Wall clock time and date at job start Wed Apr 1 2020 05:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47202 * 2 1 4 4 C 1.35686 * 116.99934 * 179.97438 * 3 2 1 5 5 C 1.38899 * 119.62294 * 179.97438 * 4 3 2 6 6 C 1.39559 * 118.94801 * 180.02562 * 5 4 3 7 7 C 1.48168 * 120.89273 * 180.02562 * 6 5 4 8 8 O 1.21513 * 119.99988 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00056 * 179.71945 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27160 * 9 7 6 11 11 H 1.09000 * 112.88483 * 26.84185 * 10 9 7 12 12 C 1.53949 * 113.66436 * 255.50300 * 10 9 7 13 13 C 1.53957 * 87.29199 * 270.25891 * 12 10 9 14 14 H 1.08997 * 113.66143 * 220.79319 * 13 12 10 15 15 N 1.46501 * 113.66278 * 89.73771 * 13 12 10 16 16 C 1.36934 * 119.99904 * 104.50264 * 15 13 12 17 17 H 1.07992 * 120.00425 * 0.02562 * 16 15 13 18 18 C 1.38816 * 119.99750 * 180.02562 * 16 15 13 19 19 N 1.31614 * 120.00306 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00054 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47043 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47444 * 119.99316 * 20 18 16 23 23 H 1.48495 * 109.47004 * 240.00084 * 20 18 16 24 24 C 1.52904 * 113.66429 * 158.31034 * 10 9 7 25 25 C 1.52910 * 121.14104 * 323.85473 * 24 10 9 26 26 C 1.53953 * 86.78351 * 209.37536 * 25 24 10 27 27 C 1.52910 * 121.13887 * 215.29190 * 24 10 9 28 28 C 1.39966 * 118.21771 * 0.26900 * 6 5 4 29 29 C 1.37983 * 119.13205 * 359.45931 * 28 6 5 30 30 N 1.31910 * 120.97464 * 0.55979 * 29 28 6 31 31 H 1.09007 * 109.47044 * 299.99959 * 1 2 3 32 32 H 1.08992 * 109.47092 * 59.99767 * 1 2 3 33 33 H 1.08996 * 109.46894 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47197 * 239.99765 * 2 1 3 35 35 H 1.09000 * 109.46941 * 119.99951 * 2 1 3 36 36 H 1.08008 * 120.52454 * 0.02562 * 5 4 3 37 37 H 0.97001 * 119.99727 * 0.28056 * 9 7 6 38 38 H 1.08994 * 113.58115 * 24.86016 * 12 10 9 39 39 H 1.09000 * 113.58114 * 155.66428 * 12 10 9 40 40 H 0.97003 * 120.00205 * 284.50935 * 15 13 12 41 41 H 0.96996 * 120.00313 * 179.97438 * 19 18 16 42 42 H 1.09001 * 113.66279 * 323.84881 * 25 24 10 43 43 H 1.09001 * 113.66406 * 94.90570 * 25 24 10 44 44 H 1.08998 * 113.57982 * 270.13272 * 26 25 24 45 45 H 1.09002 * 113.57703 * 139.33584 * 26 25 24 46 46 H 1.09005 * 113.66008 * 265.09718 * 27 24 10 47 47 H 1.08997 * 113.66591 * 36.14971 * 27 24 10 48 48 H 1.08006 * 120.43787 * 179.70604 * 28 6 5 49 49 H 1.08000 * 119.50897 * 180.29107 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3515 1.5250 0.0005 5 6 3.8740 2.8120 0.0000 6 6 5.2596 2.9785 0.0000 7 6 5.8632 4.3317 0.0001 8 8 5.1497 5.3152 -0.0004 9 7 7.2037 4.4716 0.0058 10 6 7.8005 5.8095 0.0119 11 1 7.1531 6.5604 0.4648 12 6 8.3800 6.2338 -1.3498 13 6 9.7089 5.6000 -0.8995 14 1 10.5873 6.1842 -1.1738 15 7 9.8330 4.1829 -1.2498 16 6 10.6379 3.8029 -2.2904 17 1 11.1815 4.5477 -2.8526 18 6 10.7551 2.4602 -2.6227 19 7 10.0930 1.5524 -1.9373 20 14 11.8536 1.9416 -4.0417 21 1 12.4832 3.1436 -4.6453 22 1 12.9111 1.0274 -3.5407 23 1 11.0396 1.2418 -5.0678 24 6 9.2369 5.8384 0.5353 25 6 9.6813 4.9226 1.6763 26 6 10.6981 6.0185 2.0441 27 6 9.7571 7.0216 1.3524 28 6 6.0638 1.8330 -0.0052 29 6 5.4634 0.5907 0.0012 30 7 4.1497 0.4716 0.0011 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.2183 3.6703 -0.0004 37 1 7.7733 3.6864 0.0058 38 1 7.9197 5.7256 -2.1970 39 1 8.4353 7.3142 -1.4826 40 1 9.3450 3.5139 -0.7447 41 1 10.1746 0.6142 -2.1697 42 1 8.9145 4.7650 2.4347 43 1 10.1419 3.9943 1.3382 44 1 11.6600 5.9066 1.5437 45 1 10.7951 6.1807 3.1176 46 1 10.2781 7.7702 0.7554 47 1 9.0115 7.4539 2.0198 48 1 7.1404 1.9202 -0.0101 49 1 6.0781 -0.2973 0.0020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078722506.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:27 Heat of formation + Delta-G solvation = 23.130342 kcal Electronic energy + Delta-G solvation = -30690.029856 eV Core-core repulsion = 26619.497561 eV Total energy + Delta-G solvation = -4070.532295 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.93951 -40.43722 -38.89093 -37.71578 -35.31847 -33.79696 -32.89390 -32.27689 -31.83494 -30.00979 -29.72062 -25.74350 -25.36176 -24.36581 -24.20713 -23.30025 -23.14897 -22.16134 -20.65388 -20.10086 -19.00677 -17.79119 -17.23172 -17.06996 -16.37837 -16.23456 -15.73794 -15.52998 -15.21524 -14.84845 -14.73223 -14.41009 -14.28537 -13.96584 -13.82043 -13.76814 -13.24804 -12.99400 -12.79339 -12.63166 -12.40200 -12.15273 -11.95356 -11.93109 -11.64220 -11.55992 -11.39053 -10.98533 -10.92608 -10.88476 -10.75518 -10.21981 -10.17883 -10.09894 -9.87154 -9.79321 -9.78860 -9.53795 -9.45881 -8.95189 -8.58664 -8.51194 -7.12819 -5.94148 -3.21784 0.76931 1.19390 2.81960 3.03504 3.34854 3.35693 3.42759 3.43489 3.90574 4.28516 4.42686 4.66553 4.71614 4.83454 4.86740 4.94210 4.96568 5.04022 5.08030 5.11200 5.15163 5.23464 5.27373 5.35837 5.50284 5.61923 5.64034 5.71733 5.79198 5.81048 5.83247 5.88957 5.95574 5.96257 5.98576 6.12506 6.14133 6.20872 6.28906 6.35265 6.45363 6.56708 6.64489 6.74380 6.87881 7.02998 7.19915 7.60845 7.75740 7.80688 8.25367 8.38426 9.36937 9.89829 10.24080 11.28921 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009440 B = 0.003400 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.494151 B = 8233.213719 C =10315.795547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.066 3.934 3 O -0.307 6.307 4 C 0.312 3.688 5 C -0.135 4.135 6 C -0.052 4.052 7 C 0.561 3.439 8 O -0.539 6.539 9 N -0.685 5.685 10 C 0.137 3.863 11 H 0.092 0.908 12 C -0.185 4.185 13 C 0.190 3.810 14 H 0.066 0.934 15 N -0.700 5.700 16 C -0.241 4.241 17 H 0.074 0.926 18 C -0.009 4.009 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.292 1.292 24 C -0.127 4.127 25 C -0.128 4.128 26 C -0.134 4.134 27 C -0.106 4.106 28 C -0.165 4.165 29 C 0.140 3.860 30 N -0.528 5.528 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.151 0.849 37 H 0.408 0.592 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.378 0.622 41 H 0.256 0.744 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.069 0.931 47 H 0.079 0.921 48 H 0.152 0.848 49 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.077 1.090 8.042 12.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.215 6.215 4 C 0.133 3.867 5 C -0.157 4.157 6 C -0.063 4.063 7 C 0.347 3.653 8 O -0.417 6.417 9 N -0.337 5.337 10 C 0.032 3.968 11 H 0.110 0.890 12 C -0.227 4.227 13 C 0.078 3.922 14 H 0.084 0.916 15 N -0.339 5.339 16 C -0.371 4.371 17 H 0.092 0.908 18 C -0.205 4.205 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.219 1.219 24 C -0.129 4.129 25 C -0.166 4.166 26 C -0.171 4.171 27 C -0.144 4.144 28 C -0.186 4.186 29 C -0.015 4.015 30 N -0.253 5.253 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.169 0.831 37 H 0.247 0.753 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.213 0.787 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.170 0.830 49 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.022 1.102 7.878 13.593 hybrid contribution 1.081 -0.472 -0.776 1.412 sum -9.942 0.630 7.102 12.234 Atomic orbital electron populations 1.21819 0.93143 1.02772 1.03304 1.22588 0.94599 0.81159 1.02561 1.86228 1.16684 1.30557 1.88033 1.19578 0.84099 0.89529 0.93483 1.21049 0.94513 0.96229 1.03881 1.20153 0.93205 0.93999 0.98965 1.18032 0.82572 0.87918 0.76788 1.90737 1.61277 1.39448 1.50268 1.45617 1.05779 1.09707 1.72597 1.21688 0.93080 0.83864 0.98193 0.88987 1.24280 1.01093 1.00272 0.97053 1.20895 0.94632 0.87484 0.89177 0.91591 1.42088 1.54300 0.99972 1.37560 1.19297 1.19375 0.91629 1.06847 0.90827 1.24696 1.00439 0.95732 0.99606 1.69593 1.45701 1.00570 1.42202 0.86098 0.79873 0.78257 0.81810 1.20564 1.21824 1.21859 1.23519 0.94807 0.98258 0.96330 1.22599 0.98404 0.98500 0.97072 1.22748 0.98108 0.96707 0.99568 1.22518 0.98552 0.95465 0.97895 1.22397 1.02214 0.92477 1.01531 1.22414 0.88598 0.97602 0.92901 1.67198 1.06981 1.33229 1.17863 0.91694 0.91646 0.90378 0.91579 0.91632 0.83119 0.75258 0.90861 0.90325 0.78654 0.93385 0.90870 0.90154 0.90018 0.92121 0.91266 0.90245 0.83030 0.81431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.80 16 2 C 0.07 0.70 6.03 37.16 0.22 0.92 16 3 O -0.31 -4.17 10.11 -18.76 -0.19 -4.36 16 4 C 0.31 4.64 7.49 -17.16 -0.13 4.51 16 5 C -0.14 -2.08 9.61 -38.84 -0.37 -2.46 16 6 C -0.05 -0.84 5.91 -104.68 -0.62 -1.46 16 7 C 0.56 9.87 7.80 -12.18 -0.09 9.77 16 8 O -0.54 -10.65 16.08 5.35 0.09 -10.57 16 9 N -0.69 -11.58 4.88 -54.21 -0.26 -11.84 16 10 C 0.14 2.24 4.08 -67.49 -0.28 1.96 16 11 H 0.09 1.51 7.54 -51.93 -0.39 1.12 16 12 C -0.18 -3.21 7.68 -25.75 -0.20 -3.40 16 13 C 0.19 3.49 4.35 -67.48 -0.29 3.20 16 14 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 15 N -0.70 -15.54 4.76 -52.99 -0.25 -15.79 16 16 C -0.24 -6.12 9.98 -15.06 -0.15 -6.27 16 17 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 19 N -0.93 -25.05 13.06 55.49 0.72 -24.33 16 20 Si 0.91 21.19 29.55 -169.99 -5.02 16.17 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C -0.13 -1.93 0.76 -154.71 -0.12 -2.05 16 25 C -0.13 -1.89 7.18 -26.28 -0.19 -2.08 16 26 C -0.13 -1.73 8.08 -25.75 -0.21 -1.94 16 27 C -0.11 -1.34 7.84 -26.28 -0.21 -1.54 16 28 C -0.17 -2.47 9.61 -39.03 -0.38 -2.85 16 29 C 0.14 1.94 11.17 -17.61 -0.20 1.74 16 30 N -0.53 -7.69 9.18 -13.38 -0.12 -7.81 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.71 8.10 -51.93 -0.42 0.28 16 35 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.15 2.26 7.74 -52.48 -0.41 1.86 16 37 H 0.41 7.05 4.33 -40.82 -0.18 6.88 16 38 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.38 8.54 5.11 -40.82 -0.21 8.33 16 41 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.08 1.37 7.51 -51.93 -0.39 0.98 16 44 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.15 2.31 6.53 -52.48 -0.34 1.96 16 49 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 401.00 15.07 6.04 6.04 Total: -1.00 -29.04 401.00 -9.29 -38.33 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -7.38 Total: 17.21 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -2.91 Total: -3.05 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: 0.08 Total: -59.77 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.10 Total: -14.93 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.04 -9.29 -38.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078722506.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.463 kcal (2) G-P(sol) polarization free energy of solvation -29.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds