Wall clock time and date at job start Wed Apr 1 2020 05:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.46992 * 2 1 4 4 C 1.35687 * 116.99910 * 179.97438 * 3 2 1 5 5 C 1.38888 * 119.62252 * 180.02562 * 4 3 2 6 6 C 1.39573 * 118.94718 * 180.02562 * 5 4 3 7 7 C 1.48160 * 120.89377 * 180.02562 * 6 5 4 8 8 O 1.21515 * 119.99748 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00171 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99958 * 179.97438 * 9 7 6 11 11 H 1.09002 * 112.88866 * 333.16141 * 10 9 7 12 12 C 1.53950 * 113.66180 * 104.51120 * 10 9 7 13 13 C 1.53950 * 87.29592 * 89.83075 * 12 10 9 14 14 H 1.09006 * 113.65941 * 270.17111 * 13 12 10 15 15 N 1.46499 * 113.66414 * 139.20642 * 13 12 10 16 16 C 1.36939 * 119.99933 * 104.77943 * 15 13 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 13 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 13 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47144 * 90.00258 * 20 18 16 22 22 H 1.48500 * 109.47140 * 210.00775 * 20 18 16 23 23 H 1.48502 * 109.46967 * 330.00206 * 20 18 16 24 24 C 1.52914 * 86.78449 * 24.73365 * 13 12 10 25 25 C 1.52907 * 121.14350 * 209.38294 * 24 13 12 26 26 C 1.53946 * 86.78434 * 209.37620 * 25 24 13 27 27 C 1.52906 * 121.13637 * 100.81404 * 24 13 12 28 28 C 1.39969 * 118.21740 * 0.26469 * 6 5 4 29 29 C 1.37983 * 119.13108 * 359.44589 * 28 6 5 30 30 N 1.31914 * 120.97655 * 0.57407 * 29 28 6 31 31 H 1.09005 * 109.47231 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47452 * 300.00065 * 1 2 3 33 33 H 1.09000 * 109.47284 * 60.00109 * 1 2 3 34 34 H 1.09002 * 109.47452 * 239.99935 * 2 1 3 35 35 H 1.09000 * 109.47284 * 119.99891 * 2 1 3 36 36 H 1.07998 * 120.52955 * 359.97309 * 5 4 3 37 37 H 0.96997 * 119.99904 * 0.02562 * 9 7 6 38 38 H 1.08998 * 113.57862 * 335.22777 * 12 10 9 39 39 H 1.08999 * 113.64870 * 204.44070 * 12 10 9 40 40 H 0.97001 * 119.99790 * 284.49917 * 15 13 12 41 41 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 42 42 H 1.09001 * 113.66043 * 323.84687 * 25 24 13 43 43 H 1.09000 * 113.66310 * 94.90448 * 25 24 13 44 44 H 1.09000 * 113.58131 * 270.13296 * 26 25 24 45 45 H 1.08999 * 113.65580 * 139.34498 * 26 25 24 46 46 H 1.08996 * 113.66552 * 265.09839 * 27 24 13 47 47 H 1.09001 * 113.66060 * 36.16135 * 27 24 13 48 48 H 1.07995 * 120.43918 * 179.73243 * 28 6 5 49 49 H 1.08001 * 119.51408 * 180.27441 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3515 1.5251 0.0005 5 6 3.8738 2.8120 0.0011 6 6 5.2596 2.9786 0.0011 7 6 5.8632 4.3316 0.0023 8 8 5.1496 5.3152 0.0028 9 7 7.2037 4.4716 0.0028 10 6 7.8004 5.8096 0.0034 11 1 7.1549 6.5619 -0.4500 12 6 8.3743 6.2295 1.3688 13 6 9.7057 5.5994 0.9211 14 1 9.7992 4.5446 1.1796 15 7 10.8838 6.3848 1.2972 16 6 11.6770 5.9749 2.3354 17 1 11.4316 5.0750 2.8798 18 6 12.7966 6.7160 2.6881 19 7 13.0953 7.8129 2.0248 20 14 13.8782 6.1572 4.1048 21 1 14.9423 5.2582 3.5904 22 1 14.4998 7.3415 4.7499 23 1 13.0523 5.4278 5.1003 24 6 9.2388 5.8425 -0.5146 25 6 9.6887 4.9316 -1.6574 26 6 9.5447 6.1583 -2.5763 27 6 9.7602 7.0295 -1.3253 28 6 6.0638 1.8330 -0.0052 29 6 5.4634 0.5907 0.0006 30 7 4.1497 0.4716 0.0005 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.2182 3.6702 0.0007 37 1 7.7733 3.6865 0.0020 38 1 7.9115 5.7175 2.2124 39 1 8.4278 7.3094 1.5071 40 1 11.1041 7.1930 0.8081 41 1 13.8775 8.3309 2.2715 42 1 10.7149 4.5782 -1.5570 43 1 8.9837 4.1313 -1.8824 44 1 8.5516 6.2614 -3.0136 45 1 10.3426 6.2487 -3.3133 46 1 9.1123 7.9051 -1.2851 47 1 10.8065 7.2656 -1.1317 48 1 7.1403 1.9203 -0.0097 49 1 6.0781 -0.2973 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078722504.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:17 Heat of formation + Delta-G solvation = 0.273303 kcal Electronic energy + Delta-G solvation = -29797.076990 eV Core-core repulsion = 25725.553540 eV Total energy + Delta-G solvation = -4071.523450 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.20293 -41.62073 -40.18837 -38.84384 -36.45862 -35.81189 -34.29728 -33.44631 -32.98065 -31.61908 -30.85577 -27.01399 -26.72741 -26.00318 -25.34219 -24.45357 -24.20957 -23.39867 -22.04905 -21.40909 -20.09177 -19.38791 -18.82341 -18.39312 -17.37265 -17.32505 -17.17515 -16.76969 -16.65443 -16.35400 -16.04851 -15.88151 -15.54790 -15.19892 -14.98093 -14.86418 -14.82183 -14.27484 -13.89211 -13.52242 -13.45507 -13.36275 -13.29237 -13.16755 -13.02047 -12.82729 -12.72397 -12.58578 -12.48433 -12.14205 -12.01548 -11.81600 -11.73865 -11.50437 -11.32603 -11.13017 -11.09914 -10.84783 -10.73650 -10.64934 -10.06111 -9.61855 -8.93170 -7.92082 -5.19226 -0.44597 0.05983 1.48836 1.49738 1.57792 1.67227 1.72282 2.12066 2.57976 2.72760 3.22976 3.38560 3.40357 3.43342 3.66014 3.76213 3.85768 3.93023 3.94097 4.00345 4.02173 4.09377 4.16937 4.17832 4.31283 4.45821 4.55191 4.59185 4.63409 4.68870 4.75216 4.82579 4.84511 4.95150 4.95255 4.97666 4.98910 5.09505 5.12467 5.13379 5.18951 5.21705 5.31424 5.49990 5.52352 5.62300 5.67100 6.17288 6.30061 6.39397 6.69737 7.02173 7.37233 8.15143 8.37798 9.31006 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015994 B = 0.002210 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.184471 B =12667.517880 C =13513.415224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.321 6.321 4 C 0.310 3.690 5 C -0.151 4.151 6 C -0.058 4.058 7 C 0.562 3.438 8 O -0.568 6.568 9 N -0.679 5.679 10 C 0.162 3.838 11 H 0.091 0.909 12 C -0.174 4.174 13 C 0.167 3.833 14 H 0.083 0.917 15 N -0.721 5.721 16 C -0.238 4.238 17 H 0.077 0.923 18 C -0.076 4.076 19 N -0.968 5.968 20 Si 0.969 3.031 21 H -0.286 1.286 22 H -0.301 1.301 23 H -0.271 1.271 24 C -0.112 4.112 25 C -0.114 4.114 26 C -0.127 4.127 27 C -0.115 4.115 28 C -0.168 4.168 29 C 0.144 3.856 30 N -0.534 5.534 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.140 0.860 37 H 0.416 0.584 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.377 0.623 41 H 0.249 0.751 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.174 0.826 49 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.189 -18.314 -9.150 28.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.228 6.228 4 C 0.132 3.868 5 C -0.173 4.173 6 C -0.069 4.069 7 C 0.349 3.651 8 O -0.447 6.447 9 N -0.330 5.330 10 C 0.056 3.944 11 H 0.109 0.891 12 C -0.216 4.216 13 C 0.057 3.943 14 H 0.101 0.899 15 N -0.359 5.359 16 C -0.370 4.370 17 H 0.095 0.905 18 C -0.268 4.268 19 N -0.619 5.619 20 Si 0.798 3.202 21 H -0.214 1.214 22 H -0.228 1.228 23 H -0.196 1.196 24 C -0.114 4.114 25 C -0.152 4.152 26 C -0.164 4.164 27 C -0.153 4.153 28 C -0.189 4.189 29 C -0.011 4.011 30 N -0.259 5.259 31 H 0.120 0.880 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.158 0.842 37 H 0.254 0.746 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.210 0.790 41 H 0.058 0.942 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.191 0.809 49 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -20.209 -18.350 -8.990 28.739 hybrid contribution 1.476 1.087 0.931 2.055 sum -18.733 -17.263 -8.059 26.719 Atomic orbital electron populations 1.21854 0.91331 1.04311 1.03218 1.22838 0.96098 0.79704 1.02640 1.86248 1.16435 1.32539 1.87611 1.19665 0.84686 0.89436 0.93043 1.21089 0.94971 0.96500 1.04741 1.19999 0.93325 0.93437 1.00102 1.18345 0.82389 0.88431 0.75943 1.90776 1.61965 1.40970 1.50966 1.45312 1.05598 1.09129 1.72988 1.21211 0.92243 0.84374 0.96597 0.89139 1.24165 0.99825 1.01026 0.96574 1.21709 0.85009 0.94823 0.92762 0.89916 1.42530 1.27546 1.28500 1.37300 1.19672 1.03559 1.06283 1.07507 0.90476 1.25506 1.00718 0.98065 1.02513 1.69810 1.29207 1.18334 1.44540 0.85207 0.78982 0.76557 0.79419 1.21362 1.22761 1.19621 1.23217 0.93771 0.99762 0.94683 1.22615 1.01679 0.96678 0.94193 1.22782 1.02237 0.95681 0.95721 1.22468 1.00753 0.96059 0.96061 1.22521 1.02616 0.91702 1.02026 1.23087 0.88441 0.98529 0.91072 1.67311 1.07860 1.32865 1.17862 0.88020 0.91858 0.91734 0.91311 0.91486 0.84179 0.74555 0.92424 0.91353 0.78997 0.94205 0.90328 0.89475 0.89467 0.90901 0.91762 0.91114 0.80903 0.77697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 71.98 0.74 -0.75 16 2 C 0.06 0.91 6.03 71.98 0.43 1.34 16 3 O -0.32 -6.76 10.11 -90.06 -0.91 -7.67 16 4 C 0.31 6.74 7.49 84.80 0.63 7.37 16 5 C -0.15 -3.52 9.61 22.75 0.22 -3.30 16 6 C -0.06 -1.22 5.91 -19.90 -0.12 -1.34 16 7 C 0.56 14.59 7.80 86.88 0.68 15.27 16 8 O -0.57 -19.42 16.08 -3.76 -0.06 -19.48 16 9 N -0.68 -15.37 4.83 -443.72 -2.14 -17.52 16 10 C 0.16 4.57 4.07 45.28 0.18 4.75 16 11 H 0.09 2.78 7.54 -2.39 -0.02 2.77 16 12 C -0.17 -5.98 7.68 31.23 0.24 -5.74 16 13 C 0.17 6.02 4.28 45.28 0.19 6.21 16 14 H 0.08 2.81 8.12 -2.38 -0.02 2.79 16 15 N -0.72 -34.33 5.34 -321.55 -1.72 -36.05 16 16 C -0.24 -12.67 9.98 84.03 0.84 -11.83 16 17 H 0.08 3.91 7.83 -2.91 -0.02 3.88 16 18 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 19 N -0.97 -58.06 13.06 21.65 0.28 -57.77 16 20 Si 0.97 45.23 29.55 68.60 2.03 47.26 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 22 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 C -0.11 -3.23 0.91 -52.31 -0.05 -3.28 16 25 C -0.11 -2.68 7.60 30.88 0.23 -2.45 16 26 C -0.13 -2.98 8.08 31.23 0.25 -2.72 16 27 C -0.12 -3.49 7.16 30.89 0.22 -3.27 16 28 C -0.17 -2.32 9.61 22.63 0.22 -2.10 16 29 C 0.14 1.86 11.17 84.62 0.94 2.80 16 30 N -0.53 -9.85 9.18 -309.13 -2.84 -12.69 16 31 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.95 8.10 -2.39 -0.02 0.93 16 35 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 36 H 0.14 3.53 7.74 -2.91 -0.02 3.51 16 37 H 0.42 6.94 6.42 -92.71 -0.60 6.35 16 38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.07 2.62 8.14 -2.39 -0.02 2.61 16 40 H 0.38 19.40 6.12 -92.71 -0.57 18.83 16 41 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 42 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.09 1.57 7.51 -2.39 -0.02 1.55 16 44 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.07 2.57 6.96 -2.39 -0.02 2.55 16 48 H 0.17 1.29 6.53 -2.91 -0.02 1.27 16 49 H 0.21 0.99 8.06 -2.91 -0.02 0.96 16 Total: -1.00 -70.99 403.25 0.79 -70.20 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: -0.19 Total: 36.55 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 6.33 Total: -2.82 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -6.41 Total: -124.03 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.97 Total: -27.16 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -70.99 0.79 -70.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078722504.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.476 kcal (2) G-P(sol) polarization free energy of solvation -70.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds