Wall clock time and date at job start Wed Apr 1 2020 05:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42907 * 109.47037 * 2 1 4 4 C 1.35639 * 116.99717 * 180.02562 * 3 2 1 5 5 C 1.39345 * 120.54722 * 0.27076 * 4 3 2 6 6 C 1.38298 * 118.44536 * 180.26485 * 5 4 3 7 7 C 1.38765 * 119.44348 * 359.72680 * 6 5 4 8 8 N 1.31383 * 121.06751 * 0.02562 * 7 6 5 9 9 C 1.32863 * 121.69448 * 0.02562 * 8 7 6 10 10 C 1.47829 * 119.78172 * 179.97438 * 9 8 7 11 11 O 1.21552 * 119.99927 * 180.02562 * 10 9 8 12 12 N 1.34770 * 120.00359 * 359.97438 * 10 9 8 13 13 C 1.46500 * 120.00274 * 180.02562 * 12 10 9 14 14 H 1.09002 * 112.88488 * 336.34255 * 13 12 10 15 15 C 1.54147 * 113.80547 * 107.70561 * 13 12 10 16 16 C 1.53952 * 87.22650 * 139.16282 * 15 13 12 17 17 H 1.09002 * 113.66257 * 89.85973 * 16 15 13 18 18 N 1.46498 * 113.65985 * 220.82548 * 16 15 13 19 19 C 1.36943 * 119.99752 * 253.70920 * 18 16 15 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 16 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 16 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47213 * 60.00246 * 23 21 19 25 25 H 1.48502 * 109.47317 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47081 * 299.99875 * 23 21 19 27 27 C 1.52909 * 86.88438 * 335.34368 * 16 15 13 28 28 C 1.52914 * 121.13623 * 259.13496 * 27 16 15 29 29 C 1.53952 * 86.78154 * 209.37981 * 28 27 16 30 30 C 1.52905 * 121.13816 * 150.57437 * 27 16 15 31 31 H 1.09001 * 109.47051 * 59.99763 * 1 2 3 32 32 H 1.09001 * 109.47221 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47096 * 299.99758 * 1 2 3 34 34 H 1.08994 * 109.46719 * 239.99781 * 2 1 3 35 35 H 1.09001 * 109.47107 * 119.99683 * 2 1 3 36 36 H 1.07999 * 120.77617 * 0.02562 * 5 4 3 37 37 H 1.07996 * 120.28238 * 179.70974 * 6 5 4 38 38 H 1.08002 * 119.47191 * 179.97438 * 7 6 5 39 39 H 0.97010 * 120.00036 * 359.97438 * 12 10 9 40 40 H 1.08996 * 113.58133 * 24.58812 * 15 13 12 41 41 H 1.09000 * 113.63350 * 253.74345 * 15 13 12 42 42 H 0.97001 * 120.00384 * 73.99275 * 18 16 15 43 43 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 44 44 H 1.08995 * 113.66107 * 323.84906 * 28 27 16 45 45 H 1.09001 * 113.65891 * 94.90690 * 28 27 16 46 46 H 1.09000 * 113.57991 * 270.13018 * 29 28 27 47 47 H 1.09001 * 113.64703 * 139.34657 * 29 28 27 48 48 H 1.09010 * 113.66152 * 265.08803 * 30 27 16 49 49 H 1.08999 * 113.66770 * 36.14030 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3511 1.5250 -0.0005 5 6 4.2104 0.4281 -0.0067 6 6 5.5739 0.6594 -0.0014 7 6 6.0443 1.9648 0.0041 8 7 5.2154 2.9842 0.0048 9 6 3.8979 2.8126 0.0009 10 6 3.0040 3.9900 0.0024 11 8 1.7981 3.8376 -0.0007 12 7 3.5261 5.2325 0.0084 13 6 2.6403 6.3993 0.0105 14 1 1.6524 6.1822 -0.3957 15 6 2.6023 7.1492 1.3568 16 6 2.6116 8.4564 0.5436 17 1 1.6163 8.8188 0.2866 18 7 3.4674 9.4987 1.1159 19 6 2.9051 10.5769 1.7456 20 1 1.8309 10.6566 1.8243 21 6 3.7158 11.5674 2.2828 22 7 5.0249 11.4704 2.1864 23 14 2.9489 13.0378 3.1425 24 1 2.1409 12.5701 4.2973 25 1 4.0216 13.9451 3.6234 26 1 2.0744 13.7676 2.1896 27 6 3.2817 7.6578 -0.5751 28 6 4.7903 7.7400 -0.8108 29 6 4.4870 7.4510 -2.2922 30 6 3.0846 8.0357 -2.0436 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 3.8207 -0.5791 -0.0116 37 1 6.2668 -0.1690 -0.0013 38 1 7.1090 2.1460 0.0087 39 1 4.4886 5.3542 0.0120 40 1 3.4977 7.0054 1.9614 41 1 1.6817 6.9918 1.9188 42 1 4.4322 9.4272 1.0451 43 1 5.5914 12.1624 2.5621 44 1 5.2072 8.7316 -0.6350 45 1 5.3539 6.9483 -0.3172 46 1 4.4795 6.3888 -2.5367 47 1 5.0884 8.0401 -2.9846 48 1 2.2857 7.4801 -2.5348 49 1 3.0221 9.1104 -2.2143 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078837621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:28 Heat of formation + Delta-G solvation = 23.061767 kcal Electronic energy + Delta-G solvation = -30494.254033 eV Core-core repulsion = 26423.718765 eV Total energy + Delta-G solvation = -4070.535268 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.18076 -40.35660 -38.66716 -38.28887 -34.80410 -34.00131 -32.89613 -32.40451 -32.07939 -30.30522 -29.63406 -25.54484 -25.39737 -24.76822 -24.18159 -23.71696 -22.54218 -22.09864 -20.36312 -20.29030 -18.85999 -18.21075 -17.45903 -17.23434 -16.78227 -16.56290 -15.81829 -15.56015 -15.17857 -14.85966 -14.79044 -14.55287 -14.37609 -13.81449 -13.72256 -13.66095 -12.98736 -12.96076 -12.86561 -12.79222 -12.59539 -12.35255 -11.99893 -11.74803 -11.65311 -11.40368 -11.26149 -11.22993 -10.92856 -10.73180 -10.65535 -10.26076 -10.17956 -10.16654 -10.04165 -9.85713 -9.71492 -9.53451 -9.31947 -8.78819 -8.75831 -8.48278 -6.90043 -5.74517 -3.02278 0.42205 0.90875 2.74772 2.77829 3.26342 3.46768 3.51193 3.52118 3.70937 4.05417 4.23544 4.38065 4.53901 4.59023 4.63149 4.70461 4.82220 4.84449 4.86071 5.01725 5.12300 5.15583 5.26261 5.29533 5.36364 5.47929 5.52230 5.54391 5.59992 5.73509 5.78838 5.96062 5.99605 6.04522 6.10115 6.11428 6.24969 6.26392 6.34995 6.42368 6.49700 6.69920 6.72298 6.88230 6.91908 7.02055 7.17106 7.45854 7.74114 7.86690 8.43985 8.44987 9.55993 10.14227 10.49381 11.47955 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.002495 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.586697 B =11218.780695 C =11703.016186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.270 6.270 4 C 0.139 3.861 5 C -0.178 4.178 6 C -0.109 4.109 7 C 0.057 3.943 8 N -0.418 5.418 9 C 0.046 3.954 10 C 0.568 3.432 11 O -0.521 6.521 12 N -0.693 5.693 13 C 0.144 3.856 14 H 0.111 0.889 15 C -0.174 4.174 16 C 0.182 3.818 17 H 0.079 0.921 18 N -0.706 5.706 19 C -0.241 4.241 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.286 1.286 27 C -0.123 4.123 28 C -0.108 4.108 29 C -0.139 4.139 30 C -0.122 4.122 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.166 0.834 39 H 0.408 0.592 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.386 0.614 43 H 0.255 0.745 44 H 0.097 0.903 45 H 0.059 0.941 46 H 0.071 0.929 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.212 -26.670 -8.057 27.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.180 6.180 4 C 0.088 3.912 5 C -0.205 4.205 6 C -0.129 4.129 7 C -0.104 4.104 8 N -0.130 5.130 9 C -0.093 4.093 10 C 0.352 3.648 11 O -0.397 6.397 12 N -0.344 5.344 13 C 0.039 3.961 14 H 0.129 0.871 15 C -0.216 4.216 16 C 0.069 3.931 17 H 0.097 0.903 18 N -0.345 5.345 19 C -0.372 4.372 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.582 5.582 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.213 1.213 27 C -0.126 4.126 28 C -0.146 4.146 29 C -0.177 4.177 30 C -0.159 4.159 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.183 0.817 39 H 0.246 0.754 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.222 0.778 43 H 0.065 0.935 44 H 0.115 0.885 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.076 -25.572 -7.965 26.805 hybrid contribution 0.381 -0.471 0.580 0.839 sum -0.695 -26.043 -7.385 27.078 Atomic orbital electron populations 1.21741 0.92149 1.02603 1.04255 1.22948 0.96809 0.82047 1.01126 1.86444 1.16790 1.28574 1.86177 1.20023 0.84297 0.93740 0.93190 1.21745 0.94194 0.98697 1.05859 1.22199 0.95246 0.98938 0.96546 1.22726 1.00005 0.87803 0.99827 1.67651 1.01770 1.35561 1.08008 1.20840 0.90333 0.91364 1.06743 1.17613 0.87057 0.82601 0.77484 1.90815 1.13660 1.85580 1.49608 1.45847 1.11178 1.04583 1.72832 1.22233 0.93993 0.81602 0.98272 0.87103 1.24324 1.01872 0.99257 0.96150 1.21144 0.94551 0.87022 0.90404 0.90288 1.42317 1.05281 1.21473 1.65414 1.19270 0.91788 0.97953 1.28177 0.91137 1.24736 0.95373 0.99024 1.01757 1.69648 1.02178 1.35468 1.50873 0.86272 0.77792 0.82637 0.79514 1.21291 1.21772 1.21288 1.23454 0.97377 0.96119 0.95632 1.22445 0.94359 1.02546 0.95232 1.22824 0.97553 1.00240 0.97054 1.22680 0.96599 1.01131 0.95518 0.91188 0.90435 0.91140 0.92005 0.91972 0.83788 0.84000 0.81726 0.75444 0.90158 0.92122 0.77840 0.93480 0.88463 0.92241 0.91036 0.91971 0.92162 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.05 0.36 5.48 37.16 0.20 0.56 16 3 O -0.27 -3.43 8.20 -40.57 -0.33 -3.76 16 4 C 0.14 1.68 6.71 -38.55 -0.26 1.42 16 5 C -0.18 -1.48 9.13 -39.15 -0.36 -1.84 16 6 C -0.11 -0.77 10.10 -39.36 -0.40 -1.17 16 7 C 0.06 0.51 11.17 -17.55 -0.20 0.31 16 8 N -0.42 -5.17 9.54 -9.71 -0.09 -5.26 16 9 C 0.05 0.65 6.76 -82.88 -0.56 0.09 16 10 C 0.57 9.35 7.80 -12.34 -0.10 9.26 16 11 O -0.52 -9.90 14.74 -16.63 -0.25 -10.14 16 12 N -0.69 -10.83 5.27 -54.22 -0.29 -11.12 16 13 C 0.14 2.40 4.12 -67.38 -0.28 2.12 16 14 H 0.11 1.91 7.46 -51.93 -0.39 1.52 16 15 C -0.17 -3.27 7.70 -25.64 -0.20 -3.47 16 16 C 0.18 3.67 4.35 -67.48 -0.29 3.38 16 17 H 0.08 1.60 8.11 -51.93 -0.42 1.18 16 18 N -0.71 -17.53 5.32 -52.99 -0.28 -17.81 16 19 C -0.24 -6.67 9.97 -15.06 -0.15 -6.82 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.02 13.06 55.49 0.72 -27.29 16 23 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 C -0.12 -2.08 1.07 -154.71 -0.16 -2.24 16 28 C -0.11 -1.76 6.78 -26.28 -0.18 -1.94 16 29 C -0.14 -1.98 8.08 -25.75 -0.21 -2.19 16 30 C -0.12 -1.88 7.84 -26.28 -0.21 -2.08 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.37 7.68 -51.93 -0.40 -0.03 16 35 H 0.06 0.38 7.71 -51.93 -0.40 -0.02 16 36 H 0.14 0.77 6.46 -52.49 -0.34 0.43 16 37 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 38 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.41 6.05 6.05 -40.82 -0.25 5.80 16 40 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.39 10.06 6.17 -40.82 -0.25 9.81 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.10 1.82 6.99 -51.93 -0.36 1.45 16 45 H 0.06 0.91 6.42 -51.93 -0.33 0.57 16 46 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 49 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 398.45 15.07 6.00 6.00 Total: -1.00 -33.41 398.45 -9.92 -43.34 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -7.34 Total: 14.32 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -3.05 Total: -5.76 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: 0.06 Total: -61.48 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.58 Total: -13.90 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.41 -9.92 -43.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078837621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.397 kcal (2) G-P(sol) polarization free energy of solvation -33.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds