Wall clock time and date at job start Wed Apr 1 2020 05:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47318 * 2 1 4 4 C 1.35430 * 116.99976 * 180.02562 * 3 2 1 5 5 N 1.32241 * 119.79884 * 0.26824 * 4 3 2 6 6 C 1.31880 * 121.79832 * 180.24386 * 5 4 3 7 7 C 1.50700 * 119.40727 * 179.75845 * 6 5 4 8 8 C 1.38360 * 121.18777 * 359.48386 * 6 5 4 9 9 C 1.38343 * 119.45287 * 0.24985 * 8 6 5 10 10 C 1.39982 * 118.35080 * 0.02562 * 9 8 6 11 11 C 1.47529 * 120.59528 * 180.02562 * 10 9 8 12 12 O 1.21593 * 120.00171 * 172.66674 * 11 10 9 13 13 N 1.34778 * 119.99857 * 352.66007 * 11 10 9 14 14 C 1.47390 * 135.84882 * 182.82953 * 13 11 10 15 15 C 1.52076 * 87.40923 * 154.39142 * 14 13 11 16 16 C 1.47387 * 135.85388 * 3.20569 * 13 11 10 17 17 C 1.53512 * 117.20968 * 267.27809 * 15 14 13 18 18 C 1.54627 * 102.70073 * 262.92509 * 17 15 14 19 19 N 1.47144 * 107.38299 * 339.39007 * 18 17 15 20 20 C 1.36938 * 125.58434 * 179.04199 * 19 18 17 21 21 H 1.07991 * 120.00256 * 180.02562 * 20 19 18 22 22 C 1.38810 * 119.99615 * 0.02562 * 20 19 18 23 23 N 1.31621 * 120.00302 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99784 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47066 * 60.00013 * 24 22 20 26 26 H 1.48501 * 109.46706 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47040 * 299.99812 * 24 22 20 28 28 C 1.47757 * 108.83630 * 359.08223 * 19 18 17 29 29 H 1.08998 * 109.47092 * 59.99803 * 1 2 3 30 30 H 1.09000 * 109.47504 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46710 * 300.00202 * 1 2 3 32 32 H 1.09004 * 109.47223 * 239.99856 * 2 1 3 33 33 H 1.09003 * 109.47090 * 120.00676 * 2 1 3 34 34 H 1.09007 * 109.46900 * 269.72831 * 7 6 5 35 35 H 1.08997 * 109.47163 * 29.72868 * 7 6 5 36 36 H 1.09003 * 109.46933 * 149.73495 * 7 6 5 37 37 H 1.07991 * 120.27526 * 180.22989 * 8 6 5 38 38 H 1.08007 * 120.81969 * 179.97438 * 9 8 6 39 39 H 1.09008 * 113.54292 * 268.99626 * 14 13 11 40 40 H 1.08993 * 113.54760 * 39.67865 * 14 13 11 41 41 H 1.08999 * 113.54434 * 320.31980 * 16 13 11 42 42 H 1.08998 * 113.54876 * 90.92915 * 16 13 11 43 43 H 1.08995 * 110.76584 * 21.23536 * 17 15 14 44 44 H 1.09008 * 110.75955 * 144.62500 * 17 15 14 45 45 H 1.09010 * 109.86068 * 98.84192 * 18 17 15 46 46 H 1.09006 * 109.86546 * 219.93283 * 18 17 15 47 47 H 0.96998 * 120.00237 * 180.02562 * 23 22 20 48 48 H 1.08993 * 110.40844 * 263.50354 * 28 19 18 49 49 H 1.09005 * 110.40529 * 141.08132 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3490 1.5246 -0.0005 5 7 4.1508 0.4730 -0.0064 6 6 5.4635 0.6000 -0.0024 7 6 6.3264 -0.6354 -0.0039 8 6 6.0627 1.8472 -0.0024 9 6 5.2714 2.9820 -0.0016 10 6 3.8807 2.8227 -0.0001 11 6 2.9902 3.9989 0.0004 12 8 1.7904 3.8532 -0.1327 13 7 3.5066 5.2350 0.1485 14 6 2.9651 6.6021 0.2502 15 6 4.2259 6.9702 1.0167 16 6 4.8586 5.8085 0.2724 17 6 4.1711 6.8702 2.5476 18 6 3.8739 8.3267 2.9731 19 7 4.2657 9.1999 1.8553 20 6 4.1436 10.5635 1.8288 21 1 4.4609 11.1172 0.9576 22 6 3.6120 11.2341 2.9217 23 7 3.2248 10.5593 3.9833 24 14 3.4448 13.0943 2.8852 25 1 2.5629 13.4900 1.7578 26 1 2.8531 13.5632 4.1640 27 1 4.7847 13.7083 2.7046 28 6 4.8114 8.3642 0.7658 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 6.5356 -0.9338 1.0234 35 1 5.8043 -1.4427 -0.5175 36 1 7.2636 -0.4234 -0.5186 37 1 7.1391 1.9340 -0.0029 38 1 5.7158 3.9664 -0.0012 39 1 2.8768 7.1081 -0.7112 40 1 2.0559 6.6669 0.8477 41 1 5.5303 5.2107 0.8884 42 1 5.3010 6.0912 -0.6828 43 1 3.3682 6.2039 2.8628 44 1 5.1294 6.5386 2.9477 45 1 2.8096 8.4428 3.1784 46 1 4.4538 8.5789 3.8610 47 1 2.8530 11.0278 4.7469 48 1 5.8997 8.3344 0.8184 49 1 4.4872 8.7438 -0.2032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073095922.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:31 Heat of formation + Delta-G solvation = 19.263201 kcal Electronic energy + Delta-G solvation = -30480.855300 eV Core-core repulsion = 26410.155313 eV Total energy + Delta-G solvation = -4070.699986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.30177 -41.49795 -39.34109 -39.23362 -37.30977 -34.48786 -33.93714 -33.29004 -31.91494 -31.23966 -30.33187 -28.87415 -27.40348 -27.29867 -25.53742 -24.78360 -23.86486 -23.18479 -22.14036 -21.03644 -19.91591 -19.27090 -18.62258 -18.24232 -17.94688 -17.46437 -16.84175 -16.69931 -16.61166 -16.10279 -15.71359 -15.48184 -15.35870 -15.06581 -14.80513 -14.72536 -14.25479 -13.96845 -13.84122 -13.74196 -13.65715 -13.50233 -13.30769 -13.30445 -13.01979 -12.86497 -12.84531 -12.72297 -12.49710 -12.21177 -12.07232 -11.91307 -11.81817 -11.71197 -11.67274 -11.21730 -11.14082 -10.96994 -10.65718 -10.55589 -9.82792 -9.43187 -8.83985 -7.80600 -5.15253 -0.39077 0.21387 1.48260 1.51289 1.57180 1.68213 1.78612 1.97533 2.52852 2.71627 3.02870 3.25499 3.39596 3.42178 3.61956 3.67110 3.84507 3.85912 4.00783 4.06458 4.09751 4.15924 4.20278 4.24745 4.36133 4.43331 4.47025 4.61533 4.65488 4.72392 4.75012 4.77531 4.82644 4.85958 4.86592 4.94167 4.95780 5.00707 5.05552 5.15392 5.17917 5.18098 5.24590 5.49597 5.51105 5.68935 5.80454 6.21557 6.23431 6.64289 6.74566 7.08287 7.14080 7.82757 8.46588 9.29775 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018600 B = 0.002398 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.983570 B =11673.700472 C =12583.721767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 O -0.303 6.303 4 C 0.355 3.645 5 N -0.559 5.559 6 C 0.183 3.817 7 C -0.105 4.105 8 C -0.208 4.208 9 C -0.012 4.012 10 C -0.236 4.236 11 C 0.584 3.416 12 O -0.575 6.575 13 N -0.640 5.640 14 C 0.123 3.877 15 C -0.097 4.097 16 C 0.118 3.882 17 C -0.102 4.102 18 C 0.189 3.811 19 N -0.627 5.627 20 C -0.234 4.234 21 H 0.089 0.911 22 C -0.071 4.071 23 N -0.955 5.955 24 Si 0.976 3.024 25 H -0.279 1.279 26 H -0.300 1.300 27 H -0.274 1.274 28 C 0.152 3.848 29 H 0.056 0.944 30 H 0.108 0.892 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.187 0.813 38 H 0.180 0.820 39 H 0.099 0.901 40 H 0.048 0.952 41 H 0.113 0.887 42 H 0.129 0.871 43 H 0.056 0.944 44 H 0.090 0.910 45 H 0.000 1.000 46 H 0.009 0.991 47 H 0.244 0.756 48 H 0.051 0.949 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.102 -24.572 -10.555 28.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 O -0.208 6.208 4 C 0.175 3.825 5 N -0.285 5.285 6 C 0.045 3.955 7 C -0.162 4.162 8 C -0.227 4.227 9 C -0.037 4.037 10 C -0.242 4.242 11 C 0.376 3.624 12 O -0.456 6.456 13 N -0.374 5.374 14 C 0.000 4.000 15 C -0.098 4.098 16 C -0.003 4.003 17 C -0.140 4.140 18 C 0.064 3.936 19 N -0.353 5.353 20 C -0.363 4.363 21 H 0.106 0.894 22 C -0.264 4.264 23 N -0.605 5.605 24 Si 0.804 3.196 25 H -0.205 1.205 26 H -0.227 1.227 27 H -0.200 1.200 28 C 0.027 3.973 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.128 0.872 37 H 0.204 0.796 38 H 0.197 0.803 39 H 0.117 0.883 40 H 0.066 0.934 41 H 0.131 0.869 42 H 0.146 0.854 43 H 0.075 0.925 44 H 0.109 0.891 45 H 0.018 0.982 46 H 0.027 0.973 47 H 0.053 0.947 48 H 0.069 0.931 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.671 -25.347 -10.540 28.788 hybrid contribution -0.744 1.972 0.578 2.186 sum 7.927 -23.375 -9.961 26.617 Atomic orbital electron populations 1.21816 0.91832 1.04130 1.02678 1.22850 0.96024 0.80168 1.02542 1.86513 1.16673 1.31735 1.85896 1.19997 0.84580 0.89108 0.88786 1.67364 1.07294 1.31708 1.22174 1.22011 0.88213 0.97591 0.87651 1.20958 0.98284 0.92249 1.04699 1.22240 1.03492 0.90880 1.06110 1.22557 0.89747 1.02650 0.88760 1.19902 0.95543 0.90693 1.18111 1.17753 0.86989 0.81691 0.75965 1.90787 1.17084 1.85594 1.52087 1.49634 1.11922 1.04193 1.71674 1.22829 0.97633 0.79526 1.00002 1.22016 0.96380 0.95940 0.95479 1.23259 0.84956 0.90299 1.01792 1.22262 1.01919 0.96454 0.93355 1.20897 0.96183 0.86785 0.89765 1.44826 1.73350 1.02218 1.14933 1.19451 1.34123 0.82187 1.00559 0.89372 1.25644 1.01929 1.02332 0.96468 1.70193 1.49081 1.34913 1.06266 0.85186 0.77996 0.80153 0.76220 1.20495 1.22689 1.19955 1.21368 0.96798 0.87634 0.91527 0.92472 0.87362 0.92687 0.91133 0.91340 0.88502 0.90540 0.87163 0.79594 0.80335 0.88272 0.93354 0.86913 0.85361 0.92546 0.89126 0.98169 0.97318 0.94704 0.93097 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 10.28 71.98 0.74 -2.12 16 2 C 0.06 1.36 6.03 71.98 0.43 1.79 16 3 O -0.30 -9.73 8.24 -66.56 -0.55 -10.28 16 4 C 0.36 10.33 7.50 85.13 0.64 10.97 16 5 N -0.56 -13.08 9.11 -296.05 -2.70 -15.78 16 6 C 0.18 2.92 6.78 42.58 0.29 3.21 16 7 C -0.11 -0.79 10.16 71.24 0.72 -0.06 16 8 C -0.21 -2.66 9.71 22.32 0.22 -2.44 16 9 C -0.01 -0.22 9.29 22.72 0.21 -0.01 16 10 C -0.24 -6.54 5.90 -19.91 -0.12 -6.66 16 11 C 0.58 19.93 8.00 86.69 0.69 20.62 16 12 O -0.57 -24.87 16.00 16.68 0.27 -24.61 16 13 N -0.64 -18.56 3.69 -863.66 -3.19 -21.75 16 14 C 0.12 3.95 7.98 83.77 0.67 4.62 16 15 C -0.10 -2.87 1.06 -52.62 -0.06 -2.93 16 16 C 0.12 2.36 5.90 83.67 0.49 2.86 16 17 C -0.10 -3.58 6.40 31.32 0.20 -3.38 16 18 C 0.19 9.22 5.39 86.81 0.47 9.69 16 19 N -0.63 -30.57 3.41 -693.45 -2.36 -32.94 16 20 C -0.23 -12.69 10.28 84.03 0.86 -11.83 16 21 H 0.09 4.47 7.83 -2.91 -0.02 4.45 16 22 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 23 N -0.95 -58.05 10.30 21.65 0.22 -57.83 16 24 Si 0.98 45.65 29.55 68.60 2.03 47.67 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 27 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 28 C 0.15 5.28 6.70 86.23 0.58 5.85 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.48 8.10 -2.38 -0.02 1.46 16 33 H 0.07 1.46 8.11 -2.39 -0.02 1.44 16 34 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.11 0.22 8.07 -2.39 -0.02 0.20 16 37 H 0.19 0.77 8.06 -2.92 -0.02 0.74 16 38 H 0.18 2.19 3.97 -2.91 -0.01 2.18 16 39 H 0.10 2.90 8.06 -2.38 -0.02 2.88 16 40 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.11 1.65 6.18 -2.39 -0.01 1.63 16 42 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 44 H 0.09 2.71 8.14 -2.38 -0.02 2.69 16 45 H 0.00 0.00 7.38 -2.38 -0.02 -0.02 16 46 H 0.01 0.47 7.49 -2.38 -0.02 0.45 16 47 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 48 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.05 1.77 8.00 -2.38 -0.02 1.75 16 Total: -1.00 -82.44 395.41 2.18 -80.26 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 0.95 Total: 8.64 kcal Atomic # 6 Polarization: 19.09 SS G_CDS: 7.51 Total: 26.60 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -8.03 Total: -128.29 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -0.28 Total: -34.88 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -82.44 2.18 -80.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073095922.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.527 kcal (2) G-P(sol) polarization free energy of solvation -82.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds