Wall clock time and date at job start Wed Apr 1 2020 05:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42903 * 109.47252 * 2 1 4 4 C 1.35434 * 116.99984 * 180.02562 * 3 2 1 5 5 N 1.32236 * 119.79873 * 359.97438 * 4 3 2 6 6 C 1.31877 * 121.79933 * 180.02562 * 5 4 3 7 7 C 1.38357 * 121.18608 * 0.02562 * 6 5 4 8 8 C 1.38339 * 119.45519 * 359.73962 * 7 6 5 9 9 C 1.39984 * 118.34947 * 0.50125 * 8 7 6 10 10 C 1.47528 * 120.59327 * 179.77863 * 9 8 7 11 11 O 1.21594 * 119.99634 * 179.71773 * 10 9 8 12 12 N 1.34770 * 120.00265 * 359.71778 * 10 9 8 13 13 C 1.46504 * 119.99827 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.94665 * 26.91031 * 13 12 10 15 15 C 1.53950 * 113.66645 * 255.49818 * 13 12 10 16 16 C 1.53950 * 87.29592 * 220.79793 * 15 13 12 17 17 H 1.09006 * 113.65941 * 270.17111 * 16 15 13 18 18 N 1.46499 * 113.66414 * 139.20642 * 16 15 13 19 19 C 1.36939 * 119.99933 * 104.77943 * 18 16 15 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 16 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 16 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47173 * 60.00435 * 23 21 19 25 25 H 1.48497 * 109.47172 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47132 * 300.00314 * 23 21 19 27 27 C 1.52914 * 86.78449 * 24.73365 * 16 15 13 28 28 C 1.52907 * 121.14350 * 209.38294 * 27 16 15 29 29 C 1.53946 * 86.78434 * 209.37620 * 28 27 16 30 30 C 1.52906 * 121.13637 * 100.81404 * 27 16 15 31 31 H 1.09010 * 109.46850 * 60.00013 * 1 2 3 32 32 H 1.08997 * 109.47501 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47438 * 300.00679 * 1 2 3 34 34 H 1.08998 * 109.47465 * 239.99877 * 2 1 3 35 35 H 1.09001 * 109.47037 * 119.99726 * 2 1 3 36 36 H 1.08001 * 119.41090 * 180.02562 * 6 5 4 37 37 H 1.08000 * 120.27217 * 179.97438 * 7 6 5 38 38 H 1.08003 * 120.82380 * 180.25473 * 8 7 6 39 39 H 0.96999 * 120.00018 * 0.02562 * 12 10 9 40 40 H 1.08998 * 113.57862 * 106.19494 * 15 13 12 41 41 H 1.08999 * 113.64870 * 335.40788 * 15 13 12 42 42 H 0.97001 * 119.99790 * 284.49917 * 18 16 15 43 43 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 44 44 H 1.09001 * 113.66043 * 323.84687 * 28 27 16 45 45 H 1.09000 * 113.66310 * 94.90448 * 28 27 16 46 46 H 1.09000 * 113.58131 * 270.13296 * 29 28 27 47 47 H 1.08999 * 113.65580 * 139.34498 * 29 28 27 48 48 H 1.08996 * 113.66552 * 265.09839 * 30 27 16 49 49 H 1.09001 * 113.66060 * 36.16135 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3490 1.5247 -0.0005 5 7 4.1508 0.4732 -0.0005 6 6 5.4634 0.6002 -0.0005 7 6 6.0625 1.8473 0.0000 8 6 5.2713 2.9821 -0.0050 9 6 3.8806 2.8228 0.0004 10 6 2.9901 3.9990 0.0004 11 8 1.7836 3.8481 -0.0001 12 7 3.5139 5.2408 0.0009 13 6 2.6295 6.4088 0.0003 14 1 1.6590 6.2072 0.4539 15 6 2.5390 7.1147 -1.3648 16 6 2.5813 8.4480 -0.5962 17 1 1.5971 8.8204 -0.3118 18 7 3.4139 9.4694 -1.2362 19 6 2.8273 10.5107 -1.9047 20 1 1.7509 10.5765 -1.9638 21 6 3.6160 11.4817 -2.5062 22 7 4.9279 11.4013 -2.4344 23 14 2.8158 12.9017 -3.4186 24 1 1.9541 13.6684 -2.4833 25 1 3.8687 13.7941 -3.9666 26 1 1.9885 12.3712 -4.5320 27 6 3.2963 7.6836 0.5186 28 6 3.1608 8.1082 1.9813 29 6 4.5714 7.5280 2.1901 30 6 4.8134 7.7692 0.6888 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5138 -0.8899 35 1 1.8932 -0.5138 0.8900 36 1 6.0819 -0.2852 -0.0009 37 1 7.1390 1.9342 0.0004 38 1 5.7156 3.9665 -0.0088 39 1 4.4764 5.3612 0.0009 40 1 1.5966 6.9405 -1.8841 41 1 3.4089 6.9502 -2.0006 42 1 4.3806 9.4104 -1.1830 43 1 5.4790 12.0797 -2.8550 44 1 3.1069 9.1879 2.1202 45 1 2.3822 7.5706 2.5226 46 1 4.5727 6.4741 2.4681 47 1 5.2033 8.1367 2.8368 48 1 5.3551 6.9608 0.1977 49 1 5.2239 8.7537 0.4646 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078796641.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:46 Heat of formation + Delta-G solvation = 1.577317 kcal Electronic energy + Delta-G solvation = -30508.756666 eV Core-core repulsion = 26437.289762 eV Total energy + Delta-G solvation = -4071.466904 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.17416 -41.58849 -39.71381 -39.02502 -36.38453 -35.62937 -34.45672 -33.34089 -32.99358 -31.69990 -30.91979 -26.81992 -26.70325 -25.79626 -25.38087 -24.98813 -23.55920 -23.28079 -21.75528 -21.56708 -19.91511 -19.43508 -19.18763 -18.17957 -17.95754 -17.37926 -17.19641 -16.56891 -16.33753 -16.27620 -15.88717 -15.78991 -15.60348 -14.94160 -14.90864 -14.74784 -14.58372 -14.03821 -13.88087 -13.54942 -13.45949 -13.33319 -13.31190 -13.15796 -13.10959 -12.83871 -12.78977 -12.48084 -12.36936 -12.25487 -12.11363 -11.82024 -11.75039 -11.36100 -11.27386 -11.08066 -11.04500 -11.02525 -10.63736 -10.57565 -9.97467 -9.53353 -8.93678 -7.93706 -5.20377 -0.35076 0.23179 1.47777 1.49660 1.55594 1.86020 1.99187 2.09022 2.57516 2.79765 3.24837 3.37005 3.42277 3.59809 3.67733 3.75841 3.78800 3.94379 3.96877 4.00036 4.04839 4.12822 4.15690 4.21554 4.32311 4.39404 4.47204 4.55541 4.64764 4.74164 4.77264 4.80464 4.87754 4.90592 4.96019 5.00486 5.07513 5.08208 5.13117 5.14766 5.17983 5.33176 5.42737 5.46902 5.52113 5.60164 5.71250 6.23776 6.29158 6.53048 6.74657 7.22575 7.36474 8.12568 8.38075 9.29097 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.002502 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.066285 B =11190.214636 C =11682.222236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 O -0.300 6.300 4 C 0.350 3.650 5 N -0.560 5.560 6 C 0.164 3.836 7 C -0.205 4.205 8 C -0.006 4.006 9 C -0.236 4.236 10 C 0.560 3.440 11 O -0.563 6.563 12 N -0.697 5.697 13 C 0.167 3.833 14 H 0.104 0.896 15 C -0.170 4.170 16 C 0.164 3.836 17 H 0.071 0.929 18 N -0.716 5.716 19 C -0.244 4.244 20 H 0.071 0.929 21 C -0.071 4.071 22 N -0.966 5.966 23 Si 0.968 3.032 24 H -0.279 1.279 25 H -0.295 1.295 26 H -0.282 1.282 27 C -0.113 4.113 28 C -0.124 4.124 29 C -0.121 4.121 30 C -0.110 4.110 31 H 0.055 0.945 32 H 0.106 0.894 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.203 0.797 37 H 0.184 0.816 38 H 0.167 0.833 39 H 0.408 0.592 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.379 0.621 43 H 0.251 0.749 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.653 -24.712 9.700 26.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 O -0.206 6.206 4 C 0.171 3.829 5 N -0.285 5.285 6 C 0.008 3.992 7 C -0.225 4.225 8 C -0.032 4.032 9 C -0.242 4.242 10 C 0.348 3.652 11 O -0.442 6.442 12 N -0.350 5.350 13 C 0.061 3.939 14 H 0.122 0.878 15 C -0.213 4.213 16 C 0.053 3.947 17 H 0.089 0.911 18 N -0.354 5.354 19 C -0.376 4.376 20 H 0.089 0.911 21 C -0.263 4.263 22 N -0.616 5.616 23 Si 0.797 3.203 24 H -0.205 1.205 25 H -0.221 1.221 26 H -0.209 1.209 27 C -0.115 4.115 28 C -0.161 4.161 29 C -0.158 4.158 30 C -0.147 4.147 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.219 0.781 37 H 0.202 0.798 38 H 0.184 0.816 39 H 0.247 0.753 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.213 0.787 43 H 0.060 0.940 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.110 0.890 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.026 -25.304 9.624 27.148 hybrid contribution 0.511 1.781 -0.921 2.069 sum 2.538 -23.523 8.704 25.210 Atomic orbital electron populations 1.21810 0.91876 1.04045 1.02745 1.22849 0.96010 0.80242 1.02540 1.86510 1.16649 1.31589 1.85833 1.20059 0.84716 0.89245 0.88916 1.67555 1.08005 1.31767 1.21167 1.23454 0.88374 0.99701 0.87709 1.22391 1.03544 0.91691 1.04862 1.22019 0.89775 1.02073 0.89314 1.20057 0.95498 0.91344 1.17289 1.18194 0.87627 0.83398 0.75953 1.90793 1.16161 1.86420 1.50874 1.45702 1.10643 1.04236 1.74380 1.21754 0.93976 0.81953 0.96220 0.87802 1.24144 1.01001 0.99098 0.97008 1.21383 0.94339 0.86841 0.92111 0.91074 1.42393 1.05324 1.25588 1.62145 1.19615 0.91863 1.01003 1.25074 0.91067 1.25454 0.95962 1.01811 1.03098 1.69781 1.03770 1.37249 1.50818 0.85299 0.76962 0.79425 0.78595 1.20530 1.22106 1.20867 1.23304 0.97893 0.94670 0.95681 1.22683 0.98443 1.00682 0.94312 1.22772 0.96110 1.01594 0.95347 1.22424 0.93178 1.01856 0.97271 0.92630 0.87576 0.92372 0.91391 0.91113 0.78057 0.79824 0.81604 0.75299 0.92990 0.91100 0.78678 0.94017 0.90896 0.90847 0.88966 0.90685 0.90535 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 10.28 71.98 0.74 -1.87 16 2 C 0.06 1.23 6.03 71.98 0.43 1.66 16 3 O -0.30 -8.83 8.22 -66.48 -0.55 -9.38 16 4 C 0.35 9.19 7.51 85.13 0.64 9.82 16 5 N -0.56 -11.56 9.21 -307.99 -2.84 -14.40 16 6 C 0.16 2.04 11.17 84.71 0.95 2.98 16 7 C -0.21 -2.10 10.09 22.32 0.23 -1.88 16 8 C -0.01 -0.09 9.64 22.72 0.22 0.13 16 9 C -0.24 -5.79 5.90 -19.91 -0.12 -5.91 16 10 C 0.56 16.93 7.77 86.69 0.67 17.60 16 11 O -0.56 -21.68 14.84 16.80 0.25 -21.43 16 12 N -0.70 -18.22 5.26 -444.31 -2.34 -20.56 16 13 C 0.17 5.12 4.08 45.28 0.18 5.30 16 14 H 0.10 3.42 7.54 -2.39 -0.02 3.41 16 15 C -0.17 -6.23 7.68 31.23 0.24 -5.99 16 16 C 0.16 6.49 4.35 45.28 0.20 6.69 16 17 H 0.07 2.89 8.12 -2.38 -0.02 2.87 16 18 N -0.72 -35.19 5.34 -321.55 -1.72 -36.91 16 19 C -0.24 -13.45 9.98 84.03 0.84 -12.61 16 20 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 21 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 22 N -0.97 -57.82 13.06 21.65 0.28 -57.53 16 23 Si 0.97 46.12 29.55 68.60 2.03 48.15 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 26 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 27 C -0.11 -3.48 1.06 -52.31 -0.06 -3.54 16 28 C -0.12 -3.39 7.84 30.88 0.24 -3.15 16 29 C -0.12 -2.75 8.08 31.23 0.25 -2.49 16 30 C -0.11 -3.05 6.77 30.89 0.21 -2.84 16 31 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 35 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 36 H 0.20 0.81 8.06 -2.91 -0.02 0.79 16 37 H 0.18 0.45 8.06 -2.91 -0.02 0.43 16 38 H 0.17 1.68 6.52 -2.91 -0.02 1.66 16 39 H 0.41 8.40 4.77 -92.71 -0.44 7.95 16 40 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 42 H 0.38 19.49 6.12 -92.71 -0.57 18.92 16 43 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.08 1.77 6.42 -2.39 -0.02 1.75 16 49 H 0.07 2.44 6.96 -2.39 -0.02 2.42 16 Total: -1.00 -75.27 398.70 1.43 -73.85 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: -0.03 Total: 37.86 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 6.33 Total: 0.36 kcal Atomic # 7 Polarization: -122.79 SS G_CDS: -6.61 Total: -129.40 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.30 Total: -30.81 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -75.27 1.43 -73.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078796641.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.423 kcal (2) G-P(sol) polarization free energy of solvation -75.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds