Wall clock time and date at job start Wed Apr 1 2020 05:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47446 * 2 1 4 4 C 1.35424 * 116.99986 * 179.97438 * 3 2 1 5 5 N 1.32226 * 119.80303 * 359.97438 * 4 3 2 6 6 C 1.31886 * 121.80645 * 179.97438 * 5 4 3 7 7 C 1.38355 * 121.17739 * 0.02562 * 6 5 4 8 8 C 1.38334 * 119.46302 * 0.02562 * 7 6 5 9 9 C 1.39982 * 118.34899 * 359.97438 * 8 7 6 10 10 C 1.47531 * 120.60155 * 180.27172 * 9 8 7 11 11 O 1.21580 * 120.00532 * 179.72231 * 10 9 8 12 12 N 1.34783 * 119.99449 * 359.71951 * 10 9 8 13 13 C 1.46496 * 119.99643 * 179.97438 * 12 10 9 14 14 H 1.08993 * 112.88791 * 23.65771 * 13 12 10 15 15 C 1.53952 * 113.66418 * 252.18910 * 13 12 10 16 16 C 1.53948 * 87.29513 * 220.79910 * 15 13 12 17 17 H 1.09004 * 113.66330 * 139.21119 * 16 15 13 18 18 N 1.46498 * 113.66136 * 270.25643 * 16 15 13 19 19 C 1.36932 * 120.00695 * 252.19022 * 18 16 15 20 20 H 1.08001 * 119.99370 * 359.97438 * 19 18 16 21 21 C 1.38809 * 120.00625 * 180.02562 * 19 18 16 22 22 N 1.31616 * 119.99764 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00290 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46965 * 90.00101 * 23 21 19 25 25 H 1.48494 * 109.46926 * 209.99752 * 23 21 19 26 26 H 1.48494 * 109.47006 * 330.00020 * 23 21 19 27 27 C 1.52904 * 86.78331 * 24.73319 * 16 15 13 28 28 C 1.52907 * 121.13869 * 100.82449 * 27 16 15 29 29 C 1.53950 * 86.78264 * 100.81595 * 28 27 16 30 30 C 1.52914 * 121.13356 * 209.38370 * 27 16 15 31 31 H 1.09001 * 109.47311 * 300.00427 * 1 2 3 32 32 H 1.09001 * 109.46468 * 60.00439 * 1 2 3 33 33 H 1.08994 * 109.47230 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47311 * 239.99573 * 2 1 3 35 35 H 1.09006 * 109.46888 * 119.99748 * 2 1 3 36 36 H 1.07991 * 119.41066 * 179.97438 * 6 5 4 37 37 H 1.08002 * 120.27116 * 180.02562 * 7 6 5 38 38 H 1.08007 * 120.82736 * 180.02562 * 8 7 6 39 39 H 0.96997 * 119.99902 * 0.02562 * 12 10 9 40 40 H 1.09003 * 113.57975 * 335.40025 * 15 13 12 41 41 H 1.08993 * 113.58037 * 106.19407 * 15 13 12 42 42 H 0.97006 * 119.99662 * 72.19277 * 18 16 15 43 43 H 0.97006 * 120.00047 * 180.02562 * 22 21 19 44 44 H 1.08999 * 113.66294 * 215.29293 * 28 27 16 45 45 H 1.09000 * 113.65994 * 346.34518 * 28 27 16 46 46 H 1.09000 * 113.57801 * 270.13013 * 29 28 27 47 47 H 1.08998 * 113.64781 * 139.35353 * 29 28 27 48 48 H 1.09000 * 113.66335 * 13.64852 * 30 27 16 49 49 H 1.09002 * 113.66253 * 144.61529 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3490 1.5246 0.0005 5 7 4.1508 0.4732 0.0015 6 6 5.4635 0.6001 0.0016 7 6 6.0625 1.8472 0.0011 8 6 5.2714 2.9820 0.0011 9 6 3.8807 2.8228 0.0011 10 6 2.9901 3.9989 -0.0050 11 8 1.7837 3.8480 -0.0101 12 7 3.5139 5.2408 -0.0048 13 6 2.6296 6.4087 -0.0113 14 1 1.6385 6.1922 0.3872 15 6 2.6070 7.1592 -1.3554 16 6 2.6095 8.4664 -0.5423 17 1 3.2513 9.2413 -0.9616 18 7 1.2689 8.9540 -0.2089 19 6 0.7667 10.0614 -0.8385 20 1 1.3592 10.5757 -1.5807 21 6 -0.5033 10.5237 -0.5222 22 7 -1.2252 9.8972 0.3826 23 14 -1.1880 12.0349 -1.3807 24 1 -1.9149 11.6204 -2.6076 25 1 -2.1212 12.7425 -0.4678 26 1 -0.0723 12.9428 -1.7493 27 6 3.2683 7.6653 0.5812 28 6 4.7749 7.7443 0.8303 29 6 4.4458 8.7075 1.9852 30 6 3.0591 8.0419 2.0484 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 6.0819 -0.2852 0.0029 37 1 7.1391 1.9342 0.0008 38 1 5.7158 3.9665 0.0003 39 1 4.4764 5.3612 -0.0010 40 1 3.5085 7.0143 -1.9508 41 1 1.6921 7.0028 -1.9267 42 1 0.7368 8.4922 0.4581 43 1 -2.1129 10.2200 0.6034 44 1 5.2141 6.8021 1.1580 45 1 5.3290 8.2110 0.0158 46 1 4.4135 9.7546 1.6840 47 1 5.0497 8.5427 2.8775 48 1 2.2425 8.7463 2.2071 49 1 3.0144 7.1833 2.7184 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078796642.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:52 Heat of formation + Delta-G solvation = 23.565358 kcal Electronic energy + Delta-G solvation = -30536.404112 eV Core-core repulsion = 26465.890681 eV Total energy + Delta-G solvation = -4070.513431 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.13184 -40.38912 -38.53173 -38.15969 -35.01842 -34.12041 -33.09547 -32.20124 -32.02550 -30.28322 -29.49857 -25.53056 -25.36285 -24.57858 -24.15745 -23.75418 -22.47607 -22.41436 -20.48310 -20.34512 -18.89174 -18.08950 -17.41944 -17.07392 -16.92636 -16.47877 -15.76844 -15.36725 -15.14030 -14.94217 -14.72957 -14.56309 -14.07033 -14.05054 -13.86672 -13.47570 -13.01145 -12.84970 -12.65566 -12.54890 -12.53409 -12.46779 -12.15201 -11.92391 -11.64507 -11.57893 -11.37049 -10.92992 -10.87852 -10.83189 -10.71817 -10.25181 -10.22369 -10.15830 -10.03589 -9.80607 -9.72896 -9.52687 -9.38993 -8.85498 -8.80156 -8.51083 -6.98513 -5.77654 -3.07425 0.45196 0.95091 2.81400 2.91178 3.26732 3.43970 3.48868 3.50701 3.67384 3.98142 4.39913 4.52419 4.55221 4.69472 4.78888 4.82582 4.87839 4.92022 4.97010 4.99798 5.15048 5.20709 5.22614 5.36919 5.47220 5.50660 5.51903 5.66696 5.71470 5.73324 5.80799 5.94361 5.95777 5.96842 6.02712 6.05888 6.08947 6.12548 6.25703 6.45465 6.59160 6.68718 6.73679 6.80976 6.89693 7.07683 7.11719 7.46638 7.70046 7.73598 8.40289 8.43699 9.51472 10.07775 10.42292 11.44307 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012934 B = 0.002783 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.265070 B =10057.373337 C =11575.305120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.267 6.267 4 C 0.374 3.626 5 N -0.547 5.547 6 C 0.162 3.838 7 C -0.223 4.223 8 C -0.010 4.010 9 C -0.206 4.206 10 C 0.557 3.443 11 O -0.511 6.511 12 N -0.712 5.712 13 C 0.142 3.858 14 H 0.115 0.885 15 C -0.182 4.182 16 C 0.198 3.802 17 H 0.068 0.932 18 N -0.700 5.700 19 C -0.244 4.244 20 H 0.072 0.928 21 C -0.010 4.010 22 N -0.929 5.929 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.125 4.125 28 C -0.116 4.116 29 C -0.133 4.133 30 C -0.125 4.125 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.163 0.837 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.392 0.608 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.387 0.613 43 H 0.256 0.744 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.058 0.942 48 H 0.083 0.917 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.594 -18.607 1.176 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.171 6.171 4 C 0.193 3.807 5 N -0.272 5.272 6 C 0.005 3.995 7 C -0.243 4.243 8 C -0.036 4.036 9 C -0.212 4.212 10 C 0.342 3.658 11 O -0.386 6.386 12 N -0.364 5.364 13 C 0.038 3.962 14 H 0.133 0.867 15 C -0.225 4.225 16 C 0.084 3.916 17 H 0.086 0.914 18 N -0.338 5.338 19 C -0.375 4.375 20 H 0.090 0.910 21 C -0.206 4.206 22 N -0.576 5.576 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.127 4.127 28 C -0.153 4.153 29 C -0.170 4.170 30 C -0.163 4.163 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.180 0.820 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.227 0.773 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.222 0.778 43 H 0.066 0.934 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.100 0.900 47 H 0.077 0.923 48 H 0.101 0.899 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 15.952 -19.155 1.093 24.951 hybrid contribution 0.426 1.116 -0.264 1.223 sum 16.378 -18.039 0.828 24.379 Atomic orbital electron populations 1.21796 0.92674 1.02506 1.04038 1.22701 0.95373 0.81171 1.02122 1.86568 1.15390 1.29870 1.85259 1.19856 0.84780 0.88442 0.87577 1.67494 1.06620 1.32485 1.20581 1.22640 0.89207 0.97623 0.90016 1.21906 1.01656 0.92953 1.07782 1.21646 0.91259 0.99957 0.90746 1.20195 0.94321 0.92753 1.13916 1.17797 0.87853 0.82667 0.77438 1.90862 1.14091 1.85640 1.48047 1.45938 1.09961 1.05389 1.75094 1.22418 0.94505 0.81419 0.97877 0.86708 1.24307 1.01518 1.00017 0.96639 1.20619 0.88146 0.91914 0.90886 0.91392 1.42110 1.12014 1.32220 1.47433 1.19240 0.98253 1.03201 1.16814 0.91010 1.24761 0.97113 0.99450 0.99301 1.69668 1.11489 1.41642 1.34795 0.86187 0.78708 0.82568 0.78676 1.21675 1.21785 1.20740 1.23630 0.95704 0.96756 0.96649 1.22524 0.94720 0.99213 0.98888 1.22731 0.97440 0.99217 0.97634 1.22629 0.97975 1.00329 0.95374 0.91349 0.91345 0.90478 0.91706 0.91708 0.81971 0.83926 0.83916 0.77324 0.91294 0.90882 0.77821 0.93385 0.90888 0.91394 0.90034 0.92313 0.89873 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.28 37.16 0.38 -1.14 16 2 C 0.06 0.70 6.03 37.16 0.22 0.92 16 3 O -0.27 -4.06 8.22 -39.73 -0.33 -4.39 16 4 C 0.37 5.16 7.51 -16.61 -0.12 5.04 16 5 N -0.55 -6.26 9.21 -12.99 -0.12 -6.38 16 6 C 0.16 1.30 11.17 -17.49 -0.20 1.10 16 7 C -0.22 -1.55 10.09 -39.50 -0.40 -1.95 16 8 C -0.01 -0.09 9.64 -38.89 -0.37 -0.46 16 9 C -0.21 -2.69 5.90 -104.69 -0.62 -3.30 16 10 C 0.56 8.96 7.77 -12.47 -0.10 8.86 16 11 O -0.51 -10.50 14.79 -16.48 -0.24 -10.75 16 12 N -0.71 -9.92 5.20 -54.42 -0.28 -10.21 16 13 C 0.14 2.41 4.04 -67.48 -0.27 2.13 16 14 H 0.12 2.38 7.46 -51.93 -0.39 1.99 16 15 C -0.18 -3.26 7.68 -25.75 -0.20 -3.46 16 16 C 0.20 3.83 4.36 -67.49 -0.29 3.54 16 17 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 18 N -0.70 -17.20 4.85 -53.00 -0.26 -17.46 16 19 C -0.24 -6.67 9.97 -15.06 -0.15 -6.82 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 22 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 23 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 27 C -0.12 -1.97 0.92 -154.71 -0.14 -2.11 16 28 C -0.12 -1.40 7.15 -26.28 -0.19 -1.59 16 29 C -0.13 -1.77 8.08 -25.75 -0.21 -1.98 16 30 C -0.13 -2.02 7.62 -26.28 -0.20 -2.22 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 35 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.16 0.72 8.06 -52.49 -0.42 0.29 16 37 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 38 H 0.14 0.86 6.52 -52.48 -0.34 0.52 16 39 H 0.39 4.13 5.14 -40.82 -0.21 3.92 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.39 10.28 7.62 -40.82 -0.31 9.97 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.07 0.73 7.03 -51.93 -0.36 0.37 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 49 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 401.09 15.07 6.04 6.04 Total: -1.00 -34.01 401.09 -9.90 -43.92 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -7.47 Total: 13.02 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -2.95 Total: -3.83 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: 0.06 Total: -61.31 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.57 Total: -15.14 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.01 -9.90 -43.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078796642.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.484 kcal (2) G-P(sol) polarization free energy of solvation -34.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds