Wall clock time and date at job start Wed Apr 1 2020 05:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42899 * 109.47177 * 2 1 4 4 C 1.35494 * 117.00185 * 180.02562 * 3 2 1 5 5 C 1.39169 * 119.52967 * 180.02562 * 4 3 2 6 6 C 1.37951 * 119.26687 * 180.02562 * 5 4 3 7 7 C 1.40278 * 118.35733 * 0.25352 * 6 5 4 8 8 C 1.47615 * 120.49953 * 179.72608 * 7 6 5 9 9 O 1.21576 * 120.00352 * 133.50030 * 8 7 6 10 10 N 1.34782 * 120.00025 * 313.50116 * 8 7 6 11 11 C 1.46795 * 119.51856 * 4.12933 * 10 8 7 12 12 C 1.53429 * 107.32393 * 232.83628 * 11 10 8 13 13 C 1.52730 * 107.91399 * 300.86044 * 12 11 10 14 14 C 1.52966 * 110.88032 * 64.53697 * 13 12 11 15 15 H 1.09005 * 111.91386 * 70.38299 * 14 13 12 16 16 C 1.55023 * 107.59634 * 194.03327 * 14 13 12 17 17 N 1.47102 * 107.12689 * 92.90655 * 16 14 13 18 18 C 1.36933 * 125.64711 * 180.19396 * 17 16 14 19 19 H 1.08008 * 120.00011 * 346.06138 * 18 17 16 20 20 C 1.38810 * 120.00038 * 166.06244 * 18 17 16 21 21 N 1.31619 * 119.99804 * 350.88372 * 20 18 17 22 22 Si 1.86803 * 119.99851 * 170.88184 * 20 18 17 23 23 H 1.48491 * 109.47304 * 94.96318 * 22 20 18 24 24 H 1.48506 * 109.46894 * 214.96517 * 22 20 18 25 25 H 1.48495 * 109.47290 * 334.95709 * 22 20 18 26 26 C 1.47672 * 108.70201 * 0.15329 * 17 16 14 27 27 C 1.45013 * 119.52338 * 184.40807 * 10 8 7 28 28 H 1.08999 * 109.86820 * 12.52891 * 27 10 8 29 29 C 1.39532 * 119.00348 * 359.50018 * 7 6 5 30 30 N 1.31658 * 120.62560 * 0.50998 * 29 7 6 31 31 H 1.09002 * 109.47126 * 299.99375 * 1 2 3 32 32 H 1.08995 * 109.47420 * 59.99720 * 1 2 3 33 33 H 1.09001 * 109.47231 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47126 * 240.00625 * 2 1 3 35 35 H 1.08995 * 109.47420 * 120.00280 * 2 1 3 36 36 H 1.08002 * 120.36422 * 359.97438 * 5 4 3 37 37 H 1.08006 * 120.82242 * 179.97438 * 6 5 4 38 38 H 1.08999 * 109.84776 * 351.51755 * 11 10 8 39 39 H 1.09004 * 109.84370 * 112.50073 * 11 10 8 40 40 H 1.08994 * 109.34305 * 181.61374 * 12 11 10 41 41 H 1.09005 * 110.52603 * 60.79119 * 12 11 10 42 42 H 1.08994 * 109.19500 * 304.18134 * 13 12 11 43 43 H 1.09000 * 109.15617 * 184.87468 * 13 12 11 44 44 H 1.09006 * 109.90275 * 212.27681 * 16 14 13 45 45 H 1.08999 * 109.91087 * 333.34186 * 16 14 13 46 46 H 0.97009 * 119.99598 * 179.97438 * 21 20 18 47 47 H 1.08997 * 110.45332 * 264.74511 * 26 17 16 48 48 H 1.09009 * 110.44417 * 142.20726 * 26 17 16 49 49 H 1.08002 * 119.68517 * 180.23253 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3496 1.5248 -0.0005 5 6 3.8709 2.8152 0.0000 6 6 5.2393 2.9897 -0.0011 7 6 6.0564 1.8495 -0.0082 8 6 7.5266 1.9813 -0.0157 9 8 8.2009 1.3120 0.7428 10 7 8.1215 2.8438 -0.8635 11 6 7.2945 3.7123 -1.7102 12 6 7.7641 3.5200 -3.1582 13 6 9.2430 3.8955 -3.2262 14 6 10.0878 2.9386 -2.3834 15 1 10.1418 1.9447 -2.8277 16 6 11.4890 3.5788 -2.2105 17 7 11.4635 4.3444 -0.9546 18 6 12.5069 5.0652 -0.4381 19 1 13.5041 4.9286 -0.8300 20 6 12.2831 5.9715 0.5892 21 7 11.0521 6.2715 0.9455 22 14 13.7291 6.7651 1.4661 23 1 14.0228 8.0815 0.8449 24 1 13.3932 6.9580 2.8997 25 1 14.9207 5.8865 1.3509 26 6 10.1260 4.2077 -0.3438 27 6 9.5692 2.8962 -0.9305 28 1 9.9953 2.0388 -0.4096 29 6 5.4585 0.5887 -0.0032 30 7 4.1475 0.4681 -0.0020 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5137 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 3.2114 3.6705 0.0004 37 1 5.6709 3.9798 -0.0012 38 1 6.2477 3.4193 -1.6298 39 1 7.4136 4.7511 -1.4024 40 1 7.1889 4.1735 -3.8140 41 1 7.6341 2.4829 -3.4676 42 1 9.3723 4.9113 -2.8529 43 1 9.5763 3.8496 -4.2630 44 1 12.2488 2.7992 -2.1545 45 1 11.6998 4.2426 -3.0489 46 1 10.8957 6.9046 1.6637 47 1 9.4920 5.0492 -0.6229 48 1 10.2083 4.1350 0.7407 49 1 6.0772 -0.2966 -0.0047 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050060490.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:54 Heat of formation + Delta-G solvation = 0.268681 kcal Electronic energy + Delta-G solvation = -30915.111243 eV Core-core repulsion = 26843.587593 eV Total energy + Delta-G solvation = -4071.523651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.17521 -40.12460 -38.47833 -37.54594 -35.40544 -33.27479 -32.57972 -32.32738 -31.92276 -30.39738 -29.27990 -27.42292 -25.64582 -24.75166 -24.52705 -23.46580 -22.60351 -22.00866 -20.77396 -20.01052 -18.87378 -18.30790 -17.39953 -16.94193 -16.84595 -16.59412 -15.96658 -14.98070 -14.93769 -14.76454 -14.49583 -14.30622 -14.21017 -14.10064 -13.88971 -13.51769 -13.32524 -13.00973 -12.92695 -12.77995 -12.60295 -12.35067 -12.16066 -11.98487 -11.90480 -11.63248 -11.18830 -11.05171 -10.99602 -10.85162 -10.71570 -10.42734 -10.31371 -10.13145 -9.99849 -9.90308 -9.82585 -9.67610 -9.48066 -8.73537 -8.59562 -8.19100 -6.78578 -5.76417 -3.10472 0.69419 0.94710 2.68238 2.83330 3.17269 3.39865 3.45988 3.48072 3.57045 4.01308 4.45512 4.49638 4.61312 4.66496 4.67813 4.79847 4.84039 4.92077 5.04569 5.10503 5.11834 5.29220 5.31774 5.43490 5.44701 5.47321 5.51726 5.58136 5.60223 5.65317 5.68983 5.85217 5.87321 5.93239 6.04051 6.08021 6.10747 6.19366 6.25335 6.39419 6.62505 6.69668 6.88296 6.89651 6.94244 7.35810 7.52334 7.55909 7.70028 7.76528 8.22952 8.37349 9.16621 9.79215 10.46811 11.36847 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019363 B = 0.002535 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.697228 B =11043.730700 C =11584.944477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.065 3.935 3 O -0.305 6.305 4 C 0.335 3.665 5 C -0.195 4.195 6 C -0.012 4.012 7 C -0.210 4.210 8 C 0.562 3.438 9 O -0.533 6.533 10 N -0.579 5.579 11 C 0.093 3.907 12 C -0.131 4.131 13 C -0.111 4.111 14 C -0.106 4.106 15 H 0.076 0.924 16 C 0.139 3.861 17 N -0.599 5.599 18 C -0.230 4.230 19 H 0.076 0.924 20 C -0.004 4.004 21 N -0.916 5.916 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.177 3.823 27 C 0.115 3.885 28 H 0.097 0.903 29 C 0.192 3.808 30 N -0.543 5.543 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.023 0.977 45 H 0.028 0.972 46 H 0.253 0.747 47 H 0.034 0.966 48 H 0.062 0.938 49 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.691 -9.350 -7.098 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.212 6.212 4 C 0.156 3.844 5 C -0.215 4.215 6 C -0.037 4.037 7 C -0.216 4.216 8 C 0.348 3.652 9 O -0.411 6.411 10 N -0.310 5.310 11 C -0.029 4.029 12 C -0.169 4.169 13 C -0.149 4.149 14 C -0.126 4.126 15 H 0.094 0.906 16 C 0.013 3.987 17 N -0.326 5.326 18 C -0.359 4.359 19 H 0.094 0.906 20 C -0.202 4.202 21 N -0.562 5.562 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.051 3.949 27 C 0.011 3.989 28 H 0.115 0.885 29 C 0.035 3.965 30 N -0.267 5.267 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.166 0.834 37 H 0.171 0.829 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.077 0.923 44 H 0.041 0.959 45 H 0.046 0.954 46 H 0.063 0.937 47 H 0.052 0.948 48 H 0.081 0.919 49 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -19.895 -10.169 -6.542 23.281 hybrid contribution 1.123 1.192 0.449 1.698 sum -18.772 -8.977 -6.093 21.682 Atomic orbital electron populations 1.21826 0.92957 1.02954 1.03342 1.22646 0.94759 0.80878 1.02769 1.86198 1.16858 1.30957 1.87179 1.20011 0.84023 0.90053 0.90267 1.20994 0.95470 0.95867 1.09181 1.21723 0.92118 0.99252 0.90616 1.20823 0.94946 0.95350 1.10444 1.17977 0.86474 0.80045 0.80665 1.90807 1.65035 1.45896 1.39313 1.47335 1.07016 1.37541 1.39081 1.22265 0.94858 0.95347 0.90476 1.21875 0.97449 1.01762 0.95797 1.21508 0.93454 1.00516 0.99425 1.22411 0.96623 0.98374 0.95180 0.90572 1.21531 0.92956 0.94001 0.90218 1.44365 1.10862 1.57383 1.19962 1.18987 0.87038 1.14795 1.15069 0.90625 1.24868 0.96547 0.98267 1.00483 1.69942 1.17900 1.36770 1.31577 0.86133 0.81612 0.79139 0.79058 1.21615 1.21617 1.20524 1.21401 0.85734 0.90134 0.97591 1.22044 0.77561 1.02905 0.96410 0.88480 1.22473 0.88607 0.96312 0.89080 1.67393 1.06211 1.32702 1.20347 0.91616 0.91622 0.90249 0.91435 0.91417 0.83427 0.82908 0.89565 0.90117 0.91053 0.91691 0.90630 0.92267 0.95888 0.95372 0.93716 0.94800 0.91939 0.81524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.28 37.16 0.38 -0.49 16 2 C 0.06 0.53 6.02 37.16 0.22 0.76 16 3 O -0.30 -3.20 10.10 -18.17 -0.18 -3.39 16 4 C 0.34 3.85 7.49 -16.95 -0.13 3.72 16 5 C -0.19 -1.98 10.02 -39.34 -0.39 -2.38 16 6 C -0.01 -0.13 7.40 -38.92 -0.29 -0.42 16 7 C -0.21 -2.80 5.12 -104.82 -0.54 -3.33 16 8 C 0.56 9.42 7.26 -12.43 -0.09 9.33 16 9 O -0.53 -10.97 16.35 5.30 0.09 -10.88 16 10 N -0.58 -9.44 2.73 -166.44 -0.45 -9.89 16 11 C 0.09 1.19 4.89 -3.66 -0.02 1.17 16 12 C -0.13 -1.55 6.12 -26.65 -0.16 -1.72 16 13 C -0.11 -1.63 4.67 -26.89 -0.13 -1.76 16 14 C -0.11 -1.81 3.56 -88.88 -0.32 -2.12 16 15 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 16 C 0.14 2.85 6.63 -2.64 -0.02 2.83 16 17 N -0.60 -15.15 3.40 -169.87 -0.58 -15.73 16 18 C -0.23 -6.41 10.22 -15.06 -0.15 -6.57 16 19 H 0.08 2.04 7.85 -52.48 -0.41 1.63 16 20 C 0.00 -0.13 5.39 -17.43 -0.09 -0.22 16 21 N -0.92 -26.77 10.84 55.49 0.60 -26.16 16 22 Si 0.91 22.16 29.56 -169.99 -5.03 17.14 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.18 4.25 4.57 -2.83 -0.01 4.23 16 27 C 0.12 2.23 3.02 -67.47 -0.20 2.03 16 28 H 0.10 2.09 6.99 -51.93 -0.36 1.72 16 29 C 0.19 2.41 10.86 -17.14 -0.19 2.22 16 30 N -0.54 -6.64 9.18 -12.96 -0.12 -6.75 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 35 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.15 1.52 6.70 -52.48 -0.35 1.17 16 38 H 0.09 0.91 4.25 -51.93 -0.22 0.69 16 39 H 0.08 1.09 7.62 -51.93 -0.40 0.69 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 1.31 7.25 -51.93 -0.38 0.93 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.03 0.57 7.77 -51.93 -0.40 0.17 16 46 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.03 0.86 6.78 -51.93 -0.35 0.50 16 48 H 0.06 1.75 7.25 -51.92 -0.38 1.37 16 49 H 0.17 1.92 8.06 -52.49 -0.42 1.49 16 LS Contribution 385.24 15.07 5.81 5.81 Total: -1.00 -32.93 385.24 -9.44 -42.37 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.46 Total: 0.21 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -2.12 Total: 7.29 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -0.55 Total: -58.54 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.10 Total: -14.27 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.93 -9.44 -42.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050060490.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.641 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds