Wall clock time and date at job start Wed Apr 1 2020 05:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42903 * 109.47252 * 2 1 4 4 C 1.35434 * 116.99984 * 180.02562 * 3 2 1 5 5 N 1.32236 * 119.79873 * 359.97438 * 4 3 2 6 6 C 1.31877 * 121.79933 * 180.02562 * 5 4 3 7 7 C 1.38357 * 121.18608 * 0.02562 * 6 5 4 8 8 C 1.38339 * 119.45519 * 359.73962 * 7 6 5 9 9 C 1.39984 * 118.34947 * 0.50125 * 8 7 6 10 10 C 1.47528 * 120.59327 * 179.77863 * 9 8 7 11 11 O 1.21594 * 119.99634 * 179.71773 * 10 9 8 12 12 N 1.34770 * 120.00265 * 359.71778 * 10 9 8 13 13 C 1.46504 * 119.99827 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.94665 * 26.91031 * 13 12 10 15 15 C 1.53950 * 113.66645 * 255.49818 * 13 12 10 16 16 C 1.53950 * 87.29592 * 220.79793 * 15 13 12 17 17 H 1.09006 * 113.65941 * 270.17111 * 16 15 13 18 18 N 1.46499 * 113.66414 * 139.20642 * 16 15 13 19 19 C 1.36939 * 119.99933 * 104.77943 * 18 16 15 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 16 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 16 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47173 * 60.00435 * 23 21 19 25 25 H 1.48497 * 109.47172 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47132 * 300.00314 * 23 21 19 27 27 C 1.52914 * 86.78449 * 24.73365 * 16 15 13 28 28 C 1.52907 * 121.14350 * 209.38294 * 27 16 15 29 29 C 1.53946 * 86.78434 * 209.37620 * 28 27 16 30 30 C 1.52906 * 121.13637 * 100.81404 * 27 16 15 31 31 H 1.09010 * 109.46850 * 60.00013 * 1 2 3 32 32 H 1.08997 * 109.47501 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47438 * 300.00679 * 1 2 3 34 34 H 1.08998 * 109.47465 * 239.99877 * 2 1 3 35 35 H 1.09001 * 109.47037 * 119.99726 * 2 1 3 36 36 H 1.08001 * 119.41090 * 180.02562 * 6 5 4 37 37 H 1.08000 * 120.27217 * 179.97438 * 7 6 5 38 38 H 1.08003 * 120.82380 * 180.25473 * 8 7 6 39 39 H 0.96999 * 120.00018 * 0.02562 * 12 10 9 40 40 H 1.08998 * 113.57862 * 106.19494 * 15 13 12 41 41 H 1.08999 * 113.64870 * 335.40788 * 15 13 12 42 42 H 0.97001 * 119.99790 * 284.49917 * 18 16 15 43 43 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 44 44 H 1.09001 * 113.66043 * 323.84687 * 28 27 16 45 45 H 1.09000 * 113.66310 * 94.90448 * 28 27 16 46 46 H 1.09000 * 113.58131 * 270.13296 * 29 28 27 47 47 H 1.08999 * 113.65580 * 139.34498 * 29 28 27 48 48 H 1.08996 * 113.66552 * 265.09839 * 30 27 16 49 49 H 1.09001 * 113.66060 * 36.16135 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3490 1.5247 -0.0005 5 7 4.1508 0.4732 -0.0005 6 6 5.4634 0.6002 -0.0005 7 6 6.0625 1.8473 0.0000 8 6 5.2713 2.9821 -0.0050 9 6 3.8806 2.8228 0.0004 10 6 2.9901 3.9990 0.0004 11 8 1.7836 3.8481 -0.0001 12 7 3.5139 5.2408 0.0009 13 6 2.6295 6.4088 0.0003 14 1 1.6590 6.2072 0.4539 15 6 2.5390 7.1147 -1.3648 16 6 2.5813 8.4480 -0.5962 17 1 1.5971 8.8204 -0.3118 18 7 3.4139 9.4694 -1.2362 19 6 2.8273 10.5107 -1.9047 20 1 1.7509 10.5765 -1.9638 21 6 3.6160 11.4817 -2.5062 22 7 4.9279 11.4013 -2.4344 23 14 2.8158 12.9017 -3.4186 24 1 1.9541 13.6684 -2.4833 25 1 3.8687 13.7941 -3.9666 26 1 1.9885 12.3712 -4.5320 27 6 3.2963 7.6836 0.5186 28 6 3.1608 8.1082 1.9813 29 6 4.5714 7.5280 2.1901 30 6 4.8134 7.7692 0.6888 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5138 -0.8899 35 1 1.8932 -0.5138 0.8900 36 1 6.0819 -0.2852 -0.0009 37 1 7.1390 1.9342 0.0004 38 1 5.7156 3.9665 -0.0088 39 1 4.4764 5.3612 0.0009 40 1 1.5966 6.9405 -1.8841 41 1 3.4089 6.9502 -2.0006 42 1 4.3806 9.4104 -1.1830 43 1 5.4790 12.0797 -2.8550 44 1 3.1069 9.1879 2.1202 45 1 2.3822 7.5706 2.5226 46 1 4.5727 6.4741 2.4681 47 1 5.2033 8.1367 2.8368 48 1 5.3551 6.9608 0.1977 49 1 5.2239 8.7537 0.4646 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078796641.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:48 Heat of formation + Delta-G solvation = 23.205104 kcal Electronic energy + Delta-G solvation = -30507.818814 eV Core-core repulsion = 26437.289762 eV Total energy + Delta-G solvation = -4070.529053 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.17476 -40.45275 -38.55670 -38.19115 -34.90460 -34.16311 -33.17295 -32.25630 -32.11049 -30.33046 -29.67601 -25.56691 -25.36592 -24.65642 -24.22907 -23.74059 -22.51678 -22.19736 -20.41824 -20.38241 -18.96634 -18.26662 -17.43241 -17.20772 -16.80999 -16.52593 -15.89402 -15.39853 -15.22031 -15.02067 -14.69721 -14.53636 -14.20771 -14.09905 -13.89563 -13.47833 -13.02963 -12.89553 -12.83382 -12.60507 -12.57236 -12.42869 -12.11215 -11.84547 -11.70427 -11.51877 -11.30540 -11.00501 -10.98306 -10.79258 -10.73087 -10.26628 -10.25545 -10.23743 -10.10527 -9.96265 -9.76389 -9.60089 -9.38890 -8.84785 -8.82167 -8.60485 -6.96262 -5.80127 -3.08046 0.43230 0.94652 2.76976 2.86179 3.20122 3.43254 3.47904 3.48738 3.63903 3.96133 4.41402 4.53298 4.57535 4.67561 4.73638 4.81033 4.81292 4.89527 4.92494 5.00650 5.11423 5.13703 5.17053 5.28130 5.45408 5.46022 5.50982 5.63243 5.65140 5.71860 5.84002 5.88332 5.90793 5.99151 6.01843 6.04336 6.11761 6.16144 6.26240 6.31715 6.38843 6.59022 6.63709 6.75941 6.92426 7.03421 7.09185 7.44490 7.67357 7.69427 8.34758 8.39219 9.50642 10.07838 10.42895 11.42341 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.002502 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.066285 B =11190.214636 C =11682.222236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.268 6.268 4 C 0.373 3.627 5 N -0.548 5.548 6 C 0.163 3.837 7 C -0.221 4.221 8 C -0.009 4.009 9 C -0.207 4.207 10 C 0.561 3.439 11 O -0.519 6.519 12 N -0.709 5.709 13 C 0.148 3.852 14 H 0.111 0.889 15 C -0.174 4.174 16 C 0.182 3.818 17 H 0.079 0.921 18 N -0.707 5.707 19 C -0.241 4.241 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.934 5.934 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.286 1.286 27 C -0.123 4.123 28 C -0.122 4.122 29 C -0.141 4.141 30 C -0.108 4.108 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.164 0.836 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.395 0.605 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.086 0.914 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.055 0.945 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.875 -22.849 8.755 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.173 6.173 4 C 0.193 3.807 5 N -0.272 5.272 6 C 0.006 3.994 7 C -0.241 4.241 8 C -0.035 4.035 9 C -0.213 4.213 10 C 0.347 3.653 11 O -0.395 6.395 12 N -0.361 5.361 13 C 0.043 3.957 14 H 0.129 0.871 15 C -0.217 4.217 16 C 0.069 3.931 17 H 0.097 0.903 18 N -0.345 5.345 19 C -0.373 4.373 20 H 0.089 0.911 21 C -0.208 4.208 22 N -0.582 5.582 23 Si 0.738 3.262 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.126 4.126 28 C -0.159 4.159 29 C -0.178 4.178 30 C -0.146 4.146 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.181 0.819 37 H 0.162 0.838 38 H 0.162 0.838 39 H 0.232 0.768 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.221 0.779 43 H 0.065 0.935 44 H 0.105 0.895 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.073 0.927 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.250 -23.409 8.657 24.960 hybrid contribution 1.029 1.331 -0.627 1.796 sum 1.280 -22.078 8.030 23.528 Atomic orbital electron populations 1.21787 0.92766 1.02510 1.03856 1.22691 0.95276 0.81258 1.02195 1.86548 1.15474 1.29802 1.85427 1.19827 0.84718 0.88430 0.87721 1.67492 1.06640 1.32438 1.20627 1.22651 0.89178 0.97655 0.89910 1.21935 1.01792 0.92903 1.07466 1.21689 0.91273 1.00106 0.90399 1.20143 0.94307 0.92654 1.14217 1.17765 0.87786 0.82614 0.77163 1.90821 1.14126 1.85782 1.48777 1.45909 1.10293 1.05150 1.74784 1.22159 0.93787 0.81304 0.98430 0.87103 1.24294 1.01864 0.99526 0.95979 1.21146 0.94548 0.87264 0.90174 0.90300 1.42306 1.05307 1.25149 1.61755 1.19264 0.91670 1.00500 1.25837 0.91112 1.24734 0.95395 0.99226 1.01469 1.69642 1.02699 1.36477 1.49393 0.86268 0.77951 0.82259 0.79719 1.21245 1.21742 1.21255 1.23449 0.97101 0.96061 0.95961 1.22677 0.96526 1.01209 0.95514 1.22844 0.97739 1.00326 0.96890 1.22456 0.94339 1.02547 0.95233 0.91405 0.90479 0.91473 0.91672 0.91710 0.81911 0.83805 0.83804 0.76823 0.92097 0.90216 0.77894 0.93454 0.89525 0.92034 0.91052 0.91822 0.92656 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.15 0.38 -0.94 16 2 C 0.06 0.64 6.03 37.15 0.22 0.86 16 3 O -0.27 -3.82 8.22 -39.76 -0.33 -4.15 16 4 C 0.37 4.96 7.51 -16.61 -0.12 4.84 16 5 N -0.55 -6.12 9.21 -12.98 -0.12 -6.24 16 6 C 0.16 1.31 11.17 -17.49 -0.20 1.12 16 7 C -0.22 -1.62 10.09 -39.50 -0.40 -2.02 16 8 C -0.01 -0.08 9.64 -38.89 -0.37 -0.46 16 9 C -0.21 -2.65 5.90 -104.69 -0.62 -3.26 16 10 C 0.56 8.52 7.77 -12.48 -0.10 8.42 16 11 O -0.52 -9.69 14.84 -16.49 -0.24 -9.93 16 12 N -0.71 -9.65 5.26 -54.41 -0.29 -9.94 16 13 C 0.15 2.29 4.08 -67.48 -0.28 2.01 16 14 H 0.11 1.81 7.54 -51.93 -0.39 1.42 16 15 C -0.17 -3.12 7.68 -25.75 -0.20 -3.32 16 16 C 0.18 3.51 4.35 -67.48 -0.29 3.22 16 17 H 0.08 1.55 8.12 -51.93 -0.42 1.13 16 18 N -0.71 -16.97 5.34 -52.99 -0.28 -17.25 16 19 C -0.24 -6.55 9.98 -15.06 -0.15 -6.70 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 23 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 27 C -0.12 -1.92 1.06 -154.71 -0.16 -2.09 16 28 C -0.12 -1.74 7.84 -26.29 -0.21 -1.95 16 29 C -0.14 -1.78 8.08 -25.75 -0.21 -1.98 16 30 C -0.11 -1.57 6.77 -26.28 -0.18 -1.75 16 31 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 35 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 36 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 38 H 0.14 1.01 6.52 -52.48 -0.34 0.67 16 39 H 0.40 4.52 4.77 -40.82 -0.19 4.32 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.39 9.67 6.12 -40.82 -0.25 9.42 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.05 0.70 6.42 -51.93 -0.33 0.37 16 49 H 0.10 1.70 6.96 -51.93 -0.36 1.34 16 LS Contribution 398.70 15.07 6.01 6.01 Total: -1.00 -33.14 398.70 -9.85 -42.99 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -7.33 Total: 12.56 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -2.97 Total: -4.45 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.04 Total: -60.16 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.57 Total: -14.08 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.14 -9.85 -42.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078796641.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.199 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds