Wall clock time and date at job start Wed Apr 1 2020 05:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.47132 * 2 1 4 4 C 1.35431 * 116.99946 * 179.97438 * 3 2 1 5 5 N 1.32243 * 119.79715 * 0.25247 * 4 3 2 6 6 C 1.31879 * 121.79706 * 180.28782 * 5 4 3 7 7 C 1.38362 * 121.18395 * 359.74919 * 6 5 4 8 8 C 1.38335 * 119.46213 * 359.97186 * 7 6 5 9 9 C 1.39989 * 118.34576 * 0.02562 * 8 7 6 10 10 C 1.47519 * 120.59625 * 179.97438 * 9 8 7 11 11 O 1.21589 * 120.00299 * 179.97438 * 10 9 8 12 12 N 1.34779 * 119.99969 * 359.97438 * 10 9 8 13 13 C 1.46500 * 120.00219 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.94850 * 336.41199 * 13 12 10 15 15 C 1.53953 * 113.65866 * 107.81081 * 13 12 10 16 16 C 1.53951 * 87.29074 * 139.21235 * 15 13 12 17 17 H 1.09003 * 113.66431 * 220.79118 * 16 15 13 18 18 N 1.46505 * 113.74906 * 89.74809 * 16 15 13 19 19 C 1.36941 * 119.99908 * 107.76949 * 18 16 15 20 20 H 1.08002 * 119.99796 * 0.02562 * 19 18 16 21 21 C 1.38807 * 119.99765 * 180.02562 * 19 18 16 22 22 N 1.31617 * 120.00246 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99847 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47237 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47414 * 119.99743 * 23 21 19 26 26 H 1.48504 * 109.47141 * 239.99978 * 23 21 19 27 27 C 1.52908 * 86.78683 * 335.26454 * 16 15 13 28 28 C 1.52906 * 121.14322 * 150.62061 * 27 16 15 29 29 C 1.53957 * 86.77902 * 100.81952 * 28 27 16 30 30 C 1.52912 * 121.13762 * 259.18846 * 27 16 15 31 31 H 1.09005 * 109.47085 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46647 * 299.99909 * 1 2 3 33 33 H 1.08994 * 109.46912 * 59.99819 * 1 2 3 34 34 H 1.09001 * 109.46647 * 240.00091 * 2 1 3 35 35 H 1.09006 * 109.46967 * 120.00541 * 2 1 3 36 36 H 1.07994 * 119.40993 * 179.71906 * 6 5 4 37 37 H 1.08007 * 120.26691 * 179.97438 * 7 6 5 38 38 H 1.07996 * 120.82876 * 179.97438 * 8 7 6 39 39 H 0.97003 * 120.00273 * 0.02562 * 12 10 9 40 40 H 1.09002 * 113.58246 * 24.61266 * 15 13 12 41 41 H 1.08994 * 113.58138 * 253.81161 * 15 13 12 42 42 H 0.96992 * 120.00062 * 287.76921 * 18 16 15 43 43 H 0.97002 * 120.00020 * 180.02562 * 22 21 19 44 44 H 1.08997 * 113.66080 * 346.35409 * 28 27 16 45 45 H 1.08997 * 113.66819 * 215.29213 * 28 27 16 46 46 H 1.09004 * 113.57788 * 139.34050 * 29 28 27 47 47 H 1.08996 * 113.58263 * 270.12959 * 29 28 27 48 48 H 1.09002 * 113.66342 * 144.69991 * 30 27 16 49 49 H 1.08994 * 113.65844 * 13.64914 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3490 1.5247 0.0005 5 7 4.1509 0.4731 -0.0040 6 6 5.4635 0.6001 0.0019 7 6 6.0626 1.8473 0.0081 8 6 5.2715 2.9821 0.0075 9 6 3.8807 2.8228 0.0010 10 6 2.9902 3.9989 0.0006 11 8 1.7837 3.8480 -0.0055 12 7 3.5140 5.2407 0.0070 13 6 2.6297 6.4087 0.0060 14 1 1.6418 6.1935 -0.4013 15 6 2.5938 7.1577 1.3506 16 6 2.6042 8.4658 0.5390 17 1 3.2418 9.2402 0.9654 18 7 1.2677 8.9555 0.1920 19 6 0.7601 10.0624 0.8183 20 1 1.3453 10.5747 1.5677 21 6 -0.5063 10.5260 0.4899 22 7 -1.2192 9.9020 -0.4238 23 14 -1.1985 12.0365 1.3437 24 1 -0.2066 12.5501 2.3223 25 1 -1.4880 13.0865 0.3344 26 1 -2.4512 11.6734 2.0536 27 6 3.2741 7.6660 -0.5789 28 6 3.0795 8.0441 -2.0477 29 6 4.4655 8.7098 -1.9699 30 6 4.7831 7.7453 -0.8129 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5140 0.8900 36 1 6.0819 -0.2852 0.0025 37 1 7.1391 1.9341 0.0134 38 1 5.7157 3.9665 0.0126 39 1 4.4765 5.3612 0.0114 40 1 3.4894 7.0123 1.9547 41 1 1.6734 7.0007 1.9128 42 1 0.7424 8.4956 -0.4813 43 1 -2.1041 10.2262 -0.6535 44 1 2.2646 8.7487 -2.2137 45 1 3.0432 7.1863 -2.7192 46 1 5.0788 8.5448 -2.8559 47 1 4.4303 9.7565 -1.6680 48 1 5.2256 6.8034 -1.1373 49 1 5.3291 8.2110 0.0075 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078796639.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:38 Heat of formation + Delta-G solvation = 23.475251 kcal Electronic energy + Delta-G solvation = -30535.708945 eV Core-core repulsion = 26465.191607 eV Total energy + Delta-G solvation = -4070.517338 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.13155 -40.38936 -38.53134 -38.15945 -35.01897 -34.12104 -33.09714 -32.20092 -32.02651 -30.28322 -29.50088 -25.53138 -25.36350 -24.57931 -24.15878 -23.75613 -22.47674 -22.41558 -20.48362 -20.34559 -18.89220 -18.08951 -17.42067 -17.07483 -16.92798 -16.47848 -15.77011 -15.36767 -15.14153 -14.94249 -14.73152 -14.56552 -14.06919 -14.05024 -13.86614 -13.47515 -13.01812 -12.84999 -12.65529 -12.54849 -12.53466 -12.46781 -12.15345 -11.92504 -11.64555 -11.58125 -11.37098 -10.93018 -10.89410 -10.83064 -10.72137 -10.25208 -10.22411 -10.12986 -10.03378 -9.80743 -9.73171 -9.52942 -9.39098 -8.86125 -8.80219 -8.51172 -6.98580 -5.77950 -3.07706 0.45142 0.94984 2.81358 2.91084 3.26640 3.43423 3.48932 3.51410 3.67309 3.98078 4.39885 4.52222 4.55147 4.69393 4.78767 4.82520 4.87825 4.91900 4.96950 4.99690 5.14971 5.20621 5.22559 5.36794 5.47124 5.50600 5.51843 5.66578 5.71396 5.73307 5.80701 5.94203 5.95730 5.96764 6.02648 6.05831 6.08869 6.12400 6.25566 6.45346 6.59000 6.68561 6.73573 6.80907 6.89573 7.07611 7.11594 7.46535 7.70354 7.73575 8.40008 8.43610 9.51290 10.07565 10.42070 11.44070 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012937 B = 0.002783 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.769999 B =10057.336735 C =11580.379169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.267 6.267 4 C 0.373 3.627 5 N -0.547 5.547 6 C 0.162 3.838 7 C -0.223 4.223 8 C -0.010 4.010 9 C -0.206 4.206 10 C 0.557 3.443 11 O -0.511 6.511 12 N -0.712 5.712 13 C 0.142 3.858 14 H 0.115 0.885 15 C -0.182 4.182 16 C 0.198 3.802 17 H 0.068 0.932 18 N -0.700 5.700 19 C -0.243 4.243 20 H 0.073 0.927 21 C -0.010 4.010 22 N -0.928 5.928 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.291 1.291 27 C -0.125 4.125 28 C -0.125 4.125 29 C -0.133 4.133 30 C -0.116 4.116 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.163 0.837 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.392 0.608 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.387 0.613 43 H 0.256 0.744 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.058 0.942 47 H 0.081 0.919 48 H 0.073 0.927 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.625 -18.635 -0.978 25.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.171 6.171 4 C 0.193 3.807 5 N -0.272 5.272 6 C 0.005 3.995 7 C -0.243 4.243 8 C -0.036 4.036 9 C -0.212 4.212 10 C 0.342 3.658 11 O -0.386 6.386 12 N -0.364 5.364 13 C 0.038 3.962 14 H 0.133 0.867 15 C -0.225 4.225 16 C 0.084 3.916 17 H 0.086 0.914 18 N -0.338 5.338 19 C -0.374 4.374 20 H 0.090 0.910 21 C -0.207 4.207 22 N -0.576 5.576 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.218 1.218 27 C -0.127 4.127 28 C -0.163 4.163 29 C -0.170 4.170 30 C -0.154 4.154 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.180 0.820 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.227 0.773 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.222 0.778 43 H 0.066 0.934 44 H 0.101 0.899 45 H 0.089 0.911 46 H 0.077 0.923 47 H 0.100 0.900 48 H 0.091 0.909 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.986 -19.187 -0.897 24.990 hybrid contribution 0.418 1.119 0.249 1.220 sum 16.404 -18.068 -0.648 24.413 Atomic orbital electron populations 1.21797 0.92674 1.02505 1.04038 1.22701 0.95374 0.81172 1.02122 1.86569 1.15390 1.29866 1.85261 1.19861 0.84780 0.88443 0.87576 1.67502 1.06618 1.32474 1.20575 1.22642 0.89212 0.97623 0.90012 1.21909 1.01656 0.92952 1.07781 1.21646 0.91258 0.99957 0.90745 1.20190 0.94320 0.92750 1.13923 1.17796 0.87856 0.82668 0.77437 1.90865 1.14086 1.85645 1.48054 1.45938 1.09963 1.05386 1.75087 1.22419 0.94473 0.81417 0.97918 0.86705 1.24304 1.01543 1.00011 0.96614 1.20621 0.88130 0.91910 0.90908 0.91400 1.42120 1.12591 1.32265 1.46819 1.19288 0.98496 1.03201 1.16443 0.90950 1.24762 0.97161 0.99459 0.99277 1.69677 1.11985 1.41586 1.34324 0.86119 0.78851 0.82559 0.78635 1.20525 1.21867 1.21844 1.23630 0.95671 0.96746 0.96686 1.22630 0.97977 1.00323 0.95374 1.22735 0.97454 0.99212 0.97629 1.22525 0.94703 0.99210 0.98918 0.90478 0.91344 0.91352 0.91702 0.91712 0.81971 0.83924 0.83917 0.77319 0.91286 0.90884 0.77826 0.93436 0.89862 0.91110 0.92314 0.90026 0.90890 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.28 37.16 0.38 -1.14 16 2 C 0.06 0.70 6.03 37.16 0.22 0.92 16 3 O -0.27 -4.06 8.22 -39.76 -0.33 -4.39 16 4 C 0.37 5.16 7.51 -16.61 -0.12 5.03 16 5 N -0.55 -6.25 9.21 -12.98 -0.12 -6.37 16 6 C 0.16 1.29 11.17 -17.49 -0.20 1.10 16 7 C -0.22 -1.55 10.09 -39.50 -0.40 -1.95 16 8 C -0.01 -0.09 9.64 -38.89 -0.37 -0.46 16 9 C -0.21 -2.68 5.90 -104.69 -0.62 -3.30 16 10 C 0.56 8.95 7.77 -12.48 -0.10 8.85 16 11 O -0.51 -10.50 14.79 -16.48 -0.24 -10.75 16 12 N -0.71 -9.92 5.20 -54.41 -0.28 -10.20 16 13 C 0.14 2.40 4.04 -67.48 -0.27 2.13 16 14 H 0.12 2.38 7.46 -51.93 -0.39 1.99 16 15 C -0.18 -3.26 7.69 -25.75 -0.20 -3.46 16 16 C 0.20 3.83 4.36 -67.48 -0.29 3.53 16 17 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 18 N -0.70 -17.20 4.86 -52.99 -0.26 -17.46 16 19 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 22 N -0.93 -27.98 13.06 55.49 0.72 -27.25 16 23 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 C -0.12 -1.97 0.92 -154.71 -0.14 -2.11 16 28 C -0.13 -2.02 7.62 -26.28 -0.20 -2.22 16 29 C -0.13 -1.77 8.08 -25.75 -0.21 -1.98 16 30 C -0.12 -1.40 7.15 -26.28 -0.19 -1.59 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 36 H 0.16 0.72 8.06 -52.49 -0.42 0.29 16 37 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 38 H 0.14 0.86 6.51 -52.49 -0.34 0.52 16 39 H 0.39 4.12 5.13 -40.82 -0.21 3.91 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.39 10.27 7.61 -40.82 -0.31 9.96 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 48 H 0.07 0.73 7.03 -51.93 -0.36 0.37 16 49 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 401.08 15.07 6.04 6.04 Total: -1.00 -34.03 401.08 -9.90 -43.93 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -7.47 Total: 12.96 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -2.95 Total: -3.82 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: 0.06 Total: -61.28 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.57 Total: -15.13 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.03 -9.90 -43.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078796639.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.406 kcal (2) G-P(sol) polarization free energy of solvation -34.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds