.9843 0.0019 9 6 3.8978 2.8126 0.0006 10 6 3.0039 3.9901 0.0002 11 8 1.8059 3.8437 0.1447 12 7 3.5172 5.2258 -0.1606 13 6 4.9342 5.3819 -0.5112 14 6 4.9830 6.2719 -1.7730 15 6 4.3375 7.6094 -1.4159 16 6 2.8516 7.4281 -1.0992 17 1 2.2847 7.1614 -1.9913 18 6 2.6636 6.3853 0.0212 19 1 1.6199 6.0750 0.0704 20 6 3.0550 7.1878 1.2811 21 6 2.5028 8.5961 0.9639 22 7 2.3566 8.6887 -0.4972 23 6 1.8497 9.7590 -1.1846 24 1 1.7851 9.7272 -2.2622 25 6 1.4186 10.8849 -0.4964 26 7 1.4976 10.9237 0.8168 27 14 0.7278 12.3453 -1.4342 28 1 0.7473 12.0527 -2.8900 29 1 -0.6696 12.5969 -0.9990 30 1 1.5559 13.5469 -1.1592 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 3.8206 -0.5791 0.0118 37 1 6.2667 -0.1689 0.0028 38 1 7.1088 2.1462 0.0040 39 1 5.4728 5.8375 0.3197 40 1 5.3668 4.4090 -0.7443 41 1 4.4426 5.8138 -2.6014 42 1 6.0230 6.4314 -2.0577 43 1 4.4442 8.2949 -2.2565 44 1 4.8410 8.0295 -0.5452 45 1 2.5751 6.7744 2.1681 46 1 4.1379 7.2146 1.4022 47 1 3.2009 9.3559 1.3155 48 1 1.5330 8.7306 1.4428 49 1 1.1967 11.7106 1.2977 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049932476.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:03 Heat of formation + Delta-G solvation = 21.513701 kcal Electronic energy + Delta-G solvation = -31520.496026 eV Core-core repulsion = 27449.893628 eV Total energy + Delta-G solvation = -4070.602397 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.28325 -39.75507 -38.55844 -37.63141 -35.07805 -32.90976 -32.37673 -32.16049 -31.86715 -30.24494 -28.85198 -27.99648 -25.56908 -24.70146 -24.09427 -23.56991 -22.44334 -21.80228 -20.74057 -19.90095 -18.61252 -18.16693 -17.47012 -16.88459 -16.76975 -16.52001 -15.78085 -15.23744 -15.09215 -14.70604 -14.65395 -14.16536 -14.07123 -13.92541 -13.61526 -13.25404 -13.19267 -12.92721 -12.82201 -12.67959 -12.58487 -12.24617 -11.92821 -11.83299 -11.56597 -11.29149 -11.19857 -10.95569 -10.85346 -10.73037 -10.60397 -10.44843 -10.15057 -9.98971 -9.95802 -9.76450 -9.54872 -9.46914 -8.85672 -8.72221 -8.53750 -8.01452 -6.76688 -5.63281 -2.96749 0.44446 0.90261 2.78417 2.82409 3.25291 3.45264 3.50691 3.53114 3.70218 4.04886 4.24079 4.36985 4.56083 4.59248 4.60708 4.72852 4.82825 4.89150 5.03794 5.28598 5.33918 5.47358 5.50852 5.54394 5.54693 5.58248 5.61731 5.71137 5.78085 5.80512 5.85960 5.95443 6.02005 6.22644 6.32007 6.34141 6.44068 6.51180 6.57615 6.65580 6.76863 6.91201 6.96736 7.16936 7.22965 7.46361 7.64262 7.70800 7.82998 7.91568 8.31753 8.51362 9.28891 9.88638 10.55630 11.48086 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017103 B = 0.002930 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.744653 B = 9554.236899 C =10538.642633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.269 6.269 4 C 0.140 3.860 5 C -0.176 4.176 6 C -0.110 4.110 7 C 0.048 3.952 8 N -0.407 5.407 9 C 0.052 3.948 10 C 0.562 3.438 11 O -0.520 6.520 12 N -0.573 5.573 13 C 0.074 3.926 14 C -0.134 4.134 15 C -0.130 4.130 16 C 0.158 3.842 17 H 0.057 0.943 18 C 0.129 3.871 19 H 0.101 0.899 20 C -0.151 4.151 21 C 0.182 3.818 22 N -0.598 5.598 23 C -0.222 4.222 24 H 0.078 0.922 25 C -0.009 4.009 26 N -0.921 5.921 27 Si 0.911 3.089 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.292 1.292 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.166 0.834 39 H 0.065 0.935 40 H 0.141 0.859 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.040 0.960 48 H 0.051 0.949 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.479 -26.015 -1.266 27.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.179 6.179 4 C 0.089 3.911 5 C -0.203 4.203 6 C -0.130 4.130 7 C -0.111 4.111 8 N -0.119 5.119 9 C -0.087 4.087 10 C 0.348 3.652 11 O -0.395 6.395 12 N -0.304 5.304 13 C -0.048 4.048 14 C -0.173 4.173 15 C -0.170 4.170 16 C 0.049 3.951 17 H 0.075 0.925 18 C 0.025 3.975 19 H 0.119 0.881 20 C -0.190 4.190 21 C 0.057 3.943 22 N -0.323 5.323 23 C -0.351 4.351 24 H 0.096 0.904 25 C -0.205 4.205 26 N -0.569 5.569 27 Si 0.742 3.258 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.219 1.219 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.183 0.817 39 H 0.083 0.917 40 H 0.157 0.843 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.059 0.941 48 H 0.069 0.931 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.805 -24.832 -1.126 26.371 hybrid contribution -0.339 -0.170 -0.391 0.545 sum 8.466 -25.002 -1.517 26.440 Atomic orbital electron populations 1.21743 0.92134 1.02576 1.04360 1.22945 0.96846 0.81990 1.01074 1.86457 1.16758 1.28611 1.86121 1.19974 0.84355 0.93610 0.93197 1.21758 0.94192 0.98693 1.05614 1.22159 0.95203 0.98856 0.96762 1.22914 1.00291 0.88144 0.99735 1.67820 1.01950 1.32953 1.09168 1.20896 0.90248 0.91456 1.06071 1.17682 0.86814 0.82398 0.78286 1.90820 1.14052 1.84973 1.49698 1.47451 1.11432 1.04697 1.66812 1.23307 0.80910 1.04369 0.96200 1.22147 1.00273 0.97372 0.97475 1.22103 0.97970 0.95473 1.01477 1.21313 0.92784 0.86845 0.94149 0.92507 1.21805 0.94982 0.84180 0.96527 0.88150 1.23115 1.00432 0.98843 0.96626 1.21161 0.99369 0.89436 0.84364 1.44712 1.72995 1.12673 1.01912 1.19088 1.33453 0.91883 0.90627 0.90437 1.24790 1.01717 0.98279 0.95737 1.69977 1.52848 1.28924 1.05173 0.86054 0.78392 0.82661 0.78725 1.20562 1.21836 1.21872 0.91077 0.91158 0.90452 0.92011 0.91979 0.83782 0.84083 0.81695 0.91668 0.84254 0.92141 0.91851 0.92601 0.92026 0.92200 0.92169 0.94137 0.93097 0.93885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.16 0.38 -0.81 16 2 C 0.05 0.39 5.48 37.16 0.20 0.60 16 3 O -0.27 -3.61 8.23 -40.46 -0.33 -3.95 16 4 C 0.14 1.74 6.70 -38.56 -0.26 1.48 16 5 C -0.18 -1.46 9.13 -39.15 -0.36 -1.81 16 6 C -0.11 -0.74 10.10 -39.36 -0.40 -1.13 16 7 C 0.05 0.40 11.17 -17.55 -0.20 0.20 16 8 N -0.41 -4.87 6.01 -9.71 -0.06 -4.93 16 9 C 0.05 0.74 6.59 -82.88 -0.55 0.20 16 10 C 0.56 10.17 7.60 -12.34 -0.09 10.08 16 11 O -0.52 -10.95 14.51 -16.48 -0.24 -11.19 16 12 N -0.57 -10.19 2.70 -165.49 -0.45 -10.64 16 13 C 0.07 1.11 5.57 -3.10 -0.02 1.09 16 14 C -0.13 -2.02 6.17 -26.08 -0.16 -2.19 16 15 C -0.13 -2.48 5.12 -26.86 -0.14 -2.61 16 16 C 0.16 3.45 3.54 -66.35 -0.23 3.22 16 17 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 18 C 0.13 2.66 3.13 -67.29 -0.21 2.45 16 19 H 0.10 2.30 6.93 -51.93 -0.36 1.94 16 20 C -0.15 -3.14 6.10 -25.17 -0.15 -3.29 16 21 C 0.18 4.61 5.24 -2.88 -0.02 4.59 16 22 N -0.60 -15.67 2.95 -162.19 -0.48 -16.15 16 23 C -0.22 -6.32 10.29 -15.06 -0.16 -6.47 16 24 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 25 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 26 N -0.92 -27.65 10.33 55.49 0.57 -27.08 16 27 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 30 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.40 7.71 -51.93 -0.40 0.00 16 35 H 0.06 0.40 7.68 -51.93 -0.40 0.01 16 36 H 0.14 0.77 6.46 -52.49 -0.34 0.43 16 37 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 38 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.07 0.97 7.51 -51.93 -0.39 0.58 16 40 H 0.14 1.87 3.97 -90.04 -0.36 1.51 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.06 1.24 7.20 -51.93 -0.37 0.87 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 46 H 0.06 1.17 6.81 -51.93 -0.35 0.82 16 47 H 0.04 1.12 7.60 -51.92 -0.39 0.72 16 48 H 0.05 1.43 7.30 -51.93 -0.38 1.05 16 49 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 379.88 15.07 5.72 5.72 Total: -1.00 -34.59 379.88 -10.25 -44.83 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.52 Total: 0.51 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -2.44 Total: 5.22 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.41 Total: -58.79 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.57 Total: -15.14 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.59 -10.25 -44.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049932476.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.348 kcal (2) G-P(sol) polarization free energy of solvation -34.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds