Wall clock time and date at job start Wed Apr 1 2020 05:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47446 * 2 1 4 4 C 1.35424 * 116.99986 * 179.97438 * 3 2 1 5 5 N 1.32226 * 119.80303 * 359.97438 * 4 3 2 6 6 C 1.31886 * 121.80645 * 179.97438 * 5 4 3 7 7 C 1.38355 * 121.17739 * 0.02562 * 6 5 4 8 8 C 1.38334 * 119.46302 * 0.02562 * 7 6 5 9 9 C 1.39982 * 118.34899 * 359.97438 * 8 7 6 10 10 C 1.47531 * 120.60155 * 180.27172 * 9 8 7 11 11 O 1.21580 * 120.00532 * 179.72231 * 10 9 8 12 12 N 1.34783 * 119.99449 * 359.71951 * 10 9 8 13 13 C 1.46496 * 119.99643 * 179.97438 * 12 10 9 14 14 H 1.08993 * 112.88791 * 23.65771 * 13 12 10 15 15 C 1.53952 * 113.66418 * 252.18910 * 13 12 10 16 16 C 1.53948 * 87.29513 * 220.79910 * 15 13 12 17 17 H 1.09004 * 113.66330 * 139.21119 * 16 15 13 18 18 N 1.46498 * 113.66136 * 270.25643 * 16 15 13 19 19 C 1.36932 * 120.00695 * 252.19022 * 18 16 15 20 20 H 1.08001 * 119.99370 * 359.97438 * 19 18 16 21 21 C 1.38809 * 120.00625 * 180.02562 * 19 18 16 22 22 N 1.31616 * 119.99764 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00290 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46965 * 90.00101 * 23 21 19 25 25 H 1.48494 * 109.46926 * 209.99752 * 23 21 19 26 26 H 1.48494 * 109.47006 * 330.00020 * 23 21 19 27 27 C 1.52904 * 86.78331 * 24.73319 * 16 15 13 28 28 C 1.52907 * 121.13869 * 100.82449 * 27 16 15 29 29 C 1.53950 * 86.78264 * 100.81595 * 28 27 16 30 30 C 1.52914 * 121.13356 * 209.38370 * 27 16 15 31 31 H 1.09001 * 109.47311 * 300.00427 * 1 2 3 32 32 H 1.09001 * 109.46468 * 60.00439 * 1 2 3 33 33 H 1.08994 * 109.47230 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47311 * 239.99573 * 2 1 3 35 35 H 1.09006 * 109.46888 * 119.99748 * 2 1 3 36 36 H 1.07991 * 119.41066 * 179.97438 * 6 5 4 37 37 H 1.08002 * 120.27116 * 180.02562 * 7 6 5 38 38 H 1.08007 * 120.82736 * 180.02562 * 8 7 6 39 39 H 0.96997 * 119.99902 * 0.02562 * 12 10 9 40 40 H 1.09003 * 113.57975 * 335.40025 * 15 13 12 41 41 H 1.08993 * 113.58037 * 106.19407 * 15 13 12 42 42 H 0.97006 * 119.99662 * 72.19277 * 18 16 15 43 43 H 0.97006 * 120.00047 * 180.02562 * 22 21 19 44 44 H 1.08999 * 113.66294 * 215.29293 * 28 27 16 45 45 H 1.09000 * 113.65994 * 346.34518 * 28 27 16 46 46 H 1.09000 * 113.57801 * 270.13013 * 29 28 27 47 47 H 1.08998 * 113.64781 * 139.35353 * 29 28 27 48 48 H 1.09000 * 113.66335 * 13.64852 * 30 27 16 49 49 H 1.09002 * 113.66253 * 144.61529 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3490 1.5246 0.0005 5 7 4.1508 0.4732 0.0015 6 6 5.4635 0.6001 0.0016 7 6 6.0625 1.8472 0.0011 8 6 5.2714 2.9820 0.0011 9 6 3.8807 2.8228 0.0011 10 6 2.9901 3.9989 -0.0050 11 8 1.7837 3.8480 -0.0101 12 7 3.5139 5.2408 -0.0048 13 6 2.6296 6.4087 -0.0113 14 1 1.6385 6.1922 0.3872 15 6 2.6070 7.1592 -1.3554 16 6 2.6095 8.4664 -0.5423 17 1 3.2513 9.2413 -0.9616 18 7 1.2689 8.9540 -0.2089 19 6 0.7667 10.0614 -0.8385 20 1 1.3592 10.5757 -1.5807 21 6 -0.5033 10.5237 -0.5222 22 7 -1.2252 9.8972 0.3826 23 14 -1.1880 12.0349 -1.3807 24 1 -1.9149 11.6204 -2.6076 25 1 -2.1212 12.7425 -0.4678 26 1 -0.0723 12.9428 -1.7493 27 6 3.2683 7.6653 0.5812 28 6 4.7749 7.7443 0.8303 29 6 4.4458 8.7075 1.9852 30 6 3.0591 8.0419 2.0484 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 6.0819 -0.2852 0.0029 37 1 7.1391 1.9342 0.0008 38 1 5.7158 3.9665 0.0003 39 1 4.4764 5.3612 -0.0010 40 1 3.5085 7.0143 -1.9508 41 1 1.6921 7.0028 -1.9267 42 1 0.7368 8.4922 0.4581 43 1 -2.1129 10.2200 0.6034 44 1 5.2141 6.8021 1.1580 45 1 5.3290 8.2110 0.0158 46 1 4.4135 9.7546 1.6840 47 1 5.0497 8.5427 2.8775 48 1 2.2425 8.7463 2.2071 49 1 3.0144 7.1833 2.7184 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078796642.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:51 Heat of formation + Delta-G solvation = -0.189007 kcal Electronic energy + Delta-G solvation = -30537.434179 eV Core-core repulsion = 26465.890681 eV Total energy + Delta-G solvation = -4071.543497 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.13764 -41.57413 -39.75163 -39.03242 -36.48656 -35.66528 -34.39387 -33.31824 -33.00843 -31.57247 -30.89540 -26.75161 -26.68017 -25.73888 -25.45141 -25.00188 -23.82418 -23.29192 -21.69031 -21.67684 -19.84985 -19.42535 -18.99862 -18.30003 -18.01412 -17.39307 -16.99445 -16.67036 -16.30744 -16.18764 -15.87513 -15.82014 -15.60475 -14.99627 -14.90371 -14.82192 -14.40763 -14.11414 -13.85833 -13.56625 -13.50857 -13.35802 -13.33370 -13.27309 -13.09529 -12.82541 -12.67847 -12.60140 -12.49447 -12.19241 -11.98105 -11.78628 -11.77290 -11.32530 -11.26911 -11.07336 -11.03680 -10.90141 -10.74392 -10.55112 -9.91182 -9.51806 -9.01646 -7.95084 -5.24485 -0.33443 0.25009 1.45849 1.48309 1.56437 1.87547 2.00766 2.11473 2.54298 2.81117 3.25501 3.36327 3.42486 3.56257 3.69938 3.77213 3.81822 3.97053 3.99337 4.01557 4.04503 4.11284 4.19580 4.21666 4.24923 4.36160 4.50691 4.59891 4.66462 4.76598 4.79901 4.85217 4.86654 4.89595 4.91408 5.06190 5.08733 5.12906 5.15109 5.16025 5.26066 5.32647 5.43303 5.46976 5.52959 5.61937 5.74772 6.24651 6.26505 6.57252 6.76668 7.28796 7.31507 8.07818 8.30048 9.28399 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012934 B = 0.002783 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.265070 B =10057.373337 C =11575.305120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.305 6.305 4 C 0.346 3.654 5 N -0.562 5.562 6 C 0.161 3.839 7 C -0.202 4.202 8 C -0.002 4.002 9 C -0.236 4.236 10 C 0.553 3.447 11 O -0.572 6.572 12 N -0.692 5.692 13 C 0.148 3.852 14 H 0.065 0.935 15 C -0.172 4.172 16 C 0.181 3.819 17 H 0.077 0.923 18 N -0.716 5.716 19 C -0.240 4.240 20 H 0.082 0.918 21 C -0.078 4.078 22 N -0.971 5.971 23 Si 0.974 3.026 24 H -0.291 1.291 25 H -0.297 1.297 26 H -0.264 1.264 27 C -0.114 4.114 28 C -0.093 4.093 29 C -0.123 4.123 30 C -0.137 4.137 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.108 0.892 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.203 0.797 37 H 0.190 0.810 38 H 0.176 0.824 39 H 0.413 0.587 40 H 0.106 0.894 41 H 0.033 0.967 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.108 0.892 45 H 0.091 0.909 46 H 0.070 0.930 47 H 0.086 0.914 48 H 0.039 0.961 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.135 -19.449 0.651 30.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.211 6.211 4 C 0.167 3.833 5 N -0.287 5.287 6 C 0.005 3.995 7 C -0.222 4.222 8 C -0.027 4.027 9 C -0.242 4.242 10 C 0.341 3.659 11 O -0.452 6.452 12 N -0.344 5.344 13 C 0.043 3.957 14 H 0.083 0.917 15 C -0.214 4.214 16 C 0.069 3.931 17 H 0.095 0.905 18 N -0.353 5.353 19 C -0.371 4.371 20 H 0.100 0.900 21 C -0.270 4.270 22 N -0.622 5.622 23 Si 0.803 3.197 24 H -0.218 1.218 25 H -0.224 1.224 26 H -0.188 1.188 27 C -0.116 4.116 28 C -0.131 4.131 29 C -0.161 4.161 30 C -0.175 4.175 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.127 0.873 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.219 0.781 37 H 0.207 0.793 38 H 0.194 0.806 39 H 0.253 0.747 40 H 0.124 0.876 41 H 0.052 0.948 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.126 0.874 45 H 0.109 0.891 46 H 0.089 0.911 47 H 0.104 0.896 48 H 0.058 0.942 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 21.612 -19.998 0.540 29.450 hybrid contribution -1.153 1.239 -0.105 1.696 sum 20.459 -18.759 0.435 27.761 Atomic orbital electron populations 1.21824 0.92255 1.04050 1.02534 1.22829 0.95757 0.80266 1.02622 1.86530 1.17073 1.31612 1.85854 1.20128 0.84583 0.89510 0.89129 1.67545 1.08187 1.31721 1.21208 1.23499 0.88236 0.99993 0.87786 1.22421 1.03665 0.91467 1.04633 1.22064 0.89154 1.02435 0.89078 1.20075 0.95791 0.90926 1.17394 1.18392 0.87614 0.83878 0.76027 1.90833 1.16956 1.86520 1.50870 1.45609 1.10552 1.03903 1.74380 1.21916 0.93369 0.83110 0.97304 0.91727 1.24196 1.01329 0.99056 0.96774 1.20890 0.86177 0.92736 0.93254 0.90519 1.42272 1.14097 1.31804 1.47085 1.19686 0.98216 1.03266 1.15961 0.90027 1.25607 0.97866 1.02801 1.00691 1.69850 1.11605 1.43647 1.37081 0.85123 0.78112 0.79308 0.77118 1.21802 1.22420 1.18829 1.23480 0.98943 0.93988 0.95211 1.22574 0.91156 1.00580 0.98777 1.22680 0.95195 0.98709 0.99486 1.22678 0.98795 1.00161 0.95819 0.92778 0.92838 0.87336 0.91102 0.91055 0.78061 0.79279 0.80633 0.74737 0.87565 0.94773 0.79699 0.94148 0.87408 0.89079 0.91114 0.89559 0.94200 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 10.28 71.98 0.74 -2.48 16 2 C 0.06 1.43 6.03 71.98 0.43 1.87 16 3 O -0.31 -9.97 8.22 -66.37 -0.55 -10.51 16 4 C 0.35 9.62 7.51 85.13 0.64 10.26 16 5 N -0.56 -11.97 9.21 -308.01 -2.84 -14.80 16 6 C 0.16 1.91 11.17 84.71 0.95 2.85 16 7 C -0.20 -1.68 10.09 22.32 0.23 -1.46 16 8 C 0.00 -0.02 9.64 22.72 0.22 0.20 16 9 C -0.24 -5.95 5.90 -19.91 -0.12 -6.07 16 10 C 0.55 18.22 7.77 86.69 0.67 18.89 16 11 O -0.57 -25.54 14.79 16.85 0.25 -25.29 16 12 N -0.69 -18.52 5.20 -444.34 -2.31 -20.83 16 13 C 0.15 5.17 4.04 45.28 0.18 5.35 16 14 H 0.06 2.95 7.46 -2.39 -0.02 2.93 16 15 C -0.17 -6.19 7.68 31.23 0.24 -5.95 16 16 C 0.18 7.05 4.36 45.28 0.20 7.25 16 17 H 0.08 2.85 8.10 -2.39 -0.02 2.83 16 18 N -0.72 -37.00 4.85 -321.58 -1.56 -38.56 16 19 C -0.24 -13.48 9.97 84.03 0.84 -12.64 16 20 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 21 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 22 N -0.97 -61.79 13.06 21.65 0.28 -61.51 16 23 Si 0.97 47.20 29.55 68.60 2.03 49.23 16 24 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 26 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 27 C -0.11 -3.51 0.92 -52.32 -0.05 -3.55 16 28 C -0.09 -1.84 7.15 30.88 0.22 -1.62 16 29 C -0.12 -2.94 8.08 31.23 0.25 -2.68 16 30 C -0.14 -4.42 7.62 30.89 0.24 -4.19 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.53 8.11 -2.39 -0.02 1.51 16 35 H 0.07 1.53 8.10 -2.38 -0.02 1.52 16 36 H 0.20 0.68 8.06 -2.92 -0.02 0.65 16 37 H 0.19 -0.10 8.06 -2.91 -0.02 -0.12 16 38 H 0.18 1.04 6.52 -2.91 -0.02 1.02 16 39 H 0.41 7.08 5.14 -92.71 -0.48 6.60 16 40 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 41 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.37 21.30 7.62 -92.70 -0.71 20.60 16 43 H 0.25 15.45 8.31 -92.70 -0.77 14.68 16 44 H 0.11 1.46 7.03 -2.39 -0.02 1.44 16 45 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.04 1.63 7.58 -2.39 -0.02 1.61 16 49 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -84.68 401.09 1.44 -83.24 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: -0.21 Total: 37.12 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 6.34 Total: 1.93 kcal Atomic # 7 Polarization: -129.28 SS G_CDS: -6.42 Total: -135.70 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.30 Total: -35.81 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -84.68 1.44 -83.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078796642.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.051 kcal (2) G-P(sol) polarization free energy of solvation -84.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds