Wall clock time and date at job start Wed Apr 1 2020 05:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47318 * 2 1 4 4 C 1.35430 * 116.99976 * 180.02562 * 3 2 1 5 5 N 1.32241 * 119.79884 * 0.26824 * 4 3 2 6 6 C 1.31880 * 121.79832 * 180.24386 * 5 4 3 7 7 C 1.50700 * 119.40727 * 179.75845 * 6 5 4 8 8 C 1.38360 * 121.18777 * 359.48386 * 6 5 4 9 9 C 1.38343 * 119.45287 * 0.24985 * 8 6 5 10 10 C 1.39982 * 118.35080 * 0.02562 * 9 8 6 11 11 C 1.47529 * 120.59528 * 180.02562 * 10 9 8 12 12 O 1.21593 * 120.00171 * 172.66674 * 11 10 9 13 13 N 1.34778 * 119.99857 * 352.66007 * 11 10 9 14 14 C 1.47390 * 135.84882 * 182.82953 * 13 11 10 15 15 C 1.52076 * 87.40923 * 154.39142 * 14 13 11 16 16 C 1.47387 * 135.85388 * 3.20569 * 13 11 10 17 17 C 1.53512 * 117.20968 * 267.27809 * 15 14 13 18 18 C 1.54627 * 102.70073 * 262.92509 * 17 15 14 19 19 N 1.47144 * 107.38299 * 339.39007 * 18 17 15 20 20 C 1.36938 * 125.58434 * 179.04199 * 19 18 17 21 21 H 1.07991 * 120.00256 * 180.02562 * 20 19 18 22 22 C 1.38810 * 119.99615 * 0.02562 * 20 19 18 23 23 N 1.31621 * 120.00302 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99784 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47066 * 60.00013 * 24 22 20 26 26 H 1.48501 * 109.46706 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47040 * 299.99812 * 24 22 20 28 28 C 1.47757 * 108.83630 * 359.08223 * 19 18 17 29 29 H 1.08998 * 109.47092 * 59.99803 * 1 2 3 30 30 H 1.09000 * 109.47504 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46710 * 300.00202 * 1 2 3 32 32 H 1.09004 * 109.47223 * 239.99856 * 2 1 3 33 33 H 1.09003 * 109.47090 * 120.00676 * 2 1 3 34 34 H 1.09007 * 109.46900 * 269.72831 * 7 6 5 35 35 H 1.08997 * 109.47163 * 29.72868 * 7 6 5 36 36 H 1.09003 * 109.46933 * 149.73495 * 7 6 5 37 37 H 1.07991 * 120.27526 * 180.22989 * 8 6 5 38 38 H 1.08007 * 120.81969 * 179.97438 * 9 8 6 39 39 H 1.09008 * 113.54292 * 268.99626 * 14 13 11 40 40 H 1.08993 * 113.54760 * 39.67865 * 14 13 11 41 41 H 1.08999 * 113.54434 * 320.31980 * 16 13 11 42 42 H 1.08998 * 113.54876 * 90.92915 * 16 13 11 43 43 H 1.08995 * 110.76584 * 21.23536 * 17 15 14 44 44 H 1.09008 * 110.75955 * 144.62500 * 17 15 14 45 45 H 1.09010 * 109.86068 * 98.84192 * 18 17 15 46 46 H 1.09006 * 109.86546 * 219.93283 * 18 17 15 47 47 H 0.96998 * 120.00237 * 180.02562 * 23 22 20 48 48 H 1.08993 * 110.40844 * 263.50354 * 28 19 18 49 49 H 1.09005 * 110.40529 * 141.08132 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3490 1.5246 -0.0005 5 7 4.1508 0.4730 -0.0064 6 6 5.4635 0.6000 -0.0024 7 6 6.3264 -0.6354 -0.0039 8 6 6.0627 1.8472 -0.0024 9 6 5.2714 2.9820 -0.0016 10 6 3.8807 2.8227 -0.0001 11 6 2.9902 3.9989 0.0004 12 8 1.7904 3.8532 -0.1327 13 7 3.5066 5.2350 0.1485 14 6 2.9651 6.6021 0.2502 15 6 4.2259 6.9702 1.0167 16 6 4.8586 5.8085 0.2724 17 6 4.1711 6.8702 2.5476 18 6 3.8739 8.3267 2.9731 19 7 4.2657 9.1999 1.8553 20 6 4.1436 10.5635 1.8288 21 1 4.4609 11.1172 0.9576 22 6 3.6120 11.2341 2.9217 23 7 3.2248 10.5593 3.9833 24 14 3.4448 13.0943 2.8852 25 1 2.5629 13.4900 1.7578 26 1 2.8531 13.5632 4.1640 27 1 4.7847 13.7083 2.7046 28 6 4.8114 8.3642 0.7658 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 6.5356 -0.9338 1.0234 35 1 5.8043 -1.4427 -0.5175 36 1 7.2636 -0.4234 -0.5186 37 1 7.1391 1.9340 -0.0029 38 1 5.7158 3.9664 -0.0012 39 1 2.8768 7.1081 -0.7112 40 1 2.0559 6.6669 0.8477 41 1 5.5303 5.2107 0.8884 42 1 5.3010 6.0912 -0.6828 43 1 3.3682 6.2039 2.8628 44 1 5.1294 6.5386 2.9477 45 1 2.8096 8.4428 3.1784 46 1 4.4538 8.5789 3.8610 47 1 2.8530 11.0278 4.7469 48 1 5.8997 8.3344 0.8184 49 1 4.4872 8.7438 -0.2032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073095922.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:33 Heat of formation + Delta-G solvation = 42.009343 kcal Electronic energy + Delta-G solvation = -30479.868953 eV Core-core repulsion = 26410.155313 eV Total energy + Delta-G solvation = -4069.713640 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.26043 -40.38209 -38.34701 -37.99735 -35.67110 -33.51446 -32.55727 -32.10579 -31.13113 -29.64125 -28.84890 -27.93276 -26.27915 -25.73032 -23.97630 -23.84094 -22.94947 -22.34035 -20.34021 -19.85679 -18.66497 -18.22666 -17.20828 -16.97525 -16.70853 -16.52784 -15.64378 -15.46633 -14.92245 -14.80118 -14.61476 -14.44579 -14.21379 -13.97238 -13.61932 -13.56559 -13.17522 -12.97884 -12.83482 -12.65931 -12.53051 -12.35834 -12.24026 -12.13081 -11.92924 -11.79753 -11.65252 -11.00010 -10.92291 -10.88703 -10.64766 -10.44879 -10.23099 -10.15271 -10.11673 -10.09981 -9.78995 -9.70058 -9.42687 -8.72497 -8.59970 -8.44463 -6.84694 -5.71423 -3.05409 0.48097 1.02000 2.76742 2.84971 2.92019 3.40807 3.45173 3.46530 3.64644 3.80962 4.34540 4.41187 4.46593 4.61117 4.64183 4.81579 4.83711 4.92126 4.93974 5.00993 5.13683 5.18250 5.19752 5.28905 5.36593 5.46866 5.49540 5.50771 5.56416 5.62264 5.67308 5.67677 5.74633 5.82608 5.89372 5.93428 6.01206 6.14017 6.19975 6.20902 6.45419 6.51672 6.64811 6.67744 7.09097 7.53270 7.54727 7.61443 7.82103 7.86063 8.24575 8.30936 9.20964 9.81141 10.46394 11.40054 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018600 B = 0.002398 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.983570 B =11673.700472 C =12583.721767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.269 6.269 4 C 0.378 3.622 5 N -0.548 5.548 6 C 0.189 3.811 7 C -0.108 4.108 8 C -0.222 4.222 9 C -0.018 4.018 10 C -0.207 4.207 11 C 0.590 3.410 12 O -0.522 6.522 13 N -0.641 5.641 14 C 0.131 3.869 15 C -0.104 4.104 16 C 0.101 3.899 17 C -0.118 4.118 18 C 0.180 3.820 19 N -0.604 5.604 20 C -0.229 4.229 21 H 0.078 0.922 22 C -0.007 4.007 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.154 3.846 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.143 0.857 38 H 0.158 0.842 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.047 0.953 46 H 0.044 0.956 47 H 0.253 0.747 48 H 0.027 0.973 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.246 -22.990 -8.738 25.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.174 6.174 4 C 0.198 3.802 5 N -0.274 5.274 6 C 0.051 3.949 7 C -0.165 4.165 8 C -0.242 4.242 9 C -0.043 4.043 10 C -0.213 4.213 11 C 0.379 3.621 12 O -0.398 6.398 13 N -0.376 5.376 14 C 0.009 3.991 15 C -0.106 4.106 16 C -0.022 4.022 17 C -0.156 4.156 18 C 0.055 3.945 19 N -0.331 5.331 20 C -0.358 4.358 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.569 5.569 24 Si 0.742 3.258 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.027 3.973 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.161 0.839 38 H 0.175 0.825 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.044 0.956 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.756 -23.756 -8.682 25.736 hybrid contribution 0.390 1.560 0.041 1.608 sum 5.145 -22.196 -8.641 24.368 Atomic orbital electron populations 1.21790 0.92791 1.02492 1.03849 1.22679 0.95236 0.81280 1.02171 1.86544 1.15500 1.29806 1.85524 1.19750 0.84556 0.88281 0.87633 1.67286 1.06002 1.32427 1.21642 1.21178 0.88800 0.95377 0.89540 1.20814 0.97981 0.94129 1.03554 1.21759 1.01587 0.92202 1.08652 1.22310 0.91443 1.00873 0.89716 1.19955 0.94267 0.92037 1.15012 1.17241 0.87157 0.80747 0.76907 1.90828 1.14722 1.84782 1.49495 1.49643 1.10536 1.05093 1.72348 1.22792 0.98585 0.78059 0.99675 1.22206 0.95816 0.95605 0.96929 1.23081 0.86129 0.92790 1.00173 1.22473 1.00841 1.00758 0.91504 1.21221 0.99655 0.83178 0.90444 1.44522 1.73143 1.02308 1.13100 1.18989 1.35660 0.80463 1.00653 0.90437 1.24802 1.01114 0.98066 0.96389 1.69948 1.47513 1.33680 1.05747 0.86204 0.77744 0.85035 0.76784 1.21168 1.21647 1.21187 1.21142 0.95765 0.87450 0.92967 0.91462 0.90474 0.91440 0.91723 0.91706 0.89786 0.90262 0.90096 0.83933 0.82456 0.89663 0.90036 0.90008 0.89208 0.91995 0.91852 0.93491 0.93778 0.93676 0.95574 0.93915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 37.16 0.38 -1.04 16 2 C 0.06 0.69 6.03 37.16 0.22 0.91 16 3 O -0.27 -4.12 8.24 -39.62 -0.33 -4.45 16 4 C 0.38 5.50 7.50 -16.61 -0.12 5.37 16 5 N -0.55 -6.77 9.11 -9.21 -0.08 -6.85 16 6 C 0.19 1.83 6.78 -82.53 -0.56 1.27 16 7 C -0.11 -0.63 10.16 36.01 0.37 -0.26 16 8 C -0.22 -1.96 9.71 -39.50 -0.38 -2.35 16 9 C -0.02 -0.20 9.29 -38.89 -0.36 -0.56 16 10 C -0.21 -2.96 5.90 -104.69 -0.62 -3.58 16 11 C 0.59 9.99 8.00 -12.47 -0.10 9.89 16 12 O -0.52 -10.68 16.00 -16.36 -0.26 -10.95 16 13 N -0.64 -9.72 3.69 -186.96 -0.69 -10.41 16 14 C 0.13 2.12 7.98 -7.33 -0.06 2.06 16 15 C -0.10 -1.65 1.06 -155.21 -0.16 -1.82 16 16 C 0.10 1.23 5.90 -7.47 -0.04 1.19 16 17 C -0.12 -2.10 6.40 -25.61 -0.16 -2.27 16 18 C 0.18 4.22 5.39 -2.84 -0.02 4.20 16 19 N -0.60 -14.69 3.41 -170.53 -0.58 -15.28 16 20 C -0.23 -6.20 10.28 -15.06 -0.15 -6.35 16 21 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 22 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 23 N -0.92 -26.76 10.30 55.49 0.57 -26.19 16 24 Si 0.91 21.83 29.55 -169.99 -5.02 16.80 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 28 C 0.15 2.86 6.70 -3.22 -0.02 2.84 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 33 H 0.06 0.68 8.11 -51.93 -0.42 0.25 16 34 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.31 8.07 -51.93 -0.42 -0.11 16 37 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 38 H 0.16 1.41 3.97 -52.48 -0.21 1.20 16 39 H 0.09 1.29 8.06 -51.92 -0.42 0.87 16 40 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.08 0.84 6.18 -51.93 -0.32 0.52 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 44 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 45 H 0.05 1.25 7.38 -51.92 -0.38 0.86 16 46 H 0.04 1.15 7.49 -51.93 -0.39 0.76 16 47 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 48 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.04 0.77 8.00 -51.93 -0.42 0.35 16 LS Contribution 395.41 15.07 5.96 5.96 Total: -1.00 -34.25 395.41 -9.92 -44.17 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -7.59 Total: -2.03 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -1.89 Total: 9.22 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.78 Total: -58.73 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.59 Total: -15.39 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.25 -9.92 -44.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073095922.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.184 kcal (2) G-P(sol) polarization free energy of solvation -34.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds