Wall clock time and date at job start Wed Apr 1 2020 05:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42907 * 109.47037 * 2 1 4 4 C 1.35639 * 116.99717 * 180.02562 * 3 2 1 5 5 C 1.39345 * 120.54722 * 0.27076 * 4 3 2 6 6 C 1.38298 * 118.44536 * 180.26485 * 5 4 3 7 7 C 1.38765 * 119.44348 * 359.72680 * 6 5 4 8 8 N 1.31383 * 121.06751 * 0.02562 * 7 6 5 9 9 C 1.32863 * 121.69448 * 0.02562 * 8 7 6 10 10 C 1.47829 * 119.78172 * 179.97438 * 9 8 7 11 11 O 1.21552 * 119.99927 * 180.02562 * 10 9 8 12 12 N 1.34770 * 120.00359 * 359.97438 * 10 9 8 13 13 C 1.46500 * 120.00274 * 180.02562 * 12 10 9 14 14 H 1.09002 * 112.88488 * 336.34255 * 13 12 10 15 15 C 1.54147 * 113.80547 * 107.70561 * 13 12 10 16 16 C 1.53952 * 87.22650 * 139.16282 * 15 13 12 17 17 H 1.09002 * 113.66257 * 89.85973 * 16 15 13 18 18 N 1.46498 * 113.65985 * 220.82548 * 16 15 13 19 19 C 1.36943 * 119.99752 * 253.70920 * 18 16 15 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 16 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 16 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47213 * 60.00246 * 23 21 19 25 25 H 1.48502 * 109.47317 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47081 * 299.99875 * 23 21 19 27 27 C 1.52909 * 86.88438 * 335.34368 * 16 15 13 28 28 C 1.52914 * 121.13623 * 259.13496 * 27 16 15 29 29 C 1.53952 * 86.78154 * 209.37981 * 28 27 16 30 30 C 1.52905 * 121.13816 * 150.57437 * 27 16 15 31 31 H 1.09001 * 109.47051 * 59.99763 * 1 2 3 32 32 H 1.09001 * 109.47221 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47096 * 299.99758 * 1 2 3 34 34 H 1.08994 * 109.46719 * 239.99781 * 2 1 3 35 35 H 1.09001 * 109.47107 * 119.99683 * 2 1 3 36 36 H 1.07999 * 120.77617 * 0.02562 * 5 4 3 37 37 H 1.07996 * 120.28238 * 179.70974 * 6 5 4 38 38 H 1.08002 * 119.47191 * 179.97438 * 7 6 5 39 39 H 0.97010 * 120.00036 * 359.97438 * 12 10 9 40 40 H 1.08996 * 113.58133 * 24.58812 * 15 13 12 41 41 H 1.09000 * 113.63350 * 253.74345 * 15 13 12 42 42 H 0.97001 * 120.00384 * 73.99275 * 18 16 15 43 43 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 44 44 H 1.08995 * 113.66107 * 323.84906 * 28 27 16 45 45 H 1.09001 * 113.65891 * 94.90690 * 28 27 16 46 46 H 1.09000 * 113.57991 * 270.13018 * 29 28 27 47 47 H 1.09001 * 113.64703 * 139.34657 * 29 28 27 48 48 H 1.09010 * 113.66152 * 265.08803 * 30 27 16 49 49 H 1.08999 * 113.66770 * 36.14030 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3511 1.5250 -0.0005 5 6 4.2104 0.4281 -0.0067 6 6 5.5739 0.6594 -0.0014 7 6 6.0443 1.9648 0.0041 8 7 5.2154 2.9842 0.0048 9 6 3.8979 2.8126 0.0009 10 6 3.0040 3.9900 0.0024 11 8 1.7981 3.8376 -0.0007 12 7 3.5261 5.2325 0.0084 13 6 2.6403 6.3993 0.0105 14 1 1.6524 6.1822 -0.3957 15 6 2.6023 7.1492 1.3568 16 6 2.6116 8.4564 0.5436 17 1 1.6163 8.8188 0.2866 18 7 3.4674 9.4987 1.1159 19 6 2.9051 10.5769 1.7456 20 1 1.8309 10.6566 1.8243 21 6 3.7158 11.5674 2.2828 22 7 5.0249 11.4704 2.1864 23 14 2.9489 13.0378 3.1425 24 1 2.1409 12.5701 4.2973 25 1 4.0216 13.9451 3.6234 26 1 2.0744 13.7676 2.1896 27 6 3.2817 7.6578 -0.5751 28 6 4.7903 7.7400 -0.8108 29 6 4.4870 7.4510 -2.2922 30 6 3.0846 8.0357 -2.0436 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 3.8207 -0.5791 -0.0116 37 1 6.2668 -0.1690 -0.0013 38 1 7.1090 2.1460 0.0087 39 1 4.4886 5.3542 0.0120 40 1 3.4977 7.0054 1.9614 41 1 1.6817 6.9918 1.9188 42 1 4.4322 9.4272 1.0451 43 1 5.5914 12.1624 2.5621 44 1 5.2072 8.7316 -0.6350 45 1 5.3539 6.9483 -0.3172 46 1 4.4795 6.3888 -2.5367 47 1 5.0884 8.0401 -2.9846 48 1 2.2857 7.4801 -2.5348 49 1 3.0221 9.1104 -2.2143 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078837621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:27 Heat of formation + Delta-G solvation = 1.933309 kcal Electronic energy + Delta-G solvation = -30495.170232 eV Core-core repulsion = 26423.718765 eV Total energy + Delta-G solvation = -4071.451467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.14964 -41.59241 -39.69452 -39.24127 -36.38648 -35.58514 -34.21171 -33.21642 -33.03213 -31.70672 -30.88949 -26.84987 -26.74267 -25.91194 -25.43045 -25.03395 -23.57396 -23.12795 -21.76464 -21.55771 -19.88376 -19.38636 -19.05571 -18.39589 -17.88999 -17.26690 -17.20827 -16.58540 -16.53993 -16.29211 -15.92748 -15.77926 -15.45558 -15.15031 -14.87623 -14.62282 -14.44295 -14.17444 -13.91367 -13.59294 -13.49738 -13.42358 -13.25450 -13.16697 -13.10885 -12.84242 -12.78566 -12.36673 -12.30275 -12.25163 -12.11018 -11.84741 -11.82180 -11.37454 -11.34104 -11.08302 -11.02895 -10.83103 -10.63782 -10.56581 -9.94444 -9.47804 -8.93902 -7.92764 -5.20175 -0.35907 0.22844 1.47661 1.50320 1.56214 1.75742 2.05596 2.14456 2.58013 2.82814 3.20681 3.37718 3.43922 3.56413 3.61848 3.73403 3.77040 3.94485 3.98099 3.99661 4.02237 4.12794 4.14774 4.17052 4.31245 4.33056 4.45716 4.55390 4.62911 4.71459 4.76732 4.78820 4.90422 4.90725 4.95242 4.98420 5.00536 5.05997 5.10325 5.13397 5.21857 5.35367 5.44877 5.46832 5.52488 5.59678 5.69983 6.24582 6.29397 6.49600 6.83113 7.22609 7.36319 8.12417 8.37860 9.30230 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.002495 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.586697 B =11218.780695 C =11703.016186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.037 3.963 3 O -0.306 6.306 4 C 0.126 3.874 5 C -0.173 4.173 6 C -0.086 4.086 7 C 0.051 3.949 8 N -0.442 5.442 9 C 0.002 3.998 10 C 0.564 3.436 11 O -0.558 6.558 12 N -0.689 5.689 13 C 0.161 3.839 14 H 0.108 0.892 15 C -0.169 4.169 16 C 0.167 3.833 17 H 0.077 0.923 18 N -0.717 5.717 19 C -0.244 4.244 20 H 0.074 0.926 21 C -0.073 4.073 22 N -0.968 5.968 23 Si 0.971 3.029 24 H -0.281 1.281 25 H -0.295 1.295 26 H -0.278 1.278 27 C -0.115 4.115 28 C -0.110 4.110 29 C -0.121 4.121 30 C -0.120 4.120 31 H 0.054 0.946 32 H 0.108 0.892 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.178 0.822 37 H 0.189 0.811 38 H 0.195 0.805 39 H 0.412 0.588 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.378 0.622 43 H 0.251 0.749 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.084 0.916 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.661 -29.783 -8.938 31.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.037 4.037 3 O -0.217 6.217 4 C 0.075 3.925 5 C -0.199 4.199 6 C -0.105 4.105 7 C -0.111 4.111 8 N -0.154 5.154 9 C -0.134 4.134 10 C 0.351 3.649 11 O -0.436 6.436 12 N -0.340 5.340 13 C 0.056 3.944 14 H 0.126 0.874 15 C -0.212 4.212 16 C 0.056 3.944 17 H 0.095 0.905 18 N -0.355 5.355 19 C -0.376 4.376 20 H 0.092 0.908 21 C -0.265 4.265 22 N -0.618 5.618 23 Si 0.800 3.200 24 H -0.208 1.208 25 H -0.222 1.222 26 H -0.204 1.204 27 C -0.117 4.117 28 C -0.147 4.147 29 C -0.158 4.158 30 C -0.157 4.157 31 H 0.073 0.927 32 H 0.127 0.873 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.196 0.804 37 H 0.206 0.794 38 H 0.212 0.788 39 H 0.251 0.749 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.212 0.788 43 H 0.060 0.940 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.103 0.897 47 H 0.094 0.906 48 H 0.093 0.907 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.244 -28.714 -8.865 30.053 hybrid contribution 0.137 0.303 0.861 0.923 sum -0.106 -28.411 -8.004 29.517 Atomic orbital electron populations 1.21789 0.92219 1.04081 1.02635 1.23267 0.96868 0.80536 1.03069 1.86402 1.17523 1.31408 1.86345 1.20233 0.84697 0.94189 0.93419 1.22170 0.94306 0.99004 1.04389 1.22731 0.95407 0.99471 0.92908 1.23401 1.00955 0.88145 0.98581 1.67561 1.01364 1.37467 1.08970 1.20443 0.90869 0.91002 1.11104 1.18125 0.87169 0.83343 0.76263 1.90774 1.15276 1.86204 1.51313 1.45734 1.11073 1.04255 1.72927 1.21887 0.94183 0.82069 0.96300 0.87377 1.24166 1.01007 0.99003 0.96987 1.21379 0.94295 0.86515 0.92196 0.90540 1.42420 1.05272 1.21975 1.65812 1.19647 0.92068 0.98507 1.27330 0.90825 1.25506 0.95871 1.01877 1.03288 1.69802 1.03348 1.36258 1.52395 0.85253 0.76851 0.79372 0.78526 1.20756 1.22157 1.20410 1.23323 0.97805 0.94940 0.95664 1.22387 0.93661 1.01421 0.97275 1.22734 0.96434 1.01107 0.95535 1.22665 0.98087 1.00849 0.94096 0.92652 0.87345 0.92903 0.89763 0.90036 0.80426 0.79356 0.78818 0.74947 0.91571 0.92445 0.78836 0.94037 0.91015 0.91426 0.89726 0.90629 0.90719 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.04 0.51 5.48 71.98 0.39 0.91 16 3 O -0.31 -7.72 8.20 -68.54 -0.56 -8.28 16 4 C 0.13 2.92 6.71 22.94 0.15 3.07 16 5 C -0.17 -2.24 9.13 22.55 0.21 -2.04 16 6 C -0.09 -0.81 10.10 22.41 0.23 -0.58 16 7 C 0.05 0.75 11.17 84.89 0.95 1.70 16 8 N -0.44 -10.43 9.54 -184.62 -1.76 -12.19 16 9 C 0.00 0.06 6.76 41.93 0.28 0.34 16 10 C 0.56 19.16 7.80 86.78 0.68 19.84 16 11 O -0.56 -22.11 14.74 17.11 0.25 -21.86 16 12 N -0.69 -22.01 5.27 -443.72 -2.34 -24.35 16 13 C 0.16 5.51 4.12 45.35 0.19 5.70 16 14 H 0.11 3.81 7.46 -2.39 -0.02 3.80 16 15 C -0.17 -6.64 7.70 31.30 0.24 -6.40 16 16 C 0.17 6.98 4.35 45.28 0.20 7.17 16 17 H 0.08 3.20 8.11 -2.39 -0.02 3.19 16 18 N -0.72 -36.79 5.32 -321.55 -1.71 -38.50 16 19 C -0.24 -13.79 9.97 84.03 0.84 -12.95 16 20 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 21 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 22 N -0.97 -59.58 13.06 21.65 0.28 -59.30 16 23 Si 0.97 47.01 29.55 68.60 2.03 49.04 16 24 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 25 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 26 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 27 C -0.12 -3.94 1.07 -52.31 -0.06 -4.00 16 28 C -0.11 -3.60 6.78 30.89 0.21 -3.39 16 29 C -0.12 -3.29 8.08 31.23 0.25 -3.04 16 30 C -0.12 -3.62 7.84 30.88 0.24 -3.38 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.76 7.68 -2.39 -0.02 0.74 16 35 H 0.08 0.79 7.71 -2.39 -0.02 0.77 16 36 H 0.18 1.01 6.46 -2.91 -0.02 0.99 16 37 H 0.19 0.05 8.06 -2.91 -0.02 0.03 16 38 H 0.20 1.52 8.06 -2.91 -0.02 1.50 16 39 H 0.41 12.39 6.05 -92.70 -0.56 11.83 16 40 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.38 20.50 6.17 -92.71 -0.57 19.93 16 43 H 0.25 15.03 8.31 -92.71 -0.77 14.25 16 44 H 0.07 2.77 6.99 -2.39 -0.02 2.75 16 45 H 0.07 2.08 6.42 -2.39 -0.02 2.07 16 46 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 48 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 49 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -76.52 398.45 2.25 -74.27 By element: Atomic # 1 Polarization: 43.46 SS G_CDS: -0.15 Total: 43.30 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 6.21 Total: -2.13 kcal Atomic # 7 Polarization: -128.81 SS G_CDS: -5.53 Total: -134.34 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.31 Total: -30.14 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -76.52 2.25 -74.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078837621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.205 kcal (2) G-P(sol) polarization free energy of solvation -76.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds