Wall clock time and date at job start Wed Apr 1 2020 05:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.46961 * 2 1 4 4 C 1.35435 * 116.99756 * 179.97438 * 3 2 1 5 5 N 1.32227 * 119.80233 * 0.02562 * 4 3 2 6 6 C 1.31884 * 121.80301 * 179.97438 * 5 4 3 7 7 C 1.38349 * 121.18295 * 0.02562 * 6 5 4 8 8 C 1.38338 * 119.45887 * 359.74482 * 7 6 5 9 9 C 1.39990 * 118.35038 * 0.49139 * 8 7 6 10 10 C 1.47522 * 120.59704 * 179.77958 * 9 8 7 11 11 O 1.21589 * 119.99751 * 136.98299 * 10 9 8 12 12 N 1.34777 * 120.00408 * 316.98923 * 10 9 8 13 13 C 1.47638 * 125.73337 * 174.65147 * 12 10 9 14 14 C 1.55914 * 104.42059 * 155.02442 * 13 12 10 15 15 H 1.08997 * 112.88592 * 158.83908 * 14 13 12 16 16 C 1.53070 * 106.85435 * 283.02308 * 14 13 12 17 17 C 1.52777 * 110.81138 * 163.74999 * 16 14 13 18 18 N 1.47446 * 107.14607 * 301.13018 * 17 16 14 19 19 C 1.36940 * 121.96569 * 238.39053 * 18 17 16 20 20 H 1.07993 * 119.99797 * 27.27826 * 19 18 17 21 21 C 1.38807 * 119.99504 * 207.27793 * 19 18 17 22 22 N 1.31618 * 120.00628 * 18.42771 * 21 19 18 23 23 Si 1.86803 * 119.99607 * 198.42726 * 21 19 18 24 24 H 1.48501 * 109.46974 * 94.99683 * 23 21 19 25 25 H 1.48497 * 109.47246 * 214.99322 * 23 21 19 26 26 H 1.48501 * 109.47382 * 334.99714 * 23 21 19 27 27 C 1.46716 * 116.69182 * 59.64673 * 18 17 16 28 28 C 1.50974 * 111.06439 * 306.40802 * 27 18 17 29 29 H 1.08997 * 108.99357 * 167.68604 * 28 27 18 30 30 C 1.47459 * 125.72781 * 354.64930 * 12 10 9 31 31 H 1.09003 * 109.47013 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47149 * 299.99874 * 1 2 3 33 33 H 1.09003 * 109.47148 * 60.00254 * 1 2 3 34 34 H 1.08998 * 109.47149 * 240.00126 * 2 1 3 35 35 H 1.09003 * 109.47148 * 119.99746 * 2 1 3 36 36 H 1.08000 * 119.40522 * 179.97438 * 6 5 4 37 37 H 1.08002 * 120.27339 * 179.97438 * 7 6 5 38 38 H 1.08010 * 120.82506 * 180.25853 * 8 7 6 39 39 H 1.08999 * 110.44611 * 36.28598 * 13 12 10 40 40 H 1.09006 * 110.44143 * 273.75748 * 13 12 10 41 41 H 1.08995 * 109.21053 * 284.09218 * 16 14 13 42 42 H 1.09003 * 109.21011 * 43.45066 * 16 14 13 43 43 H 1.09003 * 109.79244 * 61.84889 * 17 16 14 44 44 H 1.08993 * 109.79665 * 182.69850 * 17 16 14 45 45 H 0.96996 * 120.00236 * 180.02562 * 22 21 19 46 46 H 1.09005 * 109.15510 * 186.00264 * 27 18 17 47 47 H 1.08997 * 109.16362 * 66.81939 * 27 18 17 48 48 H 1.08998 * 110.06310 * 61.31736 * 30 12 10 49 49 H 1.08994 * 110.06042 * 299.80530 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5247 0.0005 5 7 4.1508 0.4733 0.0005 6 6 5.4635 0.6003 0.0005 7 6 6.0625 1.8474 0.0011 8 6 5.2713 2.9822 -0.0037 9 6 3.8805 2.8229 0.0016 10 6 2.9900 3.9990 0.0017 11 8 2.0067 4.0171 -0.7133 12 7 3.2664 5.0536 0.7942 13 6 2.5306 6.3334 0.8141 14 6 2.7816 6.9033 2.2435 15 1 2.6248 7.9803 2.3040 16 6 1.8727 6.1246 3.1977 17 6 2.3175 6.3142 4.6469 18 7 3.7098 5.8380 4.7401 19 6 4.0772 4.8352 5.5972 20 1 3.3573 4.0863 5.8923 21 6 5.3750 4.7814 6.0867 22 7 6.1417 5.8501 6.0378 23 14 6.0335 3.1921 6.8147 24 1 6.7736 2.4387 5.7707 25 1 6.9487 3.5054 7.9413 26 1 4.9016 2.3685 7.3107 27 6 4.6952 6.5117 3.8871 28 6 4.2568 6.5055 2.4424 29 1 4.8870 7.1923 1.8775 30 6 4.3544 5.1228 1.7871 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 6.0819 -0.2851 0.0009 37 1 7.1390 1.9344 0.0015 38 1 5.7156 3.9667 -0.0076 39 1 1.4660 6.1631 0.6536 40 1 2.9267 7.0121 0.0587 41 1 0.8483 6.4803 3.0875 42 1 1.9131 5.0647 2.9466 43 1 2.2442 7.3667 4.9208 44 1 1.6898 5.7157 5.3071 45 1 7.0487 5.8123 6.3795 46 1 5.6529 5.9981 3.9725 47 1 4.8122 7.5426 4.2210 48 1 5.3194 5.0106 1.2928 49 1 4.2255 4.3433 2.5379 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088188371.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:26 Heat of formation + Delta-G solvation = -2.359647 kcal Electronic energy + Delta-G solvation = -31965.357900 eV Core-core repulsion = 27893.720277 eV Total energy + Delta-G solvation = -4071.637623 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.97196 -39.83134 -38.09093 -37.87795 -35.21196 -33.14700 -32.29099 -32.12412 -30.83019 -30.56044 -29.89214 -27.42244 -25.79182 -24.80194 -24.14665 -23.15530 -22.34152 -21.60596 -21.29251 -19.65906 -18.64726 -18.35734 -17.24490 -16.92746 -16.68238 -16.32802 -15.56486 -15.43511 -15.22904 -14.75359 -14.26143 -13.99374 -13.96655 -13.76122 -13.56371 -13.39248 -13.24714 -12.89446 -12.77325 -12.55806 -12.42536 -12.26648 -12.11234 -11.90582 -11.71489 -11.57573 -11.13296 -11.05198 -10.83459 -10.76057 -10.60641 -10.53621 -10.24336 -10.08172 -9.98435 -9.94750 -9.51162 -9.45592 -9.42647 -8.58695 -8.52618 -8.27848 -6.74393 -5.84980 -3.25400 0.74976 1.19461 2.85500 2.97673 3.19931 3.32686 3.41139 3.42499 3.75077 4.15235 4.44441 4.61165 4.67921 4.87869 4.94251 4.96097 5.02073 5.03234 5.08120 5.24259 5.29227 5.33632 5.38799 5.44114 5.57866 5.62290 5.74616 5.76682 5.79772 5.89840 5.92427 5.97679 6.00496 6.08735 6.14873 6.27635 6.31267 6.42538 6.45920 6.56588 6.69347 6.69839 6.82340 7.00115 7.20338 7.22560 7.53962 7.66407 7.75079 7.79369 8.36682 8.37510 9.14838 9.77707 10.38581 11.23262 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009339 B = 0.004410 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.438155 B = 6347.966355 C = 7424.200613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.064 3.936 3 O -0.284 6.284 4 C 0.368 3.632 5 N -0.545 5.545 6 C 0.159 3.841 7 C -0.216 4.216 8 C -0.008 4.008 9 C -0.195 4.195 10 C 0.585 3.415 11 O -0.533 6.533 12 N -0.608 5.608 13 C 0.109 3.891 14 C -0.087 4.087 15 H 0.091 0.909 16 C -0.126 4.126 17 C 0.141 3.859 18 N -0.587 5.587 19 C -0.245 4.245 20 H 0.066 0.934 21 C 0.004 3.996 22 N -0.902 5.902 23 Si 0.897 3.103 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.175 3.825 28 C -0.111 4.111 29 H 0.063 0.937 30 C 0.108 3.892 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.163 0.837 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.061 0.939 43 H 0.023 0.977 44 H 0.053 0.947 45 H 0.254 0.746 46 H 0.091 0.909 47 H 0.024 0.976 48 H 0.059 0.941 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.371 -5.671 -13.056 14.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.190 6.190 4 C 0.189 3.811 5 N -0.269 5.269 6 C 0.002 3.998 7 C -0.236 4.236 8 C -0.034 4.034 9 C -0.201 4.201 10 C 0.373 3.627 11 O -0.410 6.410 12 N -0.342 5.342 13 C -0.013 4.013 14 C -0.106 4.106 15 H 0.109 0.891 16 C -0.165 4.165 17 C 0.015 3.985 18 N -0.310 5.310 19 C -0.374 4.374 20 H 0.084 0.916 21 C -0.195 4.195 22 N -0.546 5.546 23 Si 0.727 3.273 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.204 1.204 27 C 0.049 3.951 28 C -0.132 4.132 29 H 0.082 0.918 30 C -0.014 4.014 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.180 0.820 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.041 0.959 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.109 0.891 47 H 0.042 0.958 48 H 0.077 0.923 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.392 -6.387 -13.397 15.224 hybrid contribution 1.073 -0.200 0.465 1.186 sum -2.320 -6.588 -12.932 14.697 Atomic orbital electron populations 1.21802 0.92920 1.02591 1.03669 1.22655 0.95052 0.81043 1.02331 1.86379 1.16041 1.30365 1.86188 1.19666 0.84428 0.88375 0.88671 1.67424 1.06666 1.32304 1.20496 1.22593 0.89108 0.97620 0.90476 1.21921 1.01731 0.92904 1.07078 1.21752 0.90992 1.00313 0.90336 1.19853 0.94437 0.92297 1.13520 1.17363 0.84369 0.81179 0.79824 1.90771 1.27645 1.80574 1.42044 1.48531 1.33155 1.14293 1.38205 1.22578 0.97134 0.83999 0.97607 1.22300 0.96020 0.99318 0.92958 0.89125 1.21956 0.96775 1.00159 0.97598 1.20958 0.87863 0.96759 0.92964 1.44131 1.02483 1.40482 1.43890 1.19148 0.96015 1.01433 1.20846 0.91643 1.24972 0.98726 0.96886 0.98909 1.70029 1.08782 1.26154 1.49680 0.86341 0.78852 0.83575 0.78504 1.21471 1.21734 1.20424 1.20147 0.94736 0.96567 0.83695 1.22099 0.95779 0.94374 1.00911 0.91833 1.22200 0.88388 1.00555 0.90217 0.90405 0.91511 0.91519 0.91656 0.91541 0.81984 0.83849 0.83420 0.90682 0.92033 0.93342 0.92063 0.95939 0.92866 0.93628 0.89086 0.95822 0.92267 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 37.16 0.38 -1.21 16 2 C 0.06 0.82 6.03 37.16 0.22 1.04 16 3 O -0.28 -4.78 8.99 -31.99 -0.29 -5.06 16 4 C 0.37 6.06 7.48 -16.61 -0.12 5.93 16 5 N -0.54 -7.84 9.21 -12.98 -0.12 -7.96 16 6 C 0.16 1.82 11.17 -17.49 -0.20 1.63 16 7 C -0.22 -2.39 10.09 -39.50 -0.40 -2.79 16 8 C -0.01 -0.11 8.58 -38.89 -0.33 -0.44 16 9 C -0.20 -3.17 5.44 -104.69 -0.57 -3.74 16 10 C 0.58 10.57 7.23 -12.48 -0.09 10.48 16 11 O -0.53 -11.04 16.51 -8.70 -0.14 -11.18 16 12 N -0.61 -10.14 2.89 -171.20 -0.49 -10.64 16 13 C 0.11 1.66 6.23 -1.86 -0.01 1.65 16 14 C -0.09 -1.36 3.67 -88.46 -0.32 -1.69 16 15 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 16 C -0.13 -2.19 4.99 -26.81 -0.13 -2.32 16 17 C 0.14 2.84 6.57 -3.64 -0.02 2.82 16 18 N -0.59 -13.82 2.87 -173.65 -0.50 -14.31 16 19 C -0.24 -6.43 9.70 -15.06 -0.15 -6.58 16 20 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 21 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 22 N -0.90 -24.81 11.19 55.49 0.62 -24.19 16 23 Si 0.90 21.05 29.59 -169.99 -5.03 16.02 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.18 3.79 4.65 -4.94 -0.02 3.77 16 28 C -0.11 -1.89 2.70 -90.90 -0.25 -2.14 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 C 0.11 1.82 4.95 -3.34 -0.02 1.80 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 36 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.15 1.69 6.05 -52.48 -0.32 1.38 16 39 H 0.07 1.19 7.84 -51.93 -0.41 0.78 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 1.20 7.20 -51.93 -0.37 0.83 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.05 1.08 7.96 -51.93 -0.41 0.67 16 45 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 46 H 0.09 2.21 6.00 -51.93 -0.31 1.90 16 47 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.87 5.67 -51.93 -0.29 0.57 16 49 H 0.08 1.69 7.89 -51.93 -0.41 1.28 16 LS Contribution 387.65 15.07 5.84 5.84 Total: -1.00 -31.82 387.65 -9.80 -41.62 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.57 Total: 1.63 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -2.12 Total: 8.22 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.49 Total: -57.10 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.43 Total: -16.25 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.82 -9.80 -41.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088188371.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.259 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds