Wall clock time and date at job start Wed Apr 1 2020 05:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.47132 * 2 1 4 4 C 1.35431 * 116.99946 * 179.97438 * 3 2 1 5 5 N 1.32243 * 119.79715 * 0.25247 * 4 3 2 6 6 C 1.31879 * 121.79706 * 180.28782 * 5 4 3 7 7 C 1.38362 * 121.18395 * 359.74919 * 6 5 4 8 8 C 1.38335 * 119.46213 * 359.97186 * 7 6 5 9 9 C 1.39989 * 118.34576 * 0.02562 * 8 7 6 10 10 C 1.47519 * 120.59625 * 179.97438 * 9 8 7 11 11 O 1.21589 * 120.00299 * 179.97438 * 10 9 8 12 12 N 1.34779 * 119.99969 * 359.97438 * 10 9 8 13 13 C 1.46500 * 120.00219 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.94850 * 336.41199 * 13 12 10 15 15 C 1.53953 * 113.65866 * 107.81081 * 13 12 10 16 16 C 1.53951 * 87.29074 * 139.21235 * 15 13 12 17 17 H 1.09003 * 113.66431 * 220.79118 * 16 15 13 18 18 N 1.46505 * 113.74906 * 89.74809 * 16 15 13 19 19 C 1.36941 * 119.99908 * 107.76949 * 18 16 15 20 20 H 1.08002 * 119.99796 * 0.02562 * 19 18 16 21 21 C 1.38807 * 119.99765 * 180.02562 * 19 18 16 22 22 N 1.31617 * 120.00246 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99847 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47237 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47414 * 119.99743 * 23 21 19 26 26 H 1.48504 * 109.47141 * 239.99978 * 23 21 19 27 27 C 1.52908 * 86.78683 * 335.26454 * 16 15 13 28 28 C 1.52906 * 121.14322 * 150.62061 * 27 16 15 29 29 C 1.53957 * 86.77902 * 100.81952 * 28 27 16 30 30 C 1.52912 * 121.13762 * 259.18846 * 27 16 15 31 31 H 1.09005 * 109.47085 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46647 * 299.99909 * 1 2 3 33 33 H 1.08994 * 109.46912 * 59.99819 * 1 2 3 34 34 H 1.09001 * 109.46647 * 240.00091 * 2 1 3 35 35 H 1.09006 * 109.46967 * 120.00541 * 2 1 3 36 36 H 1.07994 * 119.40993 * 179.71906 * 6 5 4 37 37 H 1.08007 * 120.26691 * 179.97438 * 7 6 5 38 38 H 1.07996 * 120.82876 * 179.97438 * 8 7 6 39 39 H 0.97003 * 120.00273 * 0.02562 * 12 10 9 40 40 H 1.09002 * 113.58246 * 24.61266 * 15 13 12 41 41 H 1.08994 * 113.58138 * 253.81161 * 15 13 12 42 42 H 0.96992 * 120.00062 * 287.76921 * 18 16 15 43 43 H 0.97002 * 120.00020 * 180.02562 * 22 21 19 44 44 H 1.08997 * 113.66080 * 346.35409 * 28 27 16 45 45 H 1.08997 * 113.66819 * 215.29213 * 28 27 16 46 46 H 1.09004 * 113.57788 * 139.34050 * 29 28 27 47 47 H 1.08996 * 113.58263 * 270.12959 * 29 28 27 48 48 H 1.09002 * 113.66342 * 144.69991 * 30 27 16 49 49 H 1.08994 * 113.65844 * 13.64914 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3490 1.5247 0.0005 5 7 4.1509 0.4731 -0.0040 6 6 5.4635 0.6001 0.0019 7 6 6.0626 1.8473 0.0081 8 6 5.2715 2.9821 0.0075 9 6 3.8807 2.8228 0.0010 10 6 2.9902 3.9989 0.0006 11 8 1.7837 3.8480 -0.0055 12 7 3.5140 5.2407 0.0070 13 6 2.6297 6.4087 0.0060 14 1 1.6418 6.1935 -0.4013 15 6 2.5938 7.1577 1.3506 16 6 2.6042 8.4658 0.5390 17 1 3.2418 9.2402 0.9654 18 7 1.2677 8.9555 0.1920 19 6 0.7601 10.0624 0.8183 20 1 1.3453 10.5747 1.5677 21 6 -0.5063 10.5260 0.4899 22 7 -1.2192 9.9020 -0.4238 23 14 -1.1985 12.0365 1.3437 24 1 -0.2066 12.5501 2.3223 25 1 -1.4880 13.0865 0.3344 26 1 -2.4512 11.6734 2.0536 27 6 3.2741 7.6660 -0.5789 28 6 3.0795 8.0441 -2.0477 29 6 4.4655 8.7098 -1.9699 30 6 4.7831 7.7453 -0.8129 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5140 0.8900 36 1 6.0819 -0.2852 0.0025 37 1 7.1391 1.9341 0.0134 38 1 5.7157 3.9665 0.0126 39 1 4.4765 5.3612 0.0114 40 1 3.4894 7.0123 1.9547 41 1 1.6734 7.0007 1.9128 42 1 0.7424 8.4956 -0.4813 43 1 -2.1041 10.2262 -0.6535 44 1 2.2646 8.7487 -2.2137 45 1 3.0432 7.1863 -2.7192 46 1 5.0788 8.5448 -2.8559 47 1 4.4303 9.7565 -1.6680 48 1 5.2256 6.8034 -1.1373 49 1 5.3291 8.2110 0.0075 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078796639.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:35 Heat of formation + Delta-G solvation = -0.290957 kcal Electronic energy + Delta-G solvation = -30536.739526 eV Core-core repulsion = 26465.191607 eV Total energy + Delta-G solvation = -4071.547918 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.13678 -41.57341 -39.75032 -39.03173 -36.48675 -35.66569 -34.39460 -33.31822 -33.00758 -31.57381 -30.89527 -26.75275 -26.68027 -25.74053 -25.45086 -25.00253 -23.82418 -23.29210 -21.68976 -21.67655 -19.84967 -19.42638 -18.99874 -18.30074 -18.01460 -17.39223 -16.99545 -16.67001 -16.30954 -16.18671 -15.87395 -15.82237 -15.60182 -15.00207 -14.90446 -14.82116 -14.40645 -14.11327 -13.85772 -13.56635 -13.50946 -13.35802 -13.33337 -13.27491 -13.09703 -12.85281 -12.68515 -12.59708 -12.49402 -12.15353 -11.96978 -11.78855 -11.77295 -11.33286 -11.27076 -11.07377 -11.03700 -10.90088 -10.74950 -10.55155 -9.91187 -9.51789 -9.01696 -7.95321 -5.24701 -0.33441 0.24964 1.45880 1.47348 1.57187 1.87532 2.00773 2.11457 2.54082 2.81102 3.25484 3.36275 3.42397 3.56251 3.69947 3.77228 3.81813 3.97032 3.99326 4.01583 4.04483 4.11271 4.19541 4.21590 4.24902 4.36174 4.50687 4.59905 4.66514 4.76580 4.79923 4.85197 4.86673 4.89603 4.91403 5.06160 5.08719 5.12880 5.15114 5.15933 5.26040 5.32618 5.43315 5.46992 5.53137 5.61951 5.74757 6.24634 6.26464 6.57241 6.76634 7.28777 7.31435 8.07670 8.29840 9.28347 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012937 B = 0.002783 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.769999 B =10057.336735 C =11580.379169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.305 6.305 4 C 0.346 3.654 5 N -0.562 5.562 6 C 0.161 3.839 7 C -0.202 4.202 8 C -0.002 4.002 9 C -0.236 4.236 10 C 0.553 3.447 11 O -0.572 6.572 12 N -0.692 5.692 13 C 0.148 3.852 14 H 0.065 0.935 15 C -0.171 4.171 16 C 0.180 3.820 17 H 0.077 0.923 18 N -0.716 5.716 19 C -0.238 4.238 20 H 0.082 0.918 21 C -0.078 4.078 22 N -0.971 5.971 23 Si 0.974 3.026 24 H -0.261 1.261 25 H -0.293 1.293 26 H -0.298 1.298 27 C -0.114 4.114 28 C -0.137 4.137 29 C -0.123 4.123 30 C -0.093 4.093 31 H 0.108 0.892 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.203 0.797 37 H 0.190 0.810 38 H 0.176 0.824 39 H 0.413 0.587 40 H 0.106 0.894 41 H 0.033 0.967 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.039 0.961 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.070 0.930 48 H 0.108 0.892 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.166 -19.498 -0.390 30.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.211 6.211 4 C 0.166 3.834 5 N -0.287 5.287 6 C 0.005 3.995 7 C -0.222 4.222 8 C -0.027 4.027 9 C -0.242 4.242 10 C 0.341 3.659 11 O -0.452 6.452 12 N -0.344 5.344 13 C 0.043 3.957 14 H 0.083 0.917 15 C -0.213 4.213 16 C 0.069 3.931 17 H 0.095 0.905 18 N -0.353 5.353 19 C -0.370 4.370 20 H 0.100 0.900 21 C -0.270 4.270 22 N -0.622 5.622 23 Si 0.803 3.197 24 H -0.185 1.185 25 H -0.220 1.220 26 H -0.226 1.226 27 C -0.116 4.116 28 C -0.175 4.175 29 C -0.161 4.161 30 C -0.131 4.131 31 H 0.127 0.873 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.219 0.781 37 H 0.207 0.793 38 H 0.194 0.806 39 H 0.253 0.747 40 H 0.124 0.876 41 H 0.052 0.948 42 H 0.203 0.797 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.096 0.904 46 H 0.104 0.896 47 H 0.089 0.911 48 H 0.126 0.874 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 21.646 -20.051 -0.281 29.507 hybrid contribution -1.161 1.249 0.069 1.706 sum 20.485 -18.803 -0.212 27.807 Atomic orbital electron populations 1.21825 0.92256 1.04050 1.02534 1.22829 0.95757 0.80268 1.02622 1.86531 1.17073 1.31608 1.85856 1.20133 0.84582 0.89512 0.89128 1.67553 1.08185 1.31710 1.21204 1.23500 0.88241 0.99993 0.87781 1.22424 1.03665 0.91465 1.04631 1.22064 0.89153 1.02434 0.89081 1.20071 0.95791 0.90924 1.17398 1.18391 0.87617 0.83878 0.76027 1.90836 1.16951 1.86524 1.50877 1.45609 1.10554 1.03900 1.74373 1.21918 0.93360 0.83109 0.97318 0.91725 1.24194 1.01318 0.99042 0.96793 1.20892 0.86193 0.92729 0.93247 0.90530 1.42282 1.14666 1.31851 1.46472 1.19722 0.98424 1.03243 1.15588 0.90008 1.25605 0.97944 1.02794 1.00658 1.69856 1.12136 1.43605 1.36589 0.85059 0.77952 0.78997 0.77670 1.18536 1.22048 1.22570 1.23481 0.98889 0.93982 0.95265 1.22678 0.98808 1.00159 0.95810 1.22683 0.95232 0.98706 0.99459 1.22575 0.91107 1.00573 0.98843 0.87336 0.92821 0.92796 0.91065 0.91093 0.78061 0.79277 0.80634 0.74734 0.87562 0.94759 0.79700 0.94157 0.94192 0.90399 0.89560 0.91105 0.87407 0.89081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 10.28 71.98 0.74 -2.47 16 2 C 0.06 1.43 6.03 71.98 0.43 1.87 16 3 O -0.31 -9.96 8.22 -66.45 -0.55 -10.51 16 4 C 0.35 9.62 7.51 85.13 0.64 10.25 16 5 N -0.56 -11.95 9.21 -307.99 -2.84 -14.79 16 6 C 0.16 1.91 11.17 84.72 0.95 2.85 16 7 C -0.20 -1.68 10.09 22.32 0.23 -1.46 16 8 C 0.00 -0.02 9.64 22.72 0.22 0.20 16 9 C -0.24 -5.94 5.90 -19.91 -0.12 -6.06 16 10 C 0.55 18.21 7.77 86.69 0.67 18.88 16 11 O -0.57 -25.53 14.79 16.82 0.25 -25.28 16 12 N -0.69 -18.50 5.20 -444.32 -2.31 -20.81 16 13 C 0.15 5.16 4.04 45.28 0.18 5.35 16 14 H 0.06 2.95 7.46 -2.39 -0.02 2.93 16 15 C -0.17 -6.18 7.69 31.23 0.24 -5.94 16 16 C 0.18 7.04 4.36 45.28 0.20 7.24 16 17 H 0.08 2.84 8.10 -2.39 -0.02 2.82 16 18 N -0.72 -36.98 4.86 -321.55 -1.56 -38.54 16 19 C -0.24 -13.38 9.97 84.03 0.84 -12.54 16 20 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 21 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 22 N -0.97 -61.77 13.06 21.65 0.28 -61.48 16 23 Si 0.97 47.21 29.55 68.60 2.03 49.24 16 24 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 25 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 26 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 27 C -0.11 -3.50 0.92 -52.31 -0.05 -3.55 16 28 C -0.14 -4.42 7.62 30.89 0.24 -4.19 16 29 C -0.12 -2.94 8.08 31.23 0.25 -2.68 16 30 C -0.09 -1.84 7.15 30.88 0.22 -1.62 16 31 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.53 8.10 -2.39 -0.02 1.51 16 35 H 0.07 1.53 8.11 -2.38 -0.02 1.51 16 36 H 0.20 0.67 8.06 -2.91 -0.02 0.65 16 37 H 0.19 -0.10 8.06 -2.91 -0.02 -0.13 16 38 H 0.18 1.04 6.51 -2.91 -0.02 1.02 16 39 H 0.41 7.07 5.13 -92.71 -0.48 6.59 16 40 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 41 H 0.03 1.48 8.14 -2.39 -0.02 1.47 16 42 H 0.37 21.29 7.61 -92.71 -0.71 20.58 16 43 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 44 H 0.04 1.63 7.58 -2.39 -0.02 1.61 16 45 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.11 1.46 7.03 -2.39 -0.02 1.44 16 49 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -84.70 401.08 1.44 -83.25 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: -0.21 Total: 36.94 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 6.34 Total: 1.99 kcal Atomic # 7 Polarization: -129.20 SS G_CDS: -6.43 Total: -135.62 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.30 Total: -35.79 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -84.70 1.44 -83.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078796639.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.963 kcal (2) G-P(sol) polarization free energy of solvation -84.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds