Wall clock time and date at job start Wed Apr 1 2020 05:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46980 * 2 1 4 4 C 1.35690 * 116.99621 * 179.97438 * 3 2 1 5 5 C 1.38897 * 119.62005 * 180.25569 * 4 3 2 6 6 C 1.39580 * 118.94593 * 180.27141 * 5 4 3 7 7 C 1.48157 * 120.89159 * 179.75819 * 6 5 4 8 8 O 1.21505 * 120.00300 * 50.42357 * 7 6 5 9 9 N 1.34776 * 119.99600 * 230.42801 * 7 6 5 10 10 C 1.46805 * 119.61580 * 175.98499 * 9 7 6 11 11 C 1.51805 * 107.79427 * 231.86874 * 10 9 7 12 12 C 1.52750 * 109.35163 * 302.57599 * 11 10 9 13 13 C 1.52947 * 110.73369 * 62.96957 * 12 11 10 14 14 H 1.09005 * 112.27419 * 71.24414 * 13 12 11 15 15 C 1.55535 * 107.00984 * 195.25021 * 13 12 11 16 16 N 1.49349 * 103.80792 * 78.26385 * 15 13 12 17 17 C 1.36943 * 125.47299 * 204.41333 * 16 15 13 18 18 H 1.07998 * 119.99930 * 359.88350 * 17 16 15 19 19 C 1.38809 * 119.99846 * 179.89284 * 17 16 15 20 20 N 1.31623 * 119.99891 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00101 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46935 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47170 * 119.99499 * 21 19 17 24 24 H 1.48494 * 109.47111 * 239.99876 * 21 19 17 25 25 C 1.47283 * 108.82495 * 24.33385 * 16 15 13 26 26 C 1.45171 * 119.62017 * 356.00426 * 9 7 6 27 27 H 1.09001 * 109.70734 * 12.18446 * 26 9 7 28 28 C 1.39969 * 118.21289 * 359.48617 * 6 5 4 29 29 C 1.37979 * 119.13470 * 0.27160 * 28 6 5 30 30 N 1.31905 * 120.97545 * 359.97438 * 29 28 6 31 31 H 1.09004 * 109.47136 * 299.99864 * 1 2 3 32 32 H 1.09002 * 109.47329 * 59.99544 * 1 2 3 33 33 H 1.08993 * 109.47249 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47136 * 240.00136 * 2 1 3 35 35 H 1.08994 * 109.47203 * 120.00773 * 2 1 3 36 36 H 1.07999 * 120.52974 * 0.05517 * 5 4 3 37 37 H 1.08999 * 109.82319 * 351.76161 * 10 9 7 38 38 H 1.09008 * 109.82484 * 112.61697 * 10 9 7 39 39 H 1.09003 * 109.73739 * 182.28348 * 11 10 9 40 40 H 1.08994 * 108.66209 * 62.21636 * 11 10 9 41 41 H 1.09001 * 109.21838 * 302.66153 * 12 11 10 42 42 H 1.08994 * 109.22036 * 183.28352 * 12 11 10 43 43 H 1.08999 * 110.39342 * 196.65531 * 15 13 12 44 44 H 1.09006 * 110.39375 * 319.05010 * 15 13 12 45 45 H 0.97009 * 119.99695 * 180.02562 * 20 19 17 46 46 H 1.08998 * 109.98939 * 239.66967 * 25 16 15 47 47 H 1.09005 * 110.02014 * 118.36944 * 25 16 15 48 48 H 1.08002 * 120.42950 * 180.25007 * 28 6 5 49 49 H 1.07998 * 119.50759 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3515 1.5250 0.0005 5 6 3.8739 2.8120 0.0060 6 6 5.2597 2.9785 0.0007 7 6 5.8632 4.3316 0.0007 8 8 5.5018 5.1581 0.8148 9 7 6.8132 4.6458 -0.9023 10 6 7.3422 6.0143 -0.9525 11 6 7.2437 6.4973 -2.3883 12 6 8.0117 5.5404 -3.2980 13 6 7.3873 4.1445 -3.2660 14 1 6.4256 4.1102 -3.7781 15 6 8.4276 3.1665 -3.8828 16 7 9.4093 2.9476 -2.7788 17 6 10.7153 2.5685 -2.9401 18 1 11.1104 2.4011 -3.9311 19 6 11.5310 2.3992 -1.8299 20 7 11.0494 2.6036 -0.6221 21 14 13.3123 1.8815 -2.0498 22 1 13.6052 1.7179 -3.4965 23 1 14.2045 2.9226 -1.4794 24 1 13.5435 0.5930 -1.3487 25 6 8.7426 3.2080 -1.4915 26 6 7.3011 3.6271 -1.8143 27 1 6.6494 2.7543 -1.7731 28 6 6.0639 1.8329 0.0011 29 6 5.4634 0.5906 0.0010 30 7 4.1497 0.4716 0.0010 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.2183 3.6702 0.0106 37 1 6.7563 6.6612 -0.2996 38 1 8.3857 6.0190 -0.6374 39 1 7.6665 7.4987 -2.4696 40 1 6.1934 6.5153 -2.6789 41 1 9.0466 5.4783 -2.9615 42 1 7.9889 5.9203 -4.3194 43 1 7.9487 2.2271 -4.1588 44 1 8.9064 3.6193 -4.7512 45 1 11.6197 2.4857 0.1538 46 1 9.2548 4.0117 -0.9625 47 1 8.7403 2.3037 -0.8828 48 1 7.1404 1.9202 0.0012 49 1 6.0781 -0.2973 0.0010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050135760.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:59 Heat of formation + Delta-G solvation = 2.037567 kcal Electronic energy + Delta-G solvation = -31587.114163 eV Core-core repulsion = 27515.667217 eV Total energy + Delta-G solvation = -4071.446946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.07761 -40.04844 -38.29673 -37.75201 -35.02849 -33.44828 -32.52411 -32.27601 -31.78189 -29.96183 -29.30085 -27.57901 -25.97468 -24.90176 -23.84339 -23.41716 -22.78846 -21.78944 -20.81408 -20.05575 -19.05652 -17.64415 -17.24896 -17.03936 -16.46101 -16.26464 -15.90061 -15.67559 -14.93126 -14.76024 -14.57084 -14.25962 -14.02701 -13.99076 -13.88905 -13.63636 -13.21326 -12.85579 -12.80427 -12.60304 -12.47440 -12.30973 -11.96586 -11.85350 -11.65986 -11.58588 -11.13316 -11.09177 -10.91909 -10.84726 -10.70701 -10.45213 -10.28246 -10.18199 -10.04760 -9.98466 -9.80702 -9.73355 -9.38085 -8.71784 -8.50128 -8.27156 -6.94692 -5.80021 -3.13662 0.86503 1.14558 2.65993 2.91354 3.22608 3.34991 3.41204 3.43310 3.74039 4.23341 4.39760 4.48218 4.80798 4.84566 4.92945 4.94339 5.01989 5.12337 5.16144 5.18874 5.22582 5.32006 5.42670 5.45236 5.48725 5.61346 5.61915 5.64046 5.66523 5.78044 5.81701 5.84110 5.93273 6.04165 6.12323 6.16875 6.18721 6.24132 6.30063 6.37306 6.54658 6.61081 6.77745 6.86894 7.15886 7.23568 7.40674 7.65225 7.72160 7.77128 8.11128 8.24084 9.11200 9.70441 10.35702 11.31601 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012178 B = 0.003401 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.738183 B = 8230.723547 C = 9352.120952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.066 3.934 3 O -0.308 6.308 4 C 0.317 3.683 5 C -0.146 4.146 6 C -0.041 4.041 7 C 0.560 3.440 8 O -0.538 6.538 9 N -0.574 5.574 10 C 0.112 3.888 11 C -0.130 4.130 12 C -0.110 4.110 13 C -0.111 4.111 14 H 0.076 0.924 15 C 0.134 3.866 16 N -0.603 5.603 17 C -0.226 4.226 18 H 0.080 0.920 19 C -0.007 4.007 20 N -0.922 5.922 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.177 3.823 26 C 0.098 3.902 27 H 0.091 0.909 28 C -0.176 4.176 29 C 0.140 3.860 30 N -0.531 5.531 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.145 0.855 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.057 0.943 43 H 0.024 0.976 44 H 0.048 0.952 45 H 0.252 0.748 46 H 0.055 0.945 47 H 0.048 0.952 48 H 0.158 0.842 49 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.673 -0.569 -1.582 15.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.215 6.215 4 C 0.138 3.862 5 C -0.168 4.168 6 C -0.052 4.052 7 C 0.347 3.653 8 O -0.416 6.416 9 N -0.304 5.304 10 C -0.010 4.010 11 C -0.168 4.168 12 C -0.147 4.147 13 C -0.131 4.131 14 H 0.094 0.906 15 C 0.008 3.992 16 N -0.330 5.330 17 C -0.354 4.354 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.570 5.570 21 Si 0.742 3.258 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.052 3.948 26 C -0.006 4.006 27 H 0.109 0.891 28 C -0.196 4.196 29 C -0.015 4.015 30 N -0.255 5.255 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.163 0.837 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.042 0.958 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.066 0.934 48 H 0.175 0.825 49 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -16.246 -0.793 -1.034 16.298 hybrid contribution 1.502 0.159 -0.076 1.512 sum -14.744 -0.635 -1.110 14.800 Atomic orbital electron populations 1.21820 0.93135 1.02799 1.03288 1.22591 0.94592 0.81113 1.02596 1.86225 1.16690 1.30623 1.87986 1.19534 0.84081 0.89475 0.93129 1.20926 0.94047 0.96217 1.05563 1.20085 0.93162 0.94329 0.97592 1.18155 0.79430 0.86465 0.81238 1.90757 1.62853 1.49859 1.38159 1.47415 1.37529 1.11530 1.33962 1.21424 1.00218 0.81807 0.97516 1.21582 1.00796 0.99292 0.95165 1.21443 1.01053 0.93344 0.98896 1.22587 0.98598 0.96434 0.95446 0.90553 1.22115 0.89913 0.94893 0.92235 1.44847 1.07469 1.80968 0.99759 1.19098 0.84446 1.38749 0.93077 0.90258 1.24774 0.98354 1.01908 0.95311 1.69926 1.34788 1.55341 0.96954 0.86060 0.84648 0.77852 0.77279 1.20557 1.21822 1.21762 1.21315 0.85356 0.99788 0.88374 1.22305 0.99829 0.89706 0.88782 0.89094 1.22585 1.02815 0.92141 1.02094 1.22411 0.88655 0.97462 0.92931 1.67193 1.06923 1.33148 1.18274 0.91680 0.91675 0.90358 0.91555 0.91605 0.83687 0.89107 0.90582 0.90861 0.92185 0.89886 0.92411 0.95825 0.93328 0.93718 0.92660 0.93446 0.82495 0.81490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.07 0.67 6.03 37.16 0.22 0.89 16 3 O -0.31 -3.99 10.11 -18.77 -0.19 -4.18 16 4 C 0.32 4.52 7.49 -17.16 -0.13 4.39 16 5 C -0.15 -2.14 9.79 -38.84 -0.38 -2.52 16 6 C -0.04 -0.64 4.92 -104.68 -0.52 -1.16 16 7 C 0.56 9.78 7.26 -12.19 -0.09 9.70 16 8 O -0.54 -10.60 16.40 5.36 0.09 -10.51 16 9 N -0.57 -9.66 2.72 -167.39 -0.45 -10.12 16 10 C 0.11 1.75 6.12 -4.48 -0.03 1.72 16 11 C -0.13 -1.76 5.99 -27.47 -0.16 -1.93 16 12 C -0.11 -1.67 4.84 -26.89 -0.13 -1.80 16 13 C -0.11 -1.77 3.67 -88.58 -0.32 -2.10 16 14 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 15 C 0.13 2.49 6.67 -1.11 -0.01 2.49 16 16 N -0.60 -13.88 3.03 -168.36 -0.51 -14.39 16 17 C -0.23 -5.82 10.29 -15.06 -0.15 -5.98 16 18 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 19 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 20 N -0.92 -25.41 10.33 55.49 0.57 -24.83 16 21 Si 0.91 21.19 29.55 -169.99 -5.02 16.17 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 C 0.18 3.85 4.30 -3.33 -0.01 3.84 16 26 C 0.10 1.70 2.15 -67.64 -0.15 1.55 16 27 H 0.09 1.53 4.71 -51.93 -0.24 1.28 16 28 C -0.18 -2.64 7.50 -39.03 -0.29 -2.94 16 29 C 0.14 1.90 11.17 -17.62 -0.20 1.70 16 30 N -0.53 -7.47 9.18 -13.38 -0.12 -7.59 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 35 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 36 H 0.15 1.99 8.06 -52.49 -0.42 1.57 16 37 H 0.09 1.39 6.97 -51.93 -0.36 1.03 16 38 H 0.08 1.28 7.54 -51.92 -0.39 0.89 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 1.53 7.27 -51.93 -0.38 1.16 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.05 0.88 7.99 -51.93 -0.41 0.46 16 45 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 46 H 0.06 1.37 6.51 -51.93 -0.34 1.03 16 47 H 0.05 1.14 5.91 -51.93 -0.31 0.83 16 48 H 0.16 2.56 5.34 -52.49 -0.28 2.28 16 49 H 0.17 1.85 8.06 -52.49 -0.42 1.42 16 LS Contribution 382.44 15.07 5.76 5.76 Total: -1.00 -30.00 382.44 -9.27 -39.27 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.33 Total: 3.59 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -2.06 Total: 6.83 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.51 Total: -56.93 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.10 Total: -14.69 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.00 -9.27 -39.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050135760.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.308 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds