Wall clock time and date at job start Wed Apr 1 2020 05:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46980 * 2 1 4 4 C 1.35690 * 116.99621 * 179.97438 * 3 2 1 5 5 C 1.38897 * 119.62005 * 180.25569 * 4 3 2 6 6 C 1.39580 * 118.94593 * 180.27141 * 5 4 3 7 7 C 1.48157 * 120.89159 * 179.75819 * 6 5 4 8 8 O 1.21505 * 120.00300 * 50.42357 * 7 6 5 9 9 N 1.34776 * 119.99600 * 230.42801 * 7 6 5 10 10 C 1.46805 * 119.61580 * 175.98499 * 9 7 6 11 11 C 1.51805 * 107.79427 * 231.86874 * 10 9 7 12 12 C 1.52750 * 109.35163 * 302.57599 * 11 10 9 13 13 C 1.52947 * 110.73369 * 62.96957 * 12 11 10 14 14 H 1.09005 * 112.27419 * 71.24414 * 13 12 11 15 15 C 1.55535 * 107.00984 * 195.25021 * 13 12 11 16 16 N 1.49349 * 103.80792 * 78.26385 * 15 13 12 17 17 C 1.36943 * 125.47299 * 204.41333 * 16 15 13 18 18 H 1.07998 * 119.99930 * 359.88350 * 17 16 15 19 19 C 1.38809 * 119.99846 * 179.89284 * 17 16 15 20 20 N 1.31623 * 119.99891 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00101 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46935 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47170 * 119.99499 * 21 19 17 24 24 H 1.48494 * 109.47111 * 239.99876 * 21 19 17 25 25 C 1.47283 * 108.82495 * 24.33385 * 16 15 13 26 26 C 1.45171 * 119.62017 * 356.00426 * 9 7 6 27 27 H 1.09001 * 109.70734 * 12.18446 * 26 9 7 28 28 C 1.39969 * 118.21289 * 359.48617 * 6 5 4 29 29 C 1.37979 * 119.13470 * 0.27160 * 28 6 5 30 30 N 1.31905 * 120.97545 * 359.97438 * 29 28 6 31 31 H 1.09004 * 109.47136 * 299.99864 * 1 2 3 32 32 H 1.09002 * 109.47329 * 59.99544 * 1 2 3 33 33 H 1.08993 * 109.47249 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47136 * 240.00136 * 2 1 3 35 35 H 1.08994 * 109.47203 * 120.00773 * 2 1 3 36 36 H 1.07999 * 120.52974 * 0.05517 * 5 4 3 37 37 H 1.08999 * 109.82319 * 351.76161 * 10 9 7 38 38 H 1.09008 * 109.82484 * 112.61697 * 10 9 7 39 39 H 1.09003 * 109.73739 * 182.28348 * 11 10 9 40 40 H 1.08994 * 108.66209 * 62.21636 * 11 10 9 41 41 H 1.09001 * 109.21838 * 302.66153 * 12 11 10 42 42 H 1.08994 * 109.22036 * 183.28352 * 12 11 10 43 43 H 1.08999 * 110.39342 * 196.65531 * 15 13 12 44 44 H 1.09006 * 110.39375 * 319.05010 * 15 13 12 45 45 H 0.97009 * 119.99695 * 180.02562 * 20 19 17 46 46 H 1.08998 * 109.98939 * 239.66967 * 25 16 15 47 47 H 1.09005 * 110.02014 * 118.36944 * 25 16 15 48 48 H 1.08002 * 120.42950 * 180.25007 * 28 6 5 49 49 H 1.07998 * 119.50759 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3515 1.5250 0.0005 5 6 3.8739 2.8120 0.0060 6 6 5.2597 2.9785 0.0007 7 6 5.8632 4.3316 0.0007 8 8 5.5018 5.1581 0.8148 9 7 6.8132 4.6458 -0.9023 10 6 7.3422 6.0143 -0.9525 11 6 7.2437 6.4973 -2.3883 12 6 8.0117 5.5404 -3.2980 13 6 7.3873 4.1445 -3.2660 14 1 6.4256 4.1102 -3.7781 15 6 8.4276 3.1665 -3.8828 16 7 9.4093 2.9476 -2.7788 17 6 10.7153 2.5685 -2.9401 18 1 11.1104 2.4011 -3.9311 19 6 11.5310 2.3992 -1.8299 20 7 11.0494 2.6036 -0.6221 21 14 13.3123 1.8815 -2.0498 22 1 13.6052 1.7179 -3.4965 23 1 14.2045 2.9226 -1.4794 24 1 13.5435 0.5930 -1.3487 25 6 8.7426 3.2080 -1.4915 26 6 7.3011 3.6271 -1.8143 27 1 6.6494 2.7543 -1.7731 28 6 6.0639 1.8329 0.0011 29 6 5.4634 0.5906 0.0010 30 7 4.1497 0.4716 0.0010 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.2183 3.6702 0.0106 37 1 6.7563 6.6612 -0.2996 38 1 8.3857 6.0190 -0.6374 39 1 7.6665 7.4987 -2.4696 40 1 6.1934 6.5153 -2.6789 41 1 9.0466 5.4783 -2.9615 42 1 7.9889 5.9203 -4.3194 43 1 7.9487 2.2271 -4.1588 44 1 8.9064 3.6193 -4.7512 45 1 11.6197 2.4857 0.1538 46 1 9.2548 4.0117 -0.9625 47 1 8.7403 2.3037 -0.8828 48 1 7.1404 1.9202 0.0012 49 1 6.0781 -0.2973 0.0010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050135760.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:58 Heat of formation + Delta-G solvation = -16.101751 kcal Electronic energy + Delta-G solvation = -31587.900743 eV Core-core repulsion = 27515.667217 eV Total energy + Delta-G solvation = -4072.233526 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.33526 -41.26886 -39.64987 -38.90739 -36.60958 -34.74122 -34.16476 -33.32633 -32.90897 -31.11778 -30.85734 -29.14313 -27.41285 -26.39374 -25.16813 -24.53014 -23.78006 -23.11053 -22.29468 -21.48595 -20.26478 -18.99172 -18.82000 -18.41024 -17.64728 -17.32512 -17.21770 -17.00590 -16.56216 -16.07240 -15.99933 -15.63966 -15.37324 -15.12468 -14.93881 -14.85428 -14.54270 -14.33903 -14.11510 -13.77366 -13.60007 -13.41627 -13.26590 -13.18402 -13.01339 -12.92636 -12.75650 -12.50115 -12.44219 -12.11460 -12.06860 -11.74208 -11.73273 -11.69447 -11.55685 -11.42787 -11.29369 -10.99344 -10.68794 -10.63261 -9.69961 -9.61473 -8.85606 -7.81024 -5.14861 -0.33354 0.01156 1.38602 1.47952 1.49328 1.58290 1.68630 2.05741 2.51844 2.58752 3.07814 3.26330 3.39234 3.60650 3.72909 3.78877 3.87223 3.90550 3.96790 4.03778 4.04279 4.11357 4.17808 4.22094 4.34379 4.47466 4.48523 4.53783 4.57083 4.65580 4.77511 4.83081 4.90033 4.91325 4.94800 4.97627 4.99845 5.05692 5.17391 5.18602 5.20514 5.27889 5.43088 5.47735 5.52830 5.58096 5.77760 6.14289 6.19423 6.24562 6.65568 6.84981 7.12795 7.78372 8.42977 9.28588 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012178 B = 0.003401 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.738183 B = 8230.723547 C = 9352.120952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 O -0.313 6.313 4 C 0.318 3.682 5 C -0.147 4.147 6 C -0.050 4.050 7 C 0.559 3.441 8 O -0.564 6.564 9 N -0.574 5.574 10 C 0.108 3.892 11 C -0.119 4.119 12 C -0.106 4.106 13 C -0.100 4.100 14 H 0.110 0.890 15 C 0.130 3.870 16 N -0.621 5.621 17 C -0.228 4.228 18 H 0.084 0.916 19 C -0.063 4.063 20 N -0.949 5.949 21 Si 0.969 3.031 22 H -0.266 1.266 23 H -0.299 1.299 24 H -0.296 1.296 25 C 0.194 3.806 26 C 0.112 3.888 27 H 0.101 0.899 28 C -0.184 4.184 29 C 0.149 3.851 30 N -0.531 5.531 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.153 0.847 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.044 0.956 42 H 0.083 0.917 43 H 0.034 0.966 44 H 0.057 0.943 45 H 0.243 0.757 46 H 0.015 0.985 47 H 0.018 0.982 48 H 0.139 0.861 49 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.629 -0.912 -3.396 17.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.015 4.015 3 O -0.220 6.220 4 C 0.139 3.861 5 C -0.169 4.169 6 C -0.060 4.060 7 C 0.348 3.652 8 O -0.444 6.444 9 N -0.303 5.303 10 C -0.013 4.013 11 C -0.156 4.156 12 C -0.143 4.143 13 C -0.119 4.119 14 H 0.128 0.872 15 C 0.006 3.994 16 N -0.348 5.348 17 C -0.357 4.357 18 H 0.102 0.898 19 C -0.256 4.256 20 N -0.598 5.598 21 Si 0.799 3.201 22 H -0.190 1.190 23 H -0.226 1.226 24 H -0.223 1.223 25 C 0.068 3.932 26 C 0.008 3.992 27 H 0.118 0.882 28 C -0.204 4.204 29 C -0.006 4.006 30 N -0.256 5.256 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.171 0.829 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.052 0.948 44 H 0.076 0.924 45 H 0.053 0.947 46 H 0.033 0.967 47 H 0.036 0.964 48 H 0.157 0.843 49 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -18.227 -1.136 -2.897 18.490 hybrid contribution 2.069 0.218 0.486 2.136 sum -16.158 -0.918 -2.411 16.363 Atomic orbital electron populations 1.21840 0.90899 1.04326 1.03380 1.22870 0.96340 0.79743 1.02594 1.86240 1.15773 1.32476 1.87558 1.19642 0.84767 0.89318 0.92396 1.20982 0.93548 0.96876 1.05482 1.19975 0.93783 0.93457 0.98805 1.18430 0.79295 0.86906 0.80614 1.90734 1.63853 1.50868 1.38972 1.47464 1.37243 1.11853 1.33707 1.21511 0.98850 0.81455 0.99498 1.21528 1.01657 0.99774 0.92687 1.21385 0.98906 0.93477 1.00580 1.22633 0.99370 0.96070 0.93867 0.87170 1.22313 0.89655 0.96095 0.91364 1.45086 1.07561 1.80602 1.01589 1.19439 0.85870 1.37253 0.93123 0.89792 1.25487 1.01790 1.03054 0.95282 1.70141 1.35476 1.56924 0.97304 0.85132 0.80569 0.76719 0.77660 1.19041 1.22640 1.22290 1.20937 0.87689 0.97081 0.87516 1.22034 0.96913 0.90420 0.89860 0.88178 1.22430 1.01839 0.92787 1.03377 1.22743 0.88743 0.97610 0.91504 1.67294 1.06911 1.33044 1.18318 0.91650 0.91499 0.88102 0.91459 0.91682 0.82935 0.88780 0.92853 0.88641 0.90484 0.93730 0.89858 0.94766 0.92440 0.94718 0.96668 0.96414 0.84291 0.79120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 71.98 0.74 -1.06 16 2 C 0.06 1.08 6.03 71.98 0.43 1.51 16 3 O -0.31 -7.60 10.11 -90.09 -0.91 -8.51 16 4 C 0.32 8.63 7.49 84.80 0.63 9.26 16 5 C -0.15 -4.19 9.79 22.75 0.22 -3.96 16 6 C -0.05 -1.55 4.92 -19.90 -0.10 -1.65 16 7 C 0.56 19.66 7.26 86.88 0.63 20.29 16 8 O -0.56 -22.43 16.40 -3.73 -0.06 -22.49 16 9 N -0.57 -19.37 2.72 -801.80 -2.18 -21.54 16 10 C 0.11 3.39 6.12 85.93 0.53 3.92 16 11 C -0.12 -2.96 5.99 30.12 0.18 -2.78 16 12 C -0.11 -3.02 4.84 30.49 0.15 -2.88 16 13 C -0.10 -2.98 3.67 -9.48 -0.03 -3.01 16 14 H 0.11 2.67 8.14 -2.38 -0.02 2.65 16 15 C 0.13 4.64 6.67 86.70 0.58 5.22 16 16 N -0.62 -28.93 3.03 -686.55 -2.08 -31.01 16 17 C -0.23 -11.88 10.29 84.03 0.86 -11.02 16 18 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 19 C -0.06 -3.42 5.49 84.86 0.47 -2.96 16 20 N -0.95 -54.61 10.33 21.65 0.22 -54.38 16 21 Si 0.97 44.38 29.55 68.60 2.03 46.41 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 23 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 25 C 0.19 8.75 4.30 86.42 0.37 9.12 16 26 C 0.11 3.87 2.15 45.89 0.10 3.97 16 27 H 0.10 3.31 4.71 -2.39 -0.01 3.30 16 28 C -0.18 -5.54 7.50 22.63 0.17 -5.38 16 29 C 0.15 3.88 11.17 84.62 0.94 4.83 16 30 N -0.53 -14.16 9.18 -309.14 -2.84 -17.00 16 31 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 1.21 8.10 -2.38 -0.02 1.20 16 35 H 0.06 1.19 8.10 -2.39 -0.02 1.18 16 36 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 37 H 0.09 2.89 6.97 -2.39 -0.02 2.87 16 38 H 0.05 1.90 7.54 -2.38 -0.02 1.88 16 39 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.04 1.64 7.27 -2.39 -0.02 1.62 16 42 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.06 1.95 7.99 -2.38 -0.02 1.93 16 45 H 0.24 13.88 8.31 -92.70 -0.77 13.11 16 46 H 0.02 0.80 6.51 -2.39 -0.02 0.79 16 47 H 0.02 0.90 5.91 -2.38 -0.01 0.89 16 48 H 0.14 4.76 5.34 -2.91 -0.02 4.75 16 49 H 0.19 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -66.60 382.44 2.02 -64.59 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.96 Total: 20.53 kcal Atomic # 6 Polarization: 16.54 SS G_CDS: 6.88 Total: 23.41 kcal Atomic # 7 Polarization: -117.07 SS G_CDS: -6.88 Total: -123.94 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.97 Total: -30.99 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -66.60 2.02 -64.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050135760.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.486 kcal (2) G-P(sol) polarization free energy of solvation -66.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds