Wall clock time and date at job start Wed Apr 1 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42895 * 109.47260 * 2 1 4 4 C 1.35643 * 116.99993 * 179.97438 * 3 2 1 5 5 C 1.39346 * 120.54375 * 0.02765 * 4 3 2 6 6 C 1.38299 * 118.44059 * 179.97438 * 5 4 3 7 7 C 1.38765 * 119.44499 * 359.97438 * 6 5 4 8 8 N 1.31369 * 121.06868 * 359.72281 * 7 6 5 9 9 C 1.32858 * 121.69630 * 0.56599 * 8 7 6 10 10 C 1.47830 * 119.78559 * 179.70821 * 9 8 7 11 11 O 1.21555 * 119.99977 * 179.72441 * 10 9 8 12 12 N 1.34775 * 120.00087 * 359.73468 * 10 9 8 13 13 C 1.46499 * 120.00425 * 179.97438 * 12 10 9 14 14 H 1.09003 * 112.94371 * 336.39941 * 13 12 10 15 15 C 1.53947 * 113.66623 * 107.80773 * 13 12 10 16 16 C 1.53940 * 87.29448 * 139.20809 * 15 13 12 17 17 H 1.09004 * 113.66349 * 220.79405 * 16 15 13 18 18 N 1.46501 * 113.66388 * 89.74299 * 16 15 13 19 19 C 1.36934 * 120.00217 * 107.81275 * 18 16 15 20 20 H 1.08001 * 120.00144 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99806 * 179.97438 * 19 18 16 22 22 N 1.31611 * 120.00389 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99972 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46965 * 59.99917 * 23 21 19 25 25 H 1.48497 * 109.47508 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46990 * 300.00372 * 23 21 19 27 27 C 1.52905 * 86.78782 * 335.26706 * 16 15 13 28 28 C 1.52904 * 121.14213 * 150.61642 * 27 16 15 29 29 C 1.53957 * 86.78105 * 100.82198 * 28 27 16 30 30 C 1.52914 * 121.13770 * 259.18710 * 27 16 15 31 31 H 1.08995 * 109.47219 * 59.99910 * 1 2 3 32 32 H 1.09000 * 109.46962 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46917 * 299.99962 * 1 2 3 34 34 H 1.08997 * 109.46917 * 240.00037 * 2 1 3 35 35 H 1.09005 * 109.47169 * 120.00169 * 2 1 3 36 36 H 1.08002 * 120.77534 * 359.94712 * 5 4 3 37 37 H 1.07999 * 120.27600 * 180.02562 * 6 5 4 38 38 H 1.08010 * 119.46221 * 179.97438 * 7 6 5 39 39 H 0.97005 * 119.99572 * 359.97438 * 12 10 9 40 40 H 1.09003 * 113.57959 * 24.60328 * 15 13 12 41 41 H 1.09003 * 113.57772 * 253.81080 * 15 13 12 42 42 H 0.97002 * 119.99483 * 287.80730 * 18 16 15 43 43 H 0.97002 * 120.00418 * 180.02562 * 22 21 19 44 44 H 1.09003 * 113.66244 * 346.35405 * 28 27 16 45 45 H 1.08997 * 113.66842 * 215.29629 * 28 27 16 46 46 H 1.08998 * 113.57948 * 139.33665 * 29 28 27 47 47 H 1.09000 * 113.57875 * 270.13309 * 29 28 27 48 48 H 1.08993 * 113.66382 * 144.70253 * 30 27 16 49 49 H 1.08992 * 113.66018 * 13.64281 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3511 1.5249 0.0005 5 6 4.2104 0.4279 0.0005 6 6 5.5739 0.6593 0.0005 7 6 6.0443 1.9648 0.0000 8 7 5.2155 2.9840 -0.0059 9 6 3.8980 2.8125 -0.0005 10 6 3.0041 3.9899 -0.0009 11 8 1.7982 3.8375 -0.0011 12 7 3.5263 5.2324 -0.0014 13 6 2.6406 6.3993 -0.0025 14 1 1.6511 6.1814 -0.4046 15 6 2.6098 7.1530 1.3395 16 6 2.6149 8.4582 0.5232 17 1 3.2536 9.2349 0.9440 18 7 1.2755 8.9432 0.1815 19 6 0.7686 10.0516 0.8057 20 1 1.3562 10.5680 1.5503 21 6 -0.5003 10.5114 0.4814 22 7 -1.2162 9.8824 -0.4264 23 14 -1.1920 12.0230 1.3334 24 1 -0.3098 13.1878 1.0684 25 1 -2.5541 12.3047 0.8133 26 1 -1.2622 11.7780 2.7964 27 6 3.2807 7.6552 -0.5948 28 6 3.0789 8.0278 -2.0640 29 6 4.4645 8.6955 -1.9950 30 6 4.7886 7.7355 -0.8359 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.8206 -0.5793 0.0009 37 1 6.2667 -0.1692 0.0001 38 1 7.1091 2.1458 0.0005 39 1 4.4887 5.3540 -0.0011 40 1 3.5083 7.0108 1.9401 41 1 1.6920 6.9968 1.9064 42 1 0.7476 8.4791 -0.4871 43 1 -2.1028 10.2039 -0.6533 44 1 2.2624 8.7308 -2.2289 45 1 3.0406 7.1676 -2.7323 46 1 5.0738 8.5280 -2.8831 47 1 4.4292 9.7432 -1.6966 48 1 5.2308 6.7931 -1.1589 49 1 5.3377 8.2049 -0.0197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078837620.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:23 Heat of formation + Delta-G solvation = 23.459655 kcal Electronic energy + Delta-G solvation = -30529.213128 eV Core-core repulsion = 26458.695113 eV Total energy + Delta-G solvation = -4070.518015 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.14286 -40.30653 -38.63565 -38.25589 -34.93231 -33.95417 -32.83317 -32.34369 -31.99608 -30.25925 -29.46358 -25.52077 -25.39278 -24.70801 -24.06530 -23.76781 -22.53015 -22.28847 -20.45697 -20.23344 -18.74424 -18.05357 -17.52686 -17.05644 -16.85638 -16.50962 -15.74846 -15.49640 -15.06279 -14.89201 -14.79660 -14.61916 -14.14986 -13.79549 -13.70243 -13.65402 -12.98190 -12.90336 -12.81728 -12.61940 -12.54277 -12.38315 -12.04469 -11.82212 -11.59239 -11.51379 -11.27476 -11.19973 -10.83458 -10.77595 -10.62548 -10.24597 -10.15341 -10.14925 -9.95631 -9.72080 -9.68798 -9.45713 -9.33476 -8.80088 -8.74236 -8.38685 -6.93566 -5.73434 -3.02810 0.44204 0.92153 2.79795 2.82799 3.32750 3.47211 3.51531 3.52615 3.74781 4.07141 4.25619 4.40786 4.57704 4.60582 4.63083 4.73788 4.83472 4.89212 4.90555 5.02665 5.09964 5.19869 5.29637 5.36253 5.43842 5.54477 5.56980 5.57945 5.60743 5.76937 5.88522 5.92644 6.02316 6.05325 6.08967 6.11320 6.15927 6.23314 6.35732 6.54410 6.67112 6.78454 6.83589 6.89624 6.96553 6.98476 7.19589 7.46505 7.74167 7.91999 8.44768 8.53103 9.55707 10.12745 10.47544 11.48596 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012881 B = 0.002797 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.291869 B =10007.258594 C =11536.610830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.268 6.268 4 C 0.139 3.861 5 C -0.178 4.178 6 C -0.110 4.110 7 C 0.055 3.945 8 N -0.420 5.420 9 C 0.048 3.952 10 C 0.565 3.435 11 O -0.513 6.513 12 N -0.697 5.697 13 C 0.139 3.861 14 H 0.114 0.886 15 C -0.182 4.182 16 C 0.197 3.803 17 H 0.068 0.932 18 N -0.700 5.700 19 C -0.243 4.243 20 H 0.071 0.929 21 C -0.010 4.010 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.124 4.124 28 C -0.125 4.125 29 C -0.133 4.133 30 C -0.115 4.115 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.164 0.836 39 H 0.404 0.596 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.387 0.613 43 H 0.256 0.744 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.058 0.942 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.851 -22.110 -1.036 27.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.178 6.178 4 C 0.088 3.912 5 C -0.205 4.205 6 C -0.130 4.130 7 C -0.106 4.106 8 N -0.132 5.132 9 C -0.092 4.092 10 C 0.348 3.652 11 O -0.388 6.388 12 N -0.348 5.348 13 C 0.035 3.965 14 H 0.132 0.868 15 C -0.224 4.224 16 C 0.084 3.916 17 H 0.086 0.914 18 N -0.338 5.338 19 C -0.374 4.374 20 H 0.089 0.911 21 C -0.207 4.207 22 N -0.577 5.577 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.126 4.126 28 C -0.163 4.163 29 C -0.171 4.171 30 C -0.153 4.153 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.182 0.818 39 H 0.240 0.760 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.222 0.778 43 H 0.066 0.934 44 H 0.101 0.899 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.099 0.901 48 H 0.095 0.905 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.956 -21.013 -0.961 25.810 hybrid contribution -0.233 -0.701 0.268 0.785 sum 14.723 -21.713 -0.693 26.243 Atomic orbital electron populations 1.21746 0.92057 1.02595 1.04442 1.22954 0.96909 0.81965 1.01048 1.86467 1.16702 1.28641 1.86020 1.20049 0.84391 0.93749 0.92984 1.21754 0.94186 0.98729 1.05820 1.22182 0.95237 0.98910 0.96710 1.22688 0.99900 0.87864 1.00156 1.67623 1.01812 1.35536 1.08214 1.20892 0.90278 0.91473 1.06536 1.17643 0.87117 0.82634 0.77761 1.90862 1.13605 1.85440 1.48850 1.45874 1.10844 1.04814 1.73234 1.22441 0.94454 0.81679 0.97956 0.86817 1.24295 1.01513 0.99956 0.96636 1.20627 0.88054 0.91950 0.90961 0.91393 1.42103 1.12248 1.32073 1.47366 1.19210 0.98312 1.03131 1.16746 0.91061 1.24751 0.97138 0.99431 0.99343 1.69655 1.11807 1.41604 1.34652 0.86265 0.78072 0.82827 0.78972 1.21260 1.21737 1.21251 1.23608 0.95859 0.96625 0.96540 1.22623 0.97950 1.00274 0.95414 1.22738 0.97423 0.99182 0.97719 1.22532 0.94604 0.99400 0.98759 0.91077 0.90436 0.91066 0.92010 0.92005 0.83779 0.84064 0.81845 0.75953 0.91213 0.90937 0.77834 0.93379 0.89927 0.91149 0.92358 0.90107 0.90506 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.16 0.38 -0.89 16 2 C 0.05 0.41 5.48 37.16 0.20 0.61 16 3 O -0.27 -3.68 8.20 -40.58 -0.33 -4.02 16 4 C 0.14 1.77 6.71 -38.55 -0.26 1.51 16 5 C -0.18 -1.53 9.13 -39.15 -0.36 -1.89 16 6 C -0.11 -0.77 10.10 -39.36 -0.40 -1.17 16 7 C 0.05 0.46 11.17 -17.55 -0.20 0.27 16 8 N -0.42 -5.05 9.54 -9.71 -0.09 -5.15 16 9 C 0.05 0.68 6.76 -82.88 -0.56 0.12 16 10 C 0.56 9.83 7.80 -12.34 -0.10 9.73 16 11 O -0.51 -10.74 14.74 -16.63 -0.25 -10.99 16 12 N -0.70 -11.14 5.24 -54.32 -0.28 -11.42 16 13 C 0.14 2.52 4.03 -67.48 -0.27 2.25 16 14 H 0.11 2.44 7.46 -51.93 -0.39 2.06 16 15 C -0.18 -3.44 7.68 -25.76 -0.20 -3.63 16 16 C 0.20 4.00 4.36 -67.49 -0.29 3.70 16 17 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 18 N -0.70 -17.63 4.85 -53.00 -0.26 -17.88 16 19 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 22 N -0.93 -28.33 13.06 55.49 0.72 -27.60 16 23 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 27 C -0.12 -2.10 0.92 -154.71 -0.14 -2.25 16 28 C -0.13 -2.14 7.62 -26.28 -0.20 -2.34 16 29 C -0.13 -1.93 8.08 -25.74 -0.21 -2.14 16 30 C -0.12 -1.59 7.15 -26.28 -0.19 -1.77 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.42 7.70 -51.93 -0.40 0.02 16 35 H 0.06 0.42 7.70 -51.93 -0.40 0.02 16 36 H 0.14 0.82 6.46 -52.49 -0.34 0.48 16 37 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 38 H 0.16 0.86 8.06 -52.48 -0.42 0.43 16 39 H 0.40 5.65 6.36 -40.82 -0.26 5.39 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 42 H 0.39 10.48 7.62 -40.82 -0.31 10.17 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 48 H 0.08 0.96 7.03 -51.93 -0.36 0.59 16 49 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 400.79 15.07 6.04 6.04 Total: -1.00 -33.90 400.79 -9.97 -43.88 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -7.47 Total: 14.76 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -3.03 Total: -5.17 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: 0.09 Total: -62.05 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.58 Total: -15.00 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.90 -9.97 -43.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078837620.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.336 kcal (2) G-P(sol) polarization free energy of solvation -33.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds