Wall clock time and date at job start Wed Apr 1 2020 05:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.46815 * 2 1 4 4 C 1.35652 * 117.00073 * 179.97438 * 3 2 1 5 5 C 1.39345 * 120.53692 * 359.72346 * 4 3 2 6 6 C 1.38305 * 118.43485 * 179.75286 * 5 4 3 7 7 C 1.38765 * 119.44837 * 0.56561 * 6 5 4 8 8 N 1.31375 * 121.06409 * 359.67463 * 7 6 5 9 9 C 1.32863 * 121.69559 * 0.02562 * 8 7 6 10 10 C 1.47833 * 119.77984 * 179.97438 * 9 8 7 11 11 O 1.21553 * 119.99940 * 187.95224 * 10 9 8 12 12 N 1.34774 * 120.00154 * 7.96503 * 10 9 8 13 13 C 1.46798 * 119.57929 * 8.06993 * 12 10 9 14 14 C 1.54488 * 106.67032 * 126.54437 * 13 12 10 15 15 C 1.52745 * 107.46182 * 60.01502 * 14 13 12 16 16 C 1.53007 * 110.79736 * 294.83292 * 15 14 13 17 17 H 1.09008 * 111.38466 * 291.24117 * 16 15 14 18 18 C 1.45125 * 119.57783 * 188.35150 * 12 10 9 19 19 H 1.09001 * 109.96549 * 348.03361 * 18 12 10 20 20 C 1.54421 * 111.61170 * 111.31676 * 18 12 10 21 21 C 1.54559 * 102.44712 * 156.58027 * 20 18 12 22 22 N 1.47122 * 107.25783 * 338.33042 * 21 20 18 23 23 C 1.36933 * 125.77125 * 177.43962 * 22 21 20 24 24 H 1.08000 * 120.00194 * 179.97438 * 23 22 21 25 25 C 1.38816 * 119.99784 * 359.95810 * 23 22 21 26 26 N 1.31619 * 119.99734 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99917 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.46992 * 0.02562 * 27 25 23 29 29 H 1.48508 * 109.46864 * 120.00226 * 27 25 23 30 30 H 1.48499 * 109.47330 * 239.99902 * 27 25 23 31 31 H 1.08999 * 109.47613 * 300.00114 * 1 2 3 32 32 H 1.09002 * 109.47449 * 60.00062 * 1 2 3 33 33 H 1.09001 * 109.46923 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47295 * 240.00328 * 2 1 3 35 35 H 1.08996 * 109.47148 * 119.99285 * 2 1 3 36 36 H 1.08001 * 120.78162 * 359.97438 * 5 4 3 37 37 H 1.08002 * 120.27478 * 180.23418 * 6 5 4 38 38 H 1.07990 * 119.47122 * 179.69405 * 7 6 5 39 39 H 1.09001 * 109.83661 * 247.50371 * 13 12 10 40 40 H 1.09000 * 109.83082 * 8.45359 * 13 12 10 41 41 H 1.08992 * 111.28241 * 299.96560 * 14 13 12 42 42 H 1.09001 * 109.13655 * 178.83769 * 14 13 12 43 43 H 1.08998 * 109.20673 * 174.48901 * 15 14 13 44 44 H 1.08998 * 109.21375 * 55.16905 * 15 14 13 45 45 H 1.09001 * 110.80858 * 274.81643 * 20 18 12 46 46 H 1.08999 * 110.81061 * 38.33325 * 20 18 12 47 47 H 1.09011 * 109.88145 * 218.92066 * 21 20 18 48 48 H 1.09000 * 109.88788 * 97.74552 * 21 20 18 49 49 H 0.97002 * 119.99647 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3511 1.5251 0.0005 5 6 4.2103 0.4281 0.0069 6 6 5.5738 0.6596 0.0019 7 6 6.0442 1.9651 0.0028 8 7 5.2153 2.9843 0.0019 9 6 3.8978 2.8126 0.0006 10 6 3.0039 3.9901 0.0002 11 8 1.8059 3.8437 0.1447 12 7 3.5172 5.2258 -0.1606 13 6 4.9342 5.3819 -0.5112 14 6 4.9830 6.2719 -1.7730 15 6 4.3375 7.6094 -1.4159 16 6 2.8516 7.4281 -1.0992 17 1 2.2847 7.1614 -1.9913 18 6 2.6636 6.3853 0.0212 19 1 1.6199 6.0750 0.0704 20 6 3.0550 7.1878 1.2811 21 6 2.5028 8.5961 0.9639 22 7 2.3566 8.6887 -0.4972 23 6 1.8497 9.7590 -1.1846 24 1 1.7851 9.7272 -2.2622 25 6 1.4186 10.8849 -0.4964 26 7 1.4976 10.9237 0.8168 27 14 0.7278 12.3453 -1.4342 28 1 0.7473 12.0527 -2.8900 29 1 -0.6696 12.5969 -0.9990 30 1 1.5559 13.5469 -1.1592 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 3.8206 -0.5791 0.0118 37 1 6.2667 -0.1689 0.0028 38 1 7.1088 2.1462 0.0040 39 1 5.4728 5.8375 0.3197 40 1 5.3668 4.4090 -0.7443 41 1 4.4426 5.8138 -2.6014 42 1 6.0230 6.4314 -2.0577 43 1 4.4442 8.2949 -2.2565 44 1 4.8410 8.0295 -0.5452 45 1 2.5751 6.7744 2.1681 46 1 4.1379 7.2146 1.4022 47 1 3.2009 9.3559 1.3155 48 1 1.5330 8.7306 1.4428 49 1 1.1967 11.7106 1.2977 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049932476.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:02 Heat of formation + Delta-G solvation = 0.385475 kcal Electronic energy + Delta-G solvation = -31521.412214 eV Core-core repulsion = 27449.893628 eV Total energy + Delta-G solvation = -4071.518586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.23929 -41.07933 -39.40500 -39.13307 -36.70732 -34.31288 -33.73154 -33.23087 -33.02141 -31.18460 -30.63868 -29.69172 -26.85818 -26.12587 -25.41463 -24.69090 -23.30829 -23.08365 -22.09878 -21.77484 -19.85478 -19.17631 -18.86730 -18.55063 -17.77824 -17.28258 -17.02943 -16.79885 -16.33837 -16.18711 -15.92240 -15.44702 -15.24517 -15.06535 -14.98178 -14.64457 -14.35953 -14.19426 -14.07008 -13.73722 -13.59750 -13.48961 -13.37870 -13.25881 -13.04025 -12.81677 -12.62869 -12.39811 -12.36185 -12.21797 -12.01900 -11.95439 -11.81953 -11.67751 -11.57529 -11.24127 -11.13069 -10.78713 -10.73830 -9.86980 -9.66351 -9.36884 -8.90632 -7.84817 -5.21236 -0.34702 0.23723 1.44044 1.46010 1.56208 1.75239 1.93166 2.12988 2.49126 2.79797 3.12873 3.32627 3.51619 3.59521 3.73363 3.85432 3.88742 4.02646 4.03086 4.04636 4.15176 4.15807 4.18258 4.27265 4.33603 4.38698 4.44808 4.56868 4.66539 4.75041 4.77063 4.84727 4.89338 4.89802 4.93957 5.05319 5.10229 5.18088 5.20352 5.23841 5.35878 5.39531 5.51981 5.57815 5.62241 5.70828 5.82390 6.16482 6.28308 6.44898 6.75574 7.07537 7.18813 7.73131 8.39988 9.25648 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017103 B = 0.002930 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.744653 B = 9554.236899 C =10538.642633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.039 3.961 3 O -0.311 6.311 4 C 0.125 3.875 5 C -0.169 4.169 6 C -0.083 4.083 7 C 0.053 3.947 8 N -0.425 5.425 9 C 0.008 3.992 10 C 0.555 3.445 11 O -0.567 6.567 12 N -0.577 5.577 13 C 0.075 3.925 14 C -0.123 4.123 15 C -0.118 4.118 16 C 0.153 3.847 17 H 0.044 0.956 18 C 0.143 3.857 19 H 0.067 0.933 20 C -0.132 4.132 21 C 0.195 3.805 22 N -0.618 5.618 23 C -0.236 4.236 24 H 0.081 0.919 25 C -0.067 4.067 26 N -0.952 5.952 27 Si 0.981 3.019 28 H -0.266 1.266 29 H -0.294 1.294 30 H -0.289 1.289 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.178 0.822 37 H 0.191 0.809 38 H 0.205 0.795 39 H 0.068 0.932 40 H 0.167 0.833 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.046 0.954 44 H 0.050 0.950 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.013 0.987 48 H 0.012 0.988 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.927 -29.707 -2.316 32.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.036 4.036 3 O -0.222 6.222 4 C 0.074 3.926 5 C -0.195 4.195 6 C -0.103 4.103 7 C -0.108 4.108 8 N -0.138 5.138 9 C -0.127 4.127 10 C 0.344 3.656 11 O -0.446 6.446 12 N -0.307 5.307 13 C -0.045 4.045 14 C -0.162 4.162 15 C -0.158 4.158 16 C 0.046 3.954 17 H 0.062 0.938 18 C 0.038 3.962 19 H 0.085 0.915 20 C -0.171 4.171 21 C 0.070 3.930 22 N -0.343 5.343 23 C -0.365 4.365 24 H 0.098 0.902 25 C -0.260 4.260 26 N -0.601 5.601 27 Si 0.809 3.191 28 H -0.190 1.190 29 H -0.221 1.221 30 H -0.216 1.216 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.128 0.872 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.195 0.805 37 H 0.208 0.792 38 H 0.221 0.779 39 H 0.087 0.913 40 H 0.182 0.818 41 H 0.078 0.922 42 H 0.117 0.883 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.098 0.902 47 H 0.031 0.969 48 H 0.030 0.970 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.274 -28.556 -2.204 31.160 hybrid contribution -1.349 0.769 -0.060 1.554 sum 10.925 -27.787 -2.264 29.943 Atomic orbital electron populations 1.21797 0.92582 1.04057 1.02453 1.23251 0.96630 0.80488 1.03189 1.86415 1.17898 1.31498 1.86418 1.20201 0.84612 0.94145 0.93621 1.22183 0.94450 0.98786 1.04045 1.22741 0.95123 0.99677 0.92734 1.23670 1.01405 0.88133 0.97577 1.67465 1.01044 1.35006 1.10236 1.20240 0.90899 0.90428 1.11091 1.18398 0.87007 0.83359 0.76807 1.90774 1.16332 1.85808 1.51653 1.47493 1.12174 1.03779 1.67209 1.23611 0.79093 1.05855 0.95988 1.22122 1.01789 0.94598 0.97651 1.21901 0.95481 0.97808 1.00601 1.21484 0.94564 0.85503 0.93836 0.93836 1.21303 0.94167 0.85133 0.95636 0.91512 1.22913 1.01309 0.95914 0.97003 1.20827 0.96779 0.91373 0.84049 1.44962 1.73296 1.13637 1.02389 1.19444 1.33266 0.92745 0.91062 0.90159 1.25664 1.02494 1.01113 0.96692 1.70195 1.53861 1.29375 1.06654 0.84976 0.77116 0.78921 0.78105 1.19043 1.22070 1.21616 0.93069 0.92986 0.87194 0.89627 0.89776 0.80511 0.79173 0.77879 0.91333 0.81777 0.92189 0.88324 0.93489 0.93077 0.91670 0.90187 0.96851 0.97020 0.94396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 10.28 71.98 0.74 -1.64 16 2 C 0.04 0.59 5.48 71.98 0.39 0.98 16 3 O -0.31 -8.40 8.23 -68.82 -0.57 -8.97 16 4 C 0.13 2.94 6.70 22.93 0.15 3.09 16 5 C -0.17 -2.03 9.13 22.55 0.21 -1.83 16 6 C -0.08 -0.60 10.10 22.41 0.23 -0.37 16 7 C 0.05 0.60 11.17 84.89 0.95 1.55 16 8 N -0.43 -8.99 6.01 -184.64 -1.11 -10.10 16 9 C 0.01 0.23 6.59 41.93 0.28 0.51 16 10 C 0.56 20.89 7.60 86.78 0.66 21.55 16 11 O -0.57 -25.69 14.51 16.96 0.25 -25.44 16 12 N -0.58 -20.98 2.70 -795.77 -2.15 -23.13 16 13 C 0.08 2.14 5.57 86.83 0.48 2.62 16 14 C -0.12 -3.52 6.17 31.02 0.19 -3.33 16 15 C -0.12 -4.52 5.12 30.51 0.16 -4.37 16 16 C 0.15 7.04 3.54 45.07 0.16 7.20 16 17 H 0.04 2.08 8.14 -2.38 -0.02 2.06 16 18 C 0.14 6.24 3.13 46.14 0.14 6.39 16 19 H 0.07 3.34 6.93 -2.39 -0.02 3.33 16 20 C -0.13 -5.77 6.10 31.61 0.19 -5.57 16 21 C 0.20 10.57 5.24 86.79 0.45 11.02 16 22 N -0.62 -34.16 2.95 -667.05 -1.97 -36.13 16 23 C -0.24 -13.99 10.29 84.04 0.86 -13.13 16 24 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 25 C -0.07 -3.99 5.49 84.86 0.47 -3.53 16 26 N -0.95 -59.91 10.33 21.65 0.22 -59.69 16 27 Si 0.98 47.96 29.55 68.60 2.03 49.98 16 28 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 29 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 30 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.11 0.93 8.14 -2.39 -0.02 0.92 16 34 H 0.09 0.85 7.71 -2.39 -0.02 0.83 16 35 H 0.08 0.87 7.68 -2.39 -0.02 0.85 16 36 H 0.18 0.89 6.46 -2.91 -0.02 0.87 16 37 H 0.19 -0.40 8.06 -2.91 -0.02 -0.42 16 38 H 0.20 0.65 8.06 -2.92 -0.02 0.63 16 39 H 0.07 1.91 7.51 -2.39 -0.02 1.89 16 40 H 0.17 3.99 3.97 -77.63 -0.31 3.69 16 41 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.05 2.06 7.20 -2.39 -0.02 2.04 16 45 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 46 H 0.08 3.16 6.81 -2.39 -0.02 3.15 16 47 H 0.01 0.78 7.60 -2.38 -0.02 0.76 16 48 H 0.01 0.71 7.30 -2.39 -0.02 0.69 16 49 H 0.25 15.03 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -84.37 379.88 4.08 -80.29 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.66 Total: 12.03 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: 6.72 Total: 21.15 kcal Atomic # 7 Polarization: -124.03 SS G_CDS: -5.01 Total: -129.04 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -0.32 Total: -34.41 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.98 kcal Total: -84.37 4.08 -80.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049932476.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.676 kcal (2) G-P(sol) polarization free energy of solvation -84.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds