Wall clock time and date at job start Wed Apr 1 2020 05:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42895 * 109.47260 * 2 1 4 4 C 1.35643 * 116.99993 * 179.97438 * 3 2 1 5 5 C 1.39346 * 120.54375 * 0.02765 * 4 3 2 6 6 C 1.38299 * 118.44059 * 179.97438 * 5 4 3 7 7 C 1.38765 * 119.44499 * 359.97438 * 6 5 4 8 8 N 1.31369 * 121.06868 * 359.72281 * 7 6 5 9 9 C 1.32858 * 121.69630 * 0.56599 * 8 7 6 10 10 C 1.47830 * 119.78559 * 179.70821 * 9 8 7 11 11 O 1.21555 * 119.99977 * 179.72441 * 10 9 8 12 12 N 1.34775 * 120.00087 * 359.73468 * 10 9 8 13 13 C 1.46499 * 120.00425 * 179.97438 * 12 10 9 14 14 H 1.09003 * 112.94371 * 336.39941 * 13 12 10 15 15 C 1.53947 * 113.66623 * 107.80773 * 13 12 10 16 16 C 1.53940 * 87.29448 * 139.20809 * 15 13 12 17 17 H 1.09004 * 113.66349 * 220.79405 * 16 15 13 18 18 N 1.46501 * 113.66388 * 89.74299 * 16 15 13 19 19 C 1.36934 * 120.00217 * 107.81275 * 18 16 15 20 20 H 1.08001 * 120.00144 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99806 * 179.97438 * 19 18 16 22 22 N 1.31611 * 120.00389 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99972 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46965 * 59.99917 * 23 21 19 25 25 H 1.48497 * 109.47508 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46990 * 300.00372 * 23 21 19 27 27 C 1.52905 * 86.78782 * 335.26706 * 16 15 13 28 28 C 1.52904 * 121.14213 * 150.61642 * 27 16 15 29 29 C 1.53957 * 86.78105 * 100.82198 * 28 27 16 30 30 C 1.52914 * 121.13770 * 259.18710 * 27 16 15 31 31 H 1.08995 * 109.47219 * 59.99910 * 1 2 3 32 32 H 1.09000 * 109.46962 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46917 * 299.99962 * 1 2 3 34 34 H 1.08997 * 109.46917 * 240.00037 * 2 1 3 35 35 H 1.09005 * 109.47169 * 120.00169 * 2 1 3 36 36 H 1.08002 * 120.77534 * 359.94712 * 5 4 3 37 37 H 1.07999 * 120.27600 * 180.02562 * 6 5 4 38 38 H 1.08010 * 119.46221 * 179.97438 * 7 6 5 39 39 H 0.97005 * 119.99572 * 359.97438 * 12 10 9 40 40 H 1.09003 * 113.57959 * 24.60328 * 15 13 12 41 41 H 1.09003 * 113.57772 * 253.81080 * 15 13 12 42 42 H 0.97002 * 119.99483 * 287.80730 * 18 16 15 43 43 H 0.97002 * 120.00418 * 180.02562 * 22 21 19 44 44 H 1.09003 * 113.66244 * 346.35405 * 28 27 16 45 45 H 1.08997 * 113.66842 * 215.29629 * 28 27 16 46 46 H 1.08998 * 113.57948 * 139.33665 * 29 28 27 47 47 H 1.09000 * 113.57875 * 270.13309 * 29 28 27 48 48 H 1.08993 * 113.66382 * 144.70253 * 30 27 16 49 49 H 1.08992 * 113.66018 * 13.64281 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3511 1.5249 0.0005 5 6 4.2104 0.4279 0.0005 6 6 5.5739 0.6593 0.0005 7 6 6.0443 1.9648 0.0000 8 7 5.2155 2.9840 -0.0059 9 6 3.8980 2.8125 -0.0005 10 6 3.0041 3.9899 -0.0009 11 8 1.7982 3.8375 -0.0011 12 7 3.5263 5.2324 -0.0014 13 6 2.6406 6.3993 -0.0025 14 1 1.6511 6.1814 -0.4046 15 6 2.6098 7.1530 1.3395 16 6 2.6149 8.4582 0.5232 17 1 3.2536 9.2349 0.9440 18 7 1.2755 8.9432 0.1815 19 6 0.7686 10.0516 0.8057 20 1 1.3562 10.5680 1.5503 21 6 -0.5003 10.5114 0.4814 22 7 -1.2162 9.8824 -0.4264 23 14 -1.1920 12.0230 1.3334 24 1 -0.3098 13.1878 1.0684 25 1 -2.5541 12.3047 0.8133 26 1 -1.2622 11.7780 2.7964 27 6 3.2807 7.6552 -0.5948 28 6 3.0789 8.0278 -2.0640 29 6 4.4645 8.6955 -1.9950 30 6 4.7886 7.7355 -0.8359 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.8206 -0.5793 0.0009 37 1 6.2667 -0.1692 0.0001 38 1 7.1091 2.1458 0.0005 39 1 4.4887 5.3540 -0.0011 40 1 3.5083 7.0108 1.9401 41 1 1.6920 6.9968 1.9064 42 1 0.7476 8.4791 -0.4871 43 1 -2.1028 10.2039 -0.6533 44 1 2.2624 8.7308 -2.2289 45 1 3.0406 7.1676 -2.7323 46 1 5.0738 8.5280 -2.8831 47 1 4.4292 9.7432 -1.6966 48 1 5.2308 6.7931 -1.1589 49 1 5.3377 8.2049 -0.0197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078837620.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:22 Heat of formation + Delta-G solvation = 0.926043 kcal Electronic energy + Delta-G solvation = -30530.190258 eV Core-core repulsion = 26458.695113 eV Total energy + Delta-G solvation = -4071.495145 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.13083 -41.59221 -39.73399 -39.25062 -36.49826 -35.61423 -34.15977 -33.20724 -33.04909 -31.57872 -30.87642 -26.78502 -26.75239 -25.83066 -25.50984 -25.05178 -23.83302 -23.16053 -21.71205 -21.65953 -19.76814 -19.37738 -18.96857 -18.44933 -17.97325 -17.28552 -17.01421 -16.69063 -16.53188 -16.27685 -15.93857 -15.70523 -15.47813 -15.20055 -14.81449 -14.72052 -14.33673 -14.26813 -13.86120 -13.60667 -13.52800 -13.51665 -13.30124 -13.24997 -13.11594 -12.79482 -12.67285 -12.62050 -12.31036 -12.22621 -12.00714 -11.87336 -11.79001 -11.35625 -11.29727 -11.09779 -10.91699 -10.82422 -10.74120 -10.55852 -9.89901 -9.47412 -9.01883 -7.94306 -5.24053 -0.36017 0.23309 1.46168 1.50166 1.55982 1.76830 2.06738 2.15234 2.54858 2.83210 3.21110 3.36386 3.41400 3.54727 3.59957 3.73433 3.79489 3.97037 3.99017 3.99690 4.02295 4.11579 4.14422 4.18533 4.23038 4.29958 4.47556 4.57345 4.64705 4.73885 4.79006 4.84926 4.86412 4.86783 4.92552 5.01244 5.05162 5.11006 5.13099 5.18816 5.23772 5.31287 5.45644 5.46308 5.52762 5.60082 5.73042 6.24853 6.26730 6.51096 6.84648 7.27260 7.31934 8.07259 8.30835 9.28990 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012881 B = 0.002797 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.291869 B =10007.258594 C =11536.610830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.038 3.962 3 O -0.311 6.311 4 C 0.121 3.879 5 C -0.173 4.173 6 C -0.085 4.085 7 C 0.055 3.945 8 N -0.436 5.436 9 C 0.004 3.996 10 C 0.557 3.443 11 O -0.566 6.566 12 N -0.684 5.684 13 C 0.145 3.855 14 H 0.069 0.931 15 C -0.171 4.171 16 C 0.184 3.816 17 H 0.077 0.923 18 N -0.714 5.714 19 C -0.242 4.242 20 H 0.081 0.919 21 C -0.076 4.076 22 N -0.971 5.971 23 Si 0.976 3.024 24 H -0.273 1.273 25 H -0.298 1.298 26 H -0.279 1.279 27 C -0.114 4.114 28 C -0.134 4.134 29 C -0.121 4.121 30 C -0.096 4.096 31 H 0.050 0.950 32 H 0.111 0.889 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.177 0.823 37 H 0.191 0.809 38 H 0.202 0.798 39 H 0.417 0.583 40 H 0.100 0.900 41 H 0.037 0.963 42 H 0.372 0.628 43 H 0.250 0.750 44 H 0.044 0.956 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.074 0.926 48 H 0.099 0.901 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.463 -24.323 -0.539 31.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.036 4.036 3 O -0.222 6.222 4 C 0.070 3.930 5 C -0.199 4.199 6 C -0.105 4.105 7 C -0.108 4.108 8 N -0.148 5.148 9 C -0.132 4.132 10 C 0.344 3.656 11 O -0.444 6.444 12 N -0.335 5.335 13 C 0.040 3.960 14 H 0.087 0.913 15 C -0.213 4.213 16 C 0.073 3.927 17 H 0.095 0.905 18 N -0.351 5.351 19 C -0.374 4.374 20 H 0.099 0.901 21 C -0.268 4.268 22 N -0.621 5.621 23 Si 0.805 3.195 24 H -0.199 1.199 25 H -0.224 1.224 26 H -0.205 1.205 27 C -0.117 4.117 28 C -0.172 4.172 29 C -0.159 4.159 30 C -0.133 4.133 31 H 0.069 0.931 32 H 0.129 0.871 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.194 0.806 37 H 0.208 0.792 38 H 0.219 0.781 39 H 0.256 0.744 40 H 0.118 0.882 41 H 0.056 0.944 42 H 0.204 0.796 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.094 0.906 46 H 0.104 0.896 47 H 0.092 0.908 48 H 0.117 0.883 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 19.642 -23.221 -0.440 30.417 hybrid contribution -1.542 -0.209 0.121 1.561 sum 18.100 -23.430 -0.318 29.609 Atomic orbital electron populations 1.21800 0.92595 1.04090 1.02424 1.23250 0.96617 0.80543 1.03167 1.86425 1.17917 1.31451 1.86387 1.20320 0.84592 0.94462 0.93600 1.22170 0.94482 0.98818 1.04449 1.22762 0.95140 0.99763 0.92807 1.23475 1.01090 0.87945 0.98249 1.67538 1.00878 1.37373 1.08985 1.20367 0.91008 0.90628 1.11228 1.18302 0.87149 0.83791 0.76373 1.90820 1.16048 1.86308 1.51255 1.45656 1.10963 1.03940 1.72990 1.21989 0.93359 0.83212 0.97468 0.91332 1.24179 1.01182 0.99189 0.96756 1.20849 0.86263 0.92628 0.92990 0.90541 1.42245 1.14126 1.31690 1.47042 1.19656 0.98388 1.03259 1.16101 0.90093 1.25613 0.97808 1.02794 1.00633 1.69843 1.11916 1.43571 1.36808 0.85175 0.76923 0.79512 0.77916 1.19921 1.22426 1.20513 1.23473 0.98623 0.94121 0.95463 1.22651 0.98787 1.00122 0.95592 1.22682 0.95287 0.98698 0.99202 1.22538 0.91488 1.00367 0.98922 0.93073 0.87093 0.93105 0.89697 0.89725 0.80599 0.79186 0.78122 0.74422 0.88158 0.94384 0.79623 0.94088 0.93736 0.90570 0.89638 0.90767 0.88278 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 10.28 71.98 0.74 -1.91 16 2 C 0.04 0.65 5.48 71.98 0.39 1.04 16 3 O -0.31 -8.88 8.20 -68.58 -0.56 -9.44 16 4 C 0.12 3.02 6.71 22.94 0.15 3.17 16 5 C -0.17 -2.35 9.13 22.55 0.21 -2.15 16 6 C -0.09 -0.74 10.10 22.41 0.23 -0.51 16 7 C 0.05 0.69 11.17 84.89 0.95 1.64 16 8 N -0.44 -9.60 9.54 -184.62 -1.76 -11.36 16 9 C 0.00 0.11 6.76 41.93 0.28 0.39 16 10 C 0.56 20.57 7.80 86.78 0.68 21.25 16 11 O -0.57 -26.03 14.74 17.10 0.25 -25.78 16 12 N -0.68 -22.48 5.24 -444.04 -2.33 -24.81 16 13 C 0.14 5.58 4.03 45.28 0.18 5.77 16 14 H 0.07 3.29 7.46 -2.39 -0.02 3.27 16 15 C -0.17 -6.72 7.68 31.23 0.24 -6.48 16 16 C 0.18 7.66 4.36 45.28 0.20 7.85 16 17 H 0.08 3.04 8.10 -2.38 -0.02 3.02 16 18 N -0.71 -38.00 4.85 -321.58 -1.56 -39.56 16 19 C -0.24 -13.91 9.97 84.03 0.84 -13.07 16 20 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 21 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 22 N -0.97 -62.28 13.06 21.65 0.28 -61.99 16 23 Si 0.98 47.71 29.55 68.60 2.03 49.73 16 24 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 26 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 27 C -0.11 -3.94 0.92 -52.31 -0.05 -3.99 16 28 C -0.13 -4.70 7.62 30.89 0.24 -4.46 16 29 C -0.12 -3.29 8.08 31.23 0.25 -3.03 16 30 C -0.10 -2.38 7.15 30.89 0.22 -2.16 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 0.98 7.70 -2.39 -0.02 0.97 16 35 H 0.08 0.99 7.70 -2.38 -0.02 0.97 16 36 H 0.18 1.16 6.46 -2.91 -0.02 1.14 16 37 H 0.19 -0.15 8.06 -2.91 -0.02 -0.18 16 38 H 0.20 0.93 8.06 -2.91 -0.02 0.91 16 39 H 0.42 11.25 6.36 -92.70 -0.59 10.66 16 40 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 41 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.37 21.79 7.62 -92.71 -0.71 21.09 16 43 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.04 1.90 7.58 -2.39 -0.02 1.88 16 45 H 0.08 2.55 8.14 -2.39 -0.02 2.54 16 46 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 47 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.10 2.10 7.03 -2.39 -0.02 2.09 16 49 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -83.07 400.79 2.25 -80.82 By element: Atomic # 1 Polarization: 43.44 SS G_CDS: -0.32 Total: 43.12 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 6.21 Total: -0.74 kcal Atomic # 7 Polarization: -132.36 SS G_CDS: -5.36 Total: -137.72 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -0.31 Total: -35.22 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.73 kcal Total: -83.07 2.25 -80.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078837620.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.749 kcal (2) G-P(sol) polarization free energy of solvation -83.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds