Wall clock time and date at job start Wed Apr 1 2020 05:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47202 * 2 1 4 4 C 1.35686 * 116.99934 * 179.97438 * 3 2 1 5 5 C 1.38899 * 119.62294 * 179.97438 * 4 3 2 6 6 C 1.39559 * 118.94801 * 180.02562 * 5 4 3 7 7 C 1.48168 * 120.89273 * 180.02562 * 6 5 4 8 8 O 1.21513 * 119.99988 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00056 * 179.71945 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27160 * 9 7 6 11 11 H 1.09000 * 112.88483 * 26.84185 * 10 9 7 12 12 C 1.53949 * 113.66436 * 255.50300 * 10 9 7 13 13 C 1.53957 * 87.29199 * 270.25891 * 12 10 9 14 14 H 1.08997 * 113.66143 * 220.79319 * 13 12 10 15 15 N 1.46501 * 113.66278 * 89.73771 * 13 12 10 16 16 C 1.36934 * 119.99904 * 104.50264 * 15 13 12 17 17 H 1.07992 * 120.00425 * 0.02562 * 16 15 13 18 18 C 1.38816 * 119.99750 * 180.02562 * 16 15 13 19 19 N 1.31614 * 120.00306 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00054 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47043 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47444 * 119.99316 * 20 18 16 23 23 H 1.48495 * 109.47004 * 240.00084 * 20 18 16 24 24 C 1.52904 * 113.66429 * 158.31034 * 10 9 7 25 25 C 1.52910 * 121.14104 * 323.85473 * 24 10 9 26 26 C 1.53953 * 86.78351 * 209.37536 * 25 24 10 27 27 C 1.52910 * 121.13887 * 215.29190 * 24 10 9 28 28 C 1.39966 * 118.21771 * 0.26900 * 6 5 4 29 29 C 1.37983 * 119.13205 * 359.45931 * 28 6 5 30 30 N 1.31910 * 120.97464 * 0.55979 * 29 28 6 31 31 H 1.09007 * 109.47044 * 299.99959 * 1 2 3 32 32 H 1.08992 * 109.47092 * 59.99767 * 1 2 3 33 33 H 1.08996 * 109.46894 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47197 * 239.99765 * 2 1 3 35 35 H 1.09000 * 109.46941 * 119.99951 * 2 1 3 36 36 H 1.08008 * 120.52454 * 0.02562 * 5 4 3 37 37 H 0.97001 * 119.99727 * 0.28056 * 9 7 6 38 38 H 1.08994 * 113.58115 * 24.86016 * 12 10 9 39 39 H 1.09000 * 113.58114 * 155.66428 * 12 10 9 40 40 H 0.97003 * 120.00205 * 284.50935 * 15 13 12 41 41 H 0.96996 * 120.00313 * 179.97438 * 19 18 16 42 42 H 1.09001 * 113.66279 * 323.84881 * 25 24 10 43 43 H 1.09001 * 113.66406 * 94.90570 * 25 24 10 44 44 H 1.08998 * 113.57982 * 270.13272 * 26 25 24 45 45 H 1.09002 * 113.57703 * 139.33584 * 26 25 24 46 46 H 1.09005 * 113.66008 * 265.09718 * 27 24 10 47 47 H 1.08997 * 113.66591 * 36.14971 * 27 24 10 48 48 H 1.08006 * 120.43787 * 179.70604 * 28 6 5 49 49 H 1.08000 * 119.50897 * 180.29107 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3515 1.5250 0.0005 5 6 3.8740 2.8120 0.0000 6 6 5.2596 2.9785 0.0000 7 6 5.8632 4.3317 0.0001 8 8 5.1497 5.3152 -0.0004 9 7 7.2037 4.4716 0.0058 10 6 7.8005 5.8095 0.0119 11 1 7.1531 6.5604 0.4648 12 6 8.3800 6.2338 -1.3498 13 6 9.7089 5.6000 -0.8995 14 1 10.5873 6.1842 -1.1738 15 7 9.8330 4.1829 -1.2498 16 6 10.6379 3.8029 -2.2904 17 1 11.1815 4.5477 -2.8526 18 6 10.7551 2.4602 -2.6227 19 7 10.0930 1.5524 -1.9373 20 14 11.8536 1.9416 -4.0417 21 1 12.4832 3.1436 -4.6453 22 1 12.9111 1.0274 -3.5407 23 1 11.0396 1.2418 -5.0678 24 6 9.2369 5.8384 0.5353 25 6 9.6813 4.9226 1.6763 26 6 10.6981 6.0185 2.0441 27 6 9.7571 7.0216 1.3524 28 6 6.0638 1.8330 -0.0052 29 6 5.4634 0.5907 0.0012 30 7 4.1497 0.4716 0.0011 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.2183 3.6703 -0.0004 37 1 7.7733 3.6864 0.0058 38 1 7.9197 5.7256 -2.1970 39 1 8.4353 7.3142 -1.4826 40 1 9.3450 3.5139 -0.7447 41 1 10.1746 0.6142 -2.1697 42 1 8.9145 4.7650 2.4347 43 1 10.1419 3.9943 1.3382 44 1 11.6600 5.9066 1.5437 45 1 10.7951 6.1807 3.1176 46 1 10.2781 7.7702 0.7554 47 1 9.0115 7.4539 2.0198 48 1 7.1404 1.9202 -0.0101 49 1 6.0781 -0.2973 0.0020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078722506.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:26 Heat of formation + Delta-G solvation = 5.577671 kcal Electronic energy + Delta-G solvation = -30690.790997 eV Core-core repulsion = 26619.497561 eV Total energy + Delta-G solvation = -4071.293436 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.21737 -41.64579 -40.17480 -38.85490 -36.66945 -35.46834 -34.28557 -33.42049 -32.95858 -31.66907 -30.87732 -26.98564 -26.76556 -25.80524 -25.44321 -24.48378 -24.31087 -23.43683 -21.92006 -21.38764 -20.30592 -19.29407 -18.70454 -18.36464 -17.45527 -17.35848 -17.03532 -16.77691 -16.65579 -16.27655 -16.07679 -15.88999 -15.59896 -15.19171 -14.92785 -14.89073 -14.82386 -14.59563 -13.89600 -13.46714 -13.44199 -13.32753 -13.24998 -13.09668 -13.02599 -12.83532 -12.68933 -12.54568 -12.48900 -12.12173 -11.94481 -11.82708 -11.74886 -11.51050 -11.27275 -11.11385 -11.07590 -10.90158 -10.76048 -10.64120 -9.95288 -9.65337 -8.96607 -7.92962 -5.18753 -0.47701 0.02474 1.48630 1.51441 1.58371 1.67513 1.72504 2.12830 2.56944 2.69136 3.18868 3.34648 3.40107 3.44758 3.68817 3.79714 3.83651 3.89991 3.94293 3.99875 4.03536 4.08697 4.16441 4.20433 4.28137 4.45841 4.54330 4.56460 4.67141 4.71407 4.78374 4.82609 4.88140 4.93031 4.93946 4.95064 5.00643 5.13043 5.15753 5.17301 5.19906 5.26674 5.27722 5.51892 5.59287 5.63305 5.66338 6.13470 6.30574 6.37686 6.64380 6.98314 7.38365 8.09066 8.34431 9.29834 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009440 B = 0.003400 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.494151 B = 8233.213719 C =10315.795547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.059 3.941 3 O -0.315 6.315 4 C 0.311 3.689 5 C -0.143 4.143 6 C -0.062 4.062 7 C 0.560 3.440 8 O -0.565 6.565 9 N -0.683 5.683 10 C 0.135 3.865 11 H 0.098 0.902 12 C -0.179 4.179 13 C 0.176 3.824 14 H 0.065 0.935 15 N -0.708 5.708 16 C -0.241 4.241 17 H 0.072 0.928 18 C -0.060 4.060 19 N -0.954 5.954 20 Si 0.962 3.038 21 H -0.273 1.273 22 H -0.294 1.294 23 H -0.299 1.299 24 C -0.117 4.117 25 C -0.130 4.130 26 C -0.127 4.127 27 C -0.093 4.093 28 C -0.169 4.169 29 C 0.145 3.855 30 N -0.529 5.529 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.150 0.850 37 H 0.406 0.594 38 H 0.041 0.959 39 H 0.104 0.896 40 H 0.375 0.625 41 H 0.252 0.748 42 H 0.085 0.915 43 H 0.051 0.949 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.100 0.900 48 H 0.147 0.853 49 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.269 1.572 8.926 13.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.016 4.016 3 O -0.222 6.222 4 C 0.132 3.868 5 C -0.165 4.165 6 C -0.073 4.073 7 C 0.347 3.653 8 O -0.445 6.445 9 N -0.333 5.333 10 C 0.030 3.970 11 H 0.116 0.884 12 C -0.220 4.220 13 C 0.066 3.934 14 H 0.083 0.917 15 N -0.347 5.347 16 C -0.373 4.373 17 H 0.090 0.910 18 C -0.254 4.254 19 N -0.604 5.604 20 Si 0.793 3.207 21 H -0.198 1.198 22 H -0.221 1.221 23 H -0.226 1.226 24 C -0.119 4.119 25 C -0.167 4.167 26 C -0.165 4.165 27 C -0.131 4.131 28 C -0.190 4.190 29 C -0.010 4.010 30 N -0.253 5.253 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.168 0.832 37 H 0.245 0.755 38 H 0.060 0.940 39 H 0.123 0.877 40 H 0.209 0.791 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.118 0.882 48 H 0.164 0.836 49 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -11.212 1.622 8.769 14.326 hybrid contribution 1.105 -0.619 -1.057 1.650 sum -10.106 1.004 7.712 12.752 Atomic orbital electron populations 1.21841 0.90851 1.04367 1.03360 1.22875 0.96393 0.79750 1.02562 1.86239 1.15835 1.32496 1.87672 1.19668 0.84806 0.89361 0.92985 1.21074 0.94291 0.96695 1.04394 1.20090 0.93642 0.93522 1.00005 1.18271 0.82588 0.88294 0.76186 1.90710 1.61739 1.40348 1.51676 1.45659 1.05628 1.09971 1.72056 1.21771 0.93863 0.83646 0.97675 0.88426 1.24223 1.00014 1.01427 0.96378 1.21085 0.94991 0.85529 0.91827 0.91722 1.42142 1.53947 1.01645 1.36975 1.19553 1.18946 0.91644 1.07170 0.91022 1.25304 1.02171 0.96075 1.01836 1.69695 1.46969 1.00376 1.43340 0.85249 0.78283 0.77764 0.79438 1.19817 1.22132 1.22645 1.23398 0.93146 1.00491 0.94834 1.22607 0.99316 0.97679 0.97131 1.22710 0.97149 0.95552 1.01043 1.22557 0.98572 0.94629 0.97365 1.22375 1.01845 0.92731 1.02008 1.22824 0.88641 0.98018 0.91546 1.67295 1.07130 1.33009 1.17894 0.91468 0.91737 0.87984 0.91809 0.91365 0.83188 0.75509 0.93971 0.87740 0.79099 0.93858 0.89694 0.93011 0.90993 0.89804 0.90042 0.88154 0.83581 0.78879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.06 1.18 6.03 71.98 0.43 1.61 16 3 O -0.31 -8.37 10.11 -90.05 -0.91 -9.29 16 4 C 0.31 9.17 7.49 84.80 0.63 9.80 16 5 C -0.14 -4.46 9.61 22.75 0.22 -4.24 16 6 C -0.06 -2.02 5.91 -19.90 -0.12 -2.14 16 7 C 0.56 20.01 7.80 86.88 0.68 20.69 16 8 O -0.56 -22.54 16.08 -3.76 -0.06 -22.60 16 9 N -0.68 -23.32 4.88 -443.73 -2.17 -25.48 16 10 C 0.14 4.33 4.08 45.28 0.18 4.51 16 11 H 0.10 3.06 7.54 -2.39 -0.02 3.04 16 12 C -0.18 -6.11 7.68 31.23 0.24 -5.87 16 13 C 0.18 6.40 4.35 45.28 0.20 6.60 16 14 H 0.06 2.35 8.12 -2.39 -0.02 2.33 16 15 N -0.71 -31.85 4.76 -321.56 -1.53 -33.38 16 16 C -0.24 -12.39 9.98 84.03 0.84 -11.55 16 17 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 18 C -0.06 -3.19 5.50 84.86 0.47 -2.72 16 19 N -0.95 -52.00 13.06 21.65 0.28 -51.72 16 20 Si 0.96 43.90 29.55 68.60 2.03 45.93 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 23 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 24 C -0.12 -3.39 0.76 -52.31 -0.04 -3.43 16 25 C -0.13 -3.67 7.18 30.89 0.22 -3.45 16 26 C -0.13 -2.97 8.08 31.23 0.25 -2.72 16 27 C -0.09 -2.06 7.84 30.89 0.24 -1.82 16 28 C -0.17 -5.10 9.61 22.63 0.22 -4.88 16 29 C 0.14 3.92 11.17 84.62 0.94 4.87 16 30 N -0.53 -15.02 9.18 -309.14 -2.84 -17.85 16 31 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 35 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 36 H 0.15 4.61 7.74 -2.91 -0.02 4.59 16 37 H 0.41 14.39 4.33 -92.71 -0.40 13.99 16 38 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 40 H 0.37 17.31 5.11 -92.71 -0.47 16.83 16 41 H 0.25 13.47 8.31 -92.71 -0.77 12.69 16 42 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.05 1.78 7.51 -2.39 -0.02 1.76 16 44 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 47 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.15 4.58 6.53 -2.91 -0.02 4.56 16 49 H 0.19 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -62.37 401.00 1.25 -61.11 By element: Atomic # 1 Polarization: 49.21 SS G_CDS: 0.10 Total: 49.31 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 6.35 Total: 3.97 kcal Atomic # 7 Polarization: -122.18 SS G_CDS: -6.25 Total: -128.44 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.97 Total: -31.89 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -62.37 1.25 -61.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078722506.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.690 kcal (2) G-P(sol) polarization free energy of solvation -62.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds