Wall clock time and date at job start Wed Apr 1 2020 05:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.46753 * 2 1 4 4 C 1.35644 * 116.99812 * 180.02562 * 3 2 1 5 5 C 1.39345 * 120.54490 * 359.71637 * 4 3 2 6 6 C 1.38302 * 118.44024 * 179.76573 * 5 4 3 7 7 C 1.38764 * 119.44670 * 0.55499 * 6 5 4 8 8 N 1.31378 * 121.06340 * 359.68562 * 7 6 5 9 9 C 1.32858 * 121.69918 * 0.02562 * 8 7 6 10 10 C 1.47829 * 119.78224 * 179.97438 * 9 8 7 11 11 O 1.21554 * 119.99695 * 180.02562 * 10 9 8 12 12 N 1.34772 * 120.00236 * 0.02885 * 10 9 8 13 13 C 1.47167 * 135.99999 * 359.62840 * 12 10 9 14 14 C 1.52651 * 87.97167 * 206.72054 * 13 12 10 15 15 C 1.47165 * 136.00328 * 179.97438 * 12 10 9 16 16 C 1.52553 * 113.89373 * 88.16761 * 14 13 12 17 17 C 1.53354 * 109.12964 * 190.30610 * 16 14 13 18 18 N 1.46893 * 108.75003 * 307.76210 * 17 16 14 19 19 C 1.36934 * 120.46314 * 235.60091 * 18 17 16 20 20 H 1.07998 * 119.99945 * 149.72694 * 19 18 17 21 21 C 1.38815 * 119.99704 * 329.72583 * 19 18 17 22 22 N 1.31628 * 119.99718 * 158.00851 * 21 19 18 23 23 Si 1.86792 * 120.00432 * 338.00765 * 21 19 18 24 24 H 1.48500 * 109.47349 * 87.66656 * 23 21 19 25 25 H 1.48501 * 109.47585 * 207.66962 * 23 21 19 26 26 H 1.48501 * 109.47195 * 327.67121 * 23 21 19 27 27 C 1.46896 * 119.07316 * 55.62432 * 18 17 16 28 28 C 1.52545 * 114.26054 * 220.75940 * 14 13 12 29 29 H 1.08998 * 109.47578 * 60.00410 * 1 2 3 30 30 H 1.09000 * 109.46440 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46799 * 299.99725 * 1 2 3 32 32 H 1.09000 * 109.47435 * 240.00660 * 2 1 3 33 33 H 1.08998 * 109.47578 * 119.99590 * 2 1 3 34 34 H 1.08002 * 120.77482 * 0.02562 * 5 4 3 35 35 H 1.07999 * 120.27497 * 180.24071 * 6 5 4 36 36 H 1.07993 * 119.46915 * 179.70617 * 7 6 5 37 37 H 1.09003 * 113.48915 * 321.40944 * 13 12 10 38 38 H 1.09000 * 113.48996 * 91.91901 * 13 12 10 39 39 H 1.08994 * 113.49266 * 268.08463 * 15 12 10 40 40 H 1.08998 * 113.48506 * 38.53095 * 15 12 10 41 41 H 1.08996 * 109.53003 * 310.20613 * 16 14 13 42 42 H 1.09003 * 109.52522 * 70.41704 * 16 14 13 43 43 H 1.08996 * 109.59137 * 187.98180 * 17 16 14 44 44 H 1.09000 * 109.58823 * 67.54094 * 17 16 14 45 45 H 0.96997 * 120.00066 * 180.02562 * 22 21 19 46 46 H 1.08997 * 109.59083 * 184.58745 * 27 18 17 47 47 H 1.08995 * 109.59032 * 64.14482 * 27 18 17 48 48 H 1.09000 * 109.53272 * 289.75377 * 28 14 13 49 49 H 1.09010 * 109.52609 * 49.89483 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3510 1.5251 -0.0005 5 6 4.2104 0.4282 0.0049 6 6 5.5739 0.6597 -0.0009 7 6 6.0442 1.9652 -0.0001 8 7 5.2152 2.9844 -0.0001 9 6 3.8978 2.8127 -0.0004 10 6 3.0039 3.9901 0.0001 11 8 1.7979 3.8376 0.0003 12 7 3.5259 5.2326 0.0003 13 6 4.8785 5.8126 0.0068 14 6 4.2879 7.0452 0.6866 15 6 2.9936 6.6046 0.0004 16 6 4.2484 6.9520 2.2087 17 6 3.4124 8.1126 2.7618 18 7 3.9219 9.3709 2.2006 19 6 4.3154 10.3901 3.0260 20 1 5.0971 11.0667 2.7137 21 6 3.7095 10.5537 4.2642 22 7 4.3316 11.2118 5.2195 23 14 2.0115 9.8400 4.5747 24 1 2.1424 8.4379 5.0463 25 1 1.3167 10.6474 5.6095 26 1 1.2252 9.8672 3.3153 27 6 4.0030 9.5206 0.7415 28 6 4.8435 8.3702 0.1742 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.8207 -0.5790 0.0092 35 1 6.2667 -0.1687 -0.0009 36 1 7.1088 2.1463 0.0002 37 1 5.5821 5.2670 0.6356 38 1 5.2703 6.0123 -0.9906 39 1 2.8678 7.0219 -0.9987 40 1 2.1073 6.7266 0.6230 41 1 3.7972 6.0048 2.5042 42 1 5.2624 7.0127 2.6039 43 1 3.4948 8.1371 3.8483 44 1 2.3691 7.9806 2.4751 45 1 3.9084 11.3258 6.0848 46 1 4.4743 10.4727 0.4975 47 1 3.0008 9.4864 0.3144 48 1 5.8784 8.4810 0.4978 49 1 4.7985 8.3874 -0.9149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050775637.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:41 Heat of formation + Delta-G solvation = 13.688756 kcal Electronic energy + Delta-G solvation = -30953.861316 eV Core-core repulsion = 26882.919604 eV Total energy + Delta-G solvation = -4070.941712 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.24355 -41.51704 -39.45159 -39.21075 -37.71162 -34.39398 -33.51141 -33.07221 -32.28951 -31.99886 -31.03204 -28.79596 -27.29496 -25.99982 -25.57250 -24.53295 -24.41955 -23.18814 -22.64679 -20.98107 -19.70549 -19.24836 -18.54997 -18.27610 -17.91322 -17.38097 -17.26079 -16.84783 -16.67354 -16.05866 -15.89847 -15.50361 -15.37820 -15.25165 -15.08866 -14.75062 -14.52069 -14.35192 -14.23341 -13.89644 -13.61888 -13.58058 -13.52950 -13.33926 -13.26482 -13.20657 -12.87454 -12.55434 -12.33250 -12.22081 -12.11213 -11.88623 -11.68637 -11.53965 -11.39468 -11.23770 -11.06605 -10.84327 -10.65755 -10.44504 -9.80065 -9.43888 -8.85136 -8.17749 -5.47588 -0.37974 0.21280 1.27844 1.37919 1.46547 1.71507 1.78431 2.06872 2.40877 2.80795 3.04483 3.07024 3.29796 3.40407 3.53804 3.67222 3.79980 3.93410 3.97764 3.97885 4.05977 4.11422 4.15954 4.28729 4.36543 4.38068 4.48470 4.48867 4.61832 4.64588 4.73156 4.74123 4.81030 4.83528 4.85593 4.91251 4.98430 5.01100 5.03689 5.05955 5.17249 5.18990 5.23909 5.34819 5.44507 5.55905 5.92078 6.16269 6.21665 6.68849 6.71903 6.95689 7.13022 7.65073 8.08108 9.02429 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015274 B = 0.002844 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.777566 B = 9843.747006 C =10595.978796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.037 3.963 3 O -0.309 6.309 4 C 0.122 3.878 5 C -0.173 4.173 6 C -0.086 4.086 7 C 0.052 3.948 8 N -0.432 5.432 9 C 0.008 3.992 10 C 0.585 3.415 11 O -0.569 6.569 12 N -0.630 5.630 13 C 0.137 3.863 14 C -0.082 4.082 15 C 0.110 3.890 16 C -0.093 4.093 17 C 0.129 3.871 18 N -0.617 5.617 19 C -0.241 4.241 20 H 0.059 0.941 21 C -0.027 4.027 22 N -0.952 5.952 23 Si 0.931 3.069 24 H -0.280 1.280 25 H -0.308 1.308 26 H -0.270 1.270 27 C 0.140 3.860 28 C -0.101 4.101 29 H 0.054 0.946 30 H 0.109 0.891 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.177 0.823 35 H 0.189 0.811 36 H 0.197 0.803 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.046 0.954 44 H 0.019 0.981 45 H 0.261 0.739 46 H 0.063 0.937 47 H 0.032 0.968 48 H 0.070 0.930 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.357 -28.721 -16.270 33.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.037 4.037 3 O -0.221 6.221 4 C 0.071 3.929 5 C -0.199 4.199 6 C -0.105 4.105 7 C -0.111 4.111 8 N -0.143 5.143 9 C -0.128 4.128 10 C 0.375 3.625 11 O -0.448 6.448 12 N -0.363 5.363 13 C 0.015 3.985 14 C -0.083 4.083 15 C -0.012 4.012 16 C -0.132 4.132 17 C 0.004 3.996 18 N -0.341 5.341 19 C -0.371 4.371 20 H 0.077 0.923 21 C -0.222 4.222 22 N -0.598 5.598 23 Si 0.761 3.239 24 H -0.207 1.207 25 H -0.237 1.237 26 H -0.195 1.195 27 C 0.016 3.984 28 C -0.140 4.140 29 H 0.073 0.927 30 H 0.128 0.872 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.195 0.805 35 H 0.206 0.794 36 H 0.214 0.786 37 H 0.107 0.893 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.050 0.950 48 H 0.088 0.912 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.685 -27.933 -16.147 32.376 hybrid contribution -1.493 -0.721 0.912 1.893 sum 1.191 -28.654 -15.235 32.475 Atomic orbital electron populations 1.21791 0.92283 1.04124 1.02540 1.23263 0.96827 0.80506 1.03091 1.86402 1.17719 1.31478 1.86455 1.20262 0.84643 0.94255 0.93731 1.22152 0.94369 0.98870 1.04496 1.22745 0.95279 0.99641 0.92878 1.23457 1.01065 0.88078 0.98453 1.67675 1.01076 1.36975 1.08615 1.20303 0.90968 0.90425 1.11110 1.17683 0.86602 0.81707 0.76526 1.90781 1.15680 1.85500 1.52884 1.49443 1.12270 1.03723 1.70902 1.23055 0.84668 0.89173 1.01632 1.21579 0.96051 0.96115 0.94546 1.23203 0.97749 0.78976 1.01306 1.21479 1.00725 0.96794 0.94196 1.21256 0.95050 0.86433 0.96897 1.44477 1.75899 1.11239 1.02528 1.18887 1.13192 1.07502 0.97532 0.92330 1.25845 1.00664 0.99066 0.96626 1.69961 1.38553 1.47653 1.03634 0.86147 0.83612 0.77076 0.77037 1.20676 1.23660 1.19549 1.21186 0.97685 0.97844 0.81718 1.21731 0.99769 0.91708 1.00814 0.92681 0.87220 0.93062 0.89667 0.90062 0.80536 0.79386 0.78578 0.89273 0.87313 0.87364 0.92990 0.93105 0.91322 0.93594 0.96320 0.93025 0.91832 0.94973 0.91173 0.88146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 10.28 71.98 0.74 -1.43 16 2 C 0.04 0.55 5.48 71.98 0.39 0.95 16 3 O -0.31 -8.17 8.20 -68.60 -0.56 -8.73 16 4 C 0.12 2.92 6.71 22.94 0.15 3.07 16 5 C -0.17 -2.30 9.13 22.55 0.21 -2.10 16 6 C -0.09 -0.80 10.10 22.41 0.23 -0.57 16 7 C 0.05 0.71 11.17 84.89 0.95 1.66 16 8 N -0.43 -9.87 8.03 -184.63 -1.48 -11.36 16 9 C 0.01 0.23 6.76 41.93 0.28 0.51 16 10 C 0.58 20.54 8.05 86.78 0.70 21.24 16 11 O -0.57 -23.97 15.91 17.10 0.27 -23.70 16 12 N -0.63 -19.58 3.46 -862.01 -2.98 -22.57 16 13 C 0.14 3.39 6.61 83.21 0.55 3.94 16 14 C -0.08 -2.39 0.83 -52.60 -0.04 -2.44 16 15 C 0.11 3.31 7.56 83.32 0.63 3.94 16 16 C -0.09 -3.37 5.26 30.56 0.16 -3.21 16 17 C 0.13 5.77 4.14 86.42 0.36 6.13 16 18 N -0.62 -29.02 2.68 -698.64 -1.87 -30.89 16 19 C -0.24 -13.68 9.97 84.03 0.84 -12.84 16 20 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 21 C -0.03 -1.59 5.17 84.86 0.44 -1.15 16 22 N -0.95 -60.47 13.97 21.65 0.30 -60.17 16 23 Si 0.93 48.64 24.56 68.60 1.69 50.33 16 24 H -0.28 -14.13 6.44 99.48 0.64 -13.49 16 25 H -0.31 -16.20 7.11 99.48 0.71 -15.49 16 26 H -0.27 -13.85 7.11 99.48 0.71 -13.14 16 27 C 0.14 5.11 6.42 86.42 0.56 5.67 16 28 C -0.10 -2.78 5.31 30.56 0.16 -2.62 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 0.82 7.71 -2.39 -0.02 0.80 16 33 H 0.08 0.85 7.69 -2.39 -0.02 0.84 16 34 H 0.18 1.09 6.46 -2.91 -0.02 1.07 16 35 H 0.19 0.03 8.06 -2.91 -0.02 0.00 16 36 H 0.20 1.31 8.06 -2.91 -0.02 1.28 16 37 H 0.09 2.22 7.14 -2.39 -0.02 2.21 16 38 H 0.11 2.13 8.09 -2.39 -0.02 2.11 16 39 H 0.11 2.71 8.06 -2.39 -0.02 2.69 16 40 H 0.05 1.83 7.54 -2.39 -0.02 1.81 16 41 H 0.05 1.86 7.95 -2.39 -0.02 1.84 16 42 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.05 2.30 4.66 -2.39 -0.01 2.29 16 44 H 0.02 0.85 6.93 -2.39 -0.02 0.84 16 45 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 46 H 0.06 2.32 7.92 -2.39 -0.02 2.30 16 47 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.10 2.02 8.10 -2.38 -0.02 2.00 16 Total: -1.00 -83.11 386.00 3.54 -79.57 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 0.88 Total: 6.76 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 7.30 Total: 20.76 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -6.04 Total: -124.99 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.29 Total: -32.43 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 1.69 Total: 50.33 kcal Total: -83.11 3.54 -79.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050775637.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.261 kcal (2) G-P(sol) polarization free energy of solvation -83.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds