Wall clock time and date at job start Wed Apr 1 2020 05:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.46753 * 2 1 4 4 C 1.35644 * 116.99812 * 180.02562 * 3 2 1 5 5 C 1.39345 * 120.54490 * 359.71637 * 4 3 2 6 6 C 1.38302 * 118.44024 * 179.76573 * 5 4 3 7 7 C 1.38764 * 119.44670 * 0.55499 * 6 5 4 8 8 N 1.31378 * 121.06340 * 359.68562 * 7 6 5 9 9 C 1.32858 * 121.69918 * 0.02562 * 8 7 6 10 10 C 1.47829 * 119.78224 * 179.97438 * 9 8 7 11 11 O 1.21554 * 119.99695 * 180.02562 * 10 9 8 12 12 N 1.34772 * 120.00236 * 0.02885 * 10 9 8 13 13 C 1.47167 * 135.99999 * 359.62840 * 12 10 9 14 14 C 1.52651 * 87.97167 * 206.72054 * 13 12 10 15 15 C 1.47165 * 136.00328 * 179.97438 * 12 10 9 16 16 C 1.52553 * 113.89373 * 88.16761 * 14 13 12 17 17 C 1.53354 * 109.12964 * 190.30610 * 16 14 13 18 18 N 1.46893 * 108.75003 * 307.76210 * 17 16 14 19 19 C 1.36934 * 120.46314 * 235.60091 * 18 17 16 20 20 H 1.07998 * 119.99945 * 149.72694 * 19 18 17 21 21 C 1.38815 * 119.99704 * 329.72583 * 19 18 17 22 22 N 1.31628 * 119.99718 * 158.00851 * 21 19 18 23 23 Si 1.86792 * 120.00432 * 338.00765 * 21 19 18 24 24 H 1.48500 * 109.47349 * 87.66656 * 23 21 19 25 25 H 1.48501 * 109.47585 * 207.66962 * 23 21 19 26 26 H 1.48501 * 109.47195 * 327.67121 * 23 21 19 27 27 C 1.46896 * 119.07316 * 55.62432 * 18 17 16 28 28 C 1.52545 * 114.26054 * 220.75940 * 14 13 12 29 29 H 1.08998 * 109.47578 * 60.00410 * 1 2 3 30 30 H 1.09000 * 109.46440 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46799 * 299.99725 * 1 2 3 32 32 H 1.09000 * 109.47435 * 240.00660 * 2 1 3 33 33 H 1.08998 * 109.47578 * 119.99590 * 2 1 3 34 34 H 1.08002 * 120.77482 * 0.02562 * 5 4 3 35 35 H 1.07999 * 120.27497 * 180.24071 * 6 5 4 36 36 H 1.07993 * 119.46915 * 179.70617 * 7 6 5 37 37 H 1.09003 * 113.48915 * 321.40944 * 13 12 10 38 38 H 1.09000 * 113.48996 * 91.91901 * 13 12 10 39 39 H 1.08994 * 113.49266 * 268.08463 * 15 12 10 40 40 H 1.08998 * 113.48506 * 38.53095 * 15 12 10 41 41 H 1.08996 * 109.53003 * 310.20613 * 16 14 13 42 42 H 1.09003 * 109.52522 * 70.41704 * 16 14 13 43 43 H 1.08996 * 109.59137 * 187.98180 * 17 16 14 44 44 H 1.09000 * 109.58823 * 67.54094 * 17 16 14 45 45 H 0.96997 * 120.00066 * 180.02562 * 22 21 19 46 46 H 1.08997 * 109.59083 * 184.58745 * 27 18 17 47 47 H 1.08995 * 109.59032 * 64.14482 * 27 18 17 48 48 H 1.09000 * 109.53272 * 289.75377 * 28 14 13 49 49 H 1.09010 * 109.52609 * 49.89483 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3510 1.5251 -0.0005 5 6 4.2104 0.4282 0.0049 6 6 5.5739 0.6597 -0.0009 7 6 6.0442 1.9652 -0.0001 8 7 5.2152 2.9844 -0.0001 9 6 3.8978 2.8127 -0.0004 10 6 3.0039 3.9901 0.0001 11 8 1.7979 3.8376 0.0003 12 7 3.5259 5.2326 0.0003 13 6 4.8785 5.8126 0.0068 14 6 4.2879 7.0452 0.6866 15 6 2.9936 6.6046 0.0004 16 6 4.2484 6.9520 2.2087 17 6 3.4124 8.1126 2.7618 18 7 3.9219 9.3709 2.2006 19 6 4.3154 10.3901 3.0260 20 1 5.0971 11.0667 2.7137 21 6 3.7095 10.5537 4.2642 22 7 4.3316 11.2118 5.2195 23 14 2.0115 9.8400 4.5747 24 1 2.1424 8.4379 5.0463 25 1 1.3167 10.6474 5.6095 26 1 1.2252 9.8672 3.3153 27 6 4.0030 9.5206 0.7415 28 6 4.8435 8.3702 0.1742 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.8207 -0.5790 0.0092 35 1 6.2667 -0.1687 -0.0009 36 1 7.1088 2.1463 0.0002 37 1 5.5821 5.2670 0.6356 38 1 5.2703 6.0123 -0.9906 39 1 2.8678 7.0219 -0.9987 40 1 2.1073 6.7266 0.6230 41 1 3.7972 6.0048 2.5042 42 1 5.2624 7.0127 2.6039 43 1 3.4948 8.1371 3.8483 44 1 2.3691 7.9806 2.4751 45 1 3.9084 11.3258 6.0848 46 1 4.4743 10.4727 0.4975 47 1 3.0008 9.4864 0.3144 48 1 5.8784 8.4810 0.4978 49 1 4.7985 8.3874 -0.9149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050775637.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:42 Heat of formation + Delta-G solvation = 36.763313 kcal Electronic energy + Delta-G solvation = -30952.860728 eV Core-core repulsion = 26882.919604 eV Total energy + Delta-G solvation = -4069.941125 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.26569 -40.46526 -38.60618 -38.01535 -36.05937 -32.90790 -32.42895 -32.31553 -30.72550 -30.43991 -30.15418 -27.37965 -26.09285 -25.11165 -24.15489 -23.49420 -22.83123 -22.51671 -21.05224 -19.88049 -18.54338 -18.10732 -17.51527 -17.09129 -16.61035 -16.45179 -15.77963 -15.66734 -15.28174 -15.07724 -14.70167 -14.52158 -14.09884 -13.75952 -13.69773 -13.51254 -13.41557 -13.05913 -13.00406 -12.87801 -12.78694 -12.57594 -12.33894 -12.00519 -11.70774 -11.63662 -11.61794 -11.46069 -11.28449 -10.68322 -10.51479 -10.41013 -10.28997 -10.18907 -9.96745 -9.82944 -9.72217 -9.43495 -9.38838 -8.81712 -8.52186 -8.40806 -6.87181 -5.92032 -3.27590 0.39646 0.88719 2.70040 2.73186 2.90909 3.38523 3.53803 3.58600 3.66535 3.94611 4.19226 4.28350 4.51507 4.52364 4.58209 4.59179 4.66694 4.77908 4.81997 4.98183 5.03597 5.12743 5.23013 5.27663 5.44298 5.45471 5.46060 5.51317 5.57861 5.61663 5.75667 5.78693 5.88282 5.89913 5.98639 6.06755 6.13139 6.14598 6.25873 6.40391 6.46544 6.56245 6.71143 6.76613 6.80292 6.89320 7.00863 7.47419 7.87853 8.04807 8.29456 8.38746 9.00925 9.77536 10.17258 11.24102 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015274 B = 0.002844 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.777566 B = 9843.747006 C =10595.978796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.272 6.272 4 C 0.138 3.862 5 C -0.178 4.178 6 C -0.109 4.109 7 C 0.055 3.945 8 N -0.412 5.412 9 C 0.053 3.947 10 C 0.595 3.405 11 O -0.522 6.522 12 N -0.625 5.625 13 C 0.119 3.881 14 C -0.083 4.083 15 C 0.113 3.887 16 C -0.104 4.104 17 C 0.130 3.870 18 N -0.604 5.604 19 C -0.260 4.260 20 H 0.084 0.916 21 C 0.026 3.974 22 N -0.907 5.907 23 Si 0.878 3.122 24 H -0.286 1.286 25 H -0.303 1.303 26 H -0.272 1.272 27 C 0.148 3.852 28 C -0.116 4.116 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.165 0.835 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.022 0.978 45 H 0.262 0.738 46 H 0.065 0.935 47 H 0.022 0.978 48 H 0.070 0.930 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.644 -25.172 -13.982 28.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.182 6.182 4 C 0.087 3.913 5 C -0.205 4.205 6 C -0.129 4.129 7 C -0.105 4.105 8 N -0.123 5.123 9 C -0.087 4.087 10 C 0.383 3.617 11 O -0.398 6.398 12 N -0.359 5.359 13 C -0.004 4.004 14 C -0.084 4.084 15 C -0.009 4.009 16 C -0.144 4.144 17 C 0.004 3.996 18 N -0.328 5.328 19 C -0.388 4.388 20 H 0.101 0.899 21 C -0.173 4.173 22 N -0.550 5.550 23 Si 0.708 3.292 24 H -0.214 1.214 25 H -0.231 1.231 26 H -0.197 1.197 27 C 0.022 3.978 28 C -0.155 4.155 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.183 0.817 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.040 0.960 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.040 0.960 48 H 0.089 0.911 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.975 -24.373 -13.816 28.033 hybrid contribution -1.064 -1.723 0.261 2.042 sum -0.089 -26.096 -13.554 29.406 Atomic orbital electron populations 1.21742 0.92157 1.02634 1.04228 1.22951 0.96800 0.81988 1.01163 1.86441 1.16833 1.28672 1.86213 1.20015 0.84300 0.93687 0.93301 1.21735 0.94181 0.98644 1.05894 1.22209 0.95223 0.98976 0.96461 1.22760 1.00053 0.87834 0.99895 1.67782 1.01706 1.35143 1.07706 1.20651 0.90303 0.90827 1.06874 1.17064 0.86519 0.80657 0.77463 1.90834 1.13677 1.84669 1.50596 1.49323 1.11349 1.03923 1.71262 1.23083 0.85654 0.91184 1.00469 1.21707 0.95316 0.94736 0.96657 1.23123 0.98889 0.78382 1.00469 1.21682 1.01988 0.98876 0.91823 1.21330 0.94469 0.85404 0.98373 1.44330 1.75878 1.11792 1.00808 1.18889 1.14797 1.07694 0.97410 0.89879 1.25338 0.97936 0.97647 0.96349 1.69859 1.37190 1.44824 1.03077 0.87035 0.87255 0.77508 0.77429 1.21375 1.23112 1.19748 1.20935 0.96316 0.95997 0.84503 1.21856 1.00978 0.94105 0.98597 0.91232 0.90380 0.91145 0.91979 0.91913 0.83756 0.84000 0.81743 0.89461 0.90205 0.89851 0.90411 0.92844 0.91032 0.90745 0.96030 0.92813 0.91697 0.95969 0.91121 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.16 0.38 -0.73 16 2 C 0.05 0.38 5.48 37.16 0.20 0.58 16 3 O -0.27 -3.56 8.20 -40.58 -0.33 -3.89 16 4 C 0.14 1.72 6.71 -38.55 -0.26 1.46 16 5 C -0.18 -1.51 9.13 -39.15 -0.36 -1.86 16 6 C -0.11 -0.77 10.10 -39.36 -0.40 -1.17 16 7 C 0.06 0.49 11.17 -17.55 -0.20 0.29 16 8 N -0.41 -5.13 8.03 -9.71 -0.08 -5.21 16 9 C 0.05 0.76 6.76 -82.88 -0.56 0.20 16 10 C 0.59 10.24 8.05 -12.34 -0.10 10.14 16 11 O -0.52 -10.45 15.91 -16.63 -0.26 -10.72 16 12 N -0.62 -9.90 3.46 -186.43 -0.65 -10.54 16 13 C 0.12 1.62 6.61 -8.37 -0.06 1.56 16 14 C -0.08 -1.29 0.83 -155.16 -0.13 -1.42 16 15 C 0.11 1.77 7.56 -8.20 -0.06 1.71 16 16 C -0.10 -1.91 5.26 -26.78 -0.14 -2.05 16 17 C 0.13 2.88 4.14 -3.64 -0.02 2.87 16 18 N -0.60 -14.21 2.68 -172.18 -0.46 -14.67 16 19 C -0.26 -7.21 9.97 -15.06 -0.15 -7.36 16 20 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 21 C 0.03 0.77 5.17 -17.43 -0.09 0.68 16 22 N -0.91 -27.90 13.97 55.49 0.78 -27.13 16 23 Si 0.88 22.83 24.56 -169.99 -4.18 18.66 16 24 H -0.29 -7.23 6.44 56.52 0.36 -6.86 16 25 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 26 H -0.27 -7.05 7.11 56.52 0.40 -6.65 16 27 C 0.15 2.81 6.42 -3.64 -0.02 2.79 16 28 C -0.12 -1.76 5.31 -26.78 -0.14 -1.90 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.38 7.71 -51.93 -0.40 -0.02 16 33 H 0.06 0.40 7.69 -51.93 -0.40 0.00 16 34 H 0.14 0.79 6.46 -52.49 -0.34 0.45 16 35 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 36 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 37 H 0.09 1.19 7.14 -51.93 -0.37 0.82 16 38 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 39 H 0.08 1.14 8.06 -51.93 -0.42 0.72 16 40 H 0.08 1.35 7.54 -51.93 -0.39 0.96 16 41 H 0.05 0.97 7.95 -51.93 -0.41 0.56 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.07 1.83 4.66 -51.93 -0.24 1.59 16 44 H 0.02 0.49 6.93 -51.93 -0.36 0.13 16 45 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 46 H 0.06 1.22 7.92 -51.93 -0.41 0.81 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 49 H 0.06 0.73 8.10 -51.92 -0.42 0.31 16 LS Contribution 386.00 15.07 5.82 5.82 Total: -1.00 -35.29 386.00 -9.02 -44.31 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -7.56 Total: -2.40 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -2.09 Total: 5.78 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -0.41 Total: -57.55 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.60 Total: -14.61 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.18 Total: 18.66 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.29 -9.02 -44.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050775637.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.071 kcal (2) G-P(sol) polarization free energy of solvation -35.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds