Wall clock time and date at job start Wed Apr 1 2020 05:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.46961 * 2 1 4 4 C 1.35435 * 116.99756 * 179.97438 * 3 2 1 5 5 N 1.32227 * 119.80233 * 0.02562 * 4 3 2 6 6 C 1.31884 * 121.80301 * 179.97438 * 5 4 3 7 7 C 1.38349 * 121.18295 * 0.02562 * 6 5 4 8 8 C 1.38338 * 119.45887 * 359.74482 * 7 6 5 9 9 C 1.39990 * 118.35038 * 0.49139 * 8 7 6 10 10 C 1.47522 * 120.59704 * 179.77958 * 9 8 7 11 11 O 1.21589 * 119.99751 * 136.98299 * 10 9 8 12 12 N 1.34777 * 120.00408 * 316.98923 * 10 9 8 13 13 C 1.47638 * 125.73337 * 174.65147 * 12 10 9 14 14 C 1.55914 * 104.42059 * 155.02442 * 13 12 10 15 15 H 1.08997 * 112.88592 * 158.83908 * 14 13 12 16 16 C 1.53070 * 106.85435 * 283.02308 * 14 13 12 17 17 C 1.52777 * 110.81138 * 163.74999 * 16 14 13 18 18 N 1.47446 * 107.14607 * 301.13018 * 17 16 14 19 19 C 1.36940 * 121.96569 * 238.39053 * 18 17 16 20 20 H 1.07993 * 119.99797 * 27.27826 * 19 18 17 21 21 C 1.38807 * 119.99504 * 207.27793 * 19 18 17 22 22 N 1.31618 * 120.00628 * 18.42771 * 21 19 18 23 23 Si 1.86803 * 119.99607 * 198.42726 * 21 19 18 24 24 H 1.48501 * 109.46974 * 94.99683 * 23 21 19 25 25 H 1.48497 * 109.47246 * 214.99322 * 23 21 19 26 26 H 1.48501 * 109.47382 * 334.99714 * 23 21 19 27 27 C 1.46716 * 116.69182 * 59.64673 * 18 17 16 28 28 C 1.50974 * 111.06439 * 306.40802 * 27 18 17 29 29 H 1.08997 * 108.99357 * 167.68604 * 28 27 18 30 30 C 1.47459 * 125.72781 * 354.64930 * 12 10 9 31 31 H 1.09003 * 109.47013 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47149 * 299.99874 * 1 2 3 33 33 H 1.09003 * 109.47148 * 60.00254 * 1 2 3 34 34 H 1.08998 * 109.47149 * 240.00126 * 2 1 3 35 35 H 1.09003 * 109.47148 * 119.99746 * 2 1 3 36 36 H 1.08000 * 119.40522 * 179.97438 * 6 5 4 37 37 H 1.08002 * 120.27339 * 179.97438 * 7 6 5 38 38 H 1.08010 * 120.82506 * 180.25853 * 8 7 6 39 39 H 1.08999 * 110.44611 * 36.28598 * 13 12 10 40 40 H 1.09006 * 110.44143 * 273.75748 * 13 12 10 41 41 H 1.08995 * 109.21053 * 284.09218 * 16 14 13 42 42 H 1.09003 * 109.21011 * 43.45066 * 16 14 13 43 43 H 1.09003 * 109.79244 * 61.84889 * 17 16 14 44 44 H 1.08993 * 109.79665 * 182.69850 * 17 16 14 45 45 H 0.96996 * 120.00236 * 180.02562 * 22 21 19 46 46 H 1.09005 * 109.15510 * 186.00264 * 27 18 17 47 47 H 1.08997 * 109.16362 * 66.81939 * 27 18 17 48 48 H 1.08998 * 110.06310 * 61.31736 * 30 12 10 49 49 H 1.08994 * 110.06042 * 299.80530 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5247 0.0005 5 7 4.1508 0.4733 0.0005 6 6 5.4635 0.6003 0.0005 7 6 6.0625 1.8474 0.0011 8 6 5.2713 2.9822 -0.0037 9 6 3.8805 2.8229 0.0016 10 6 2.9900 3.9990 0.0017 11 8 2.0067 4.0171 -0.7133 12 7 3.2664 5.0536 0.7942 13 6 2.5306 6.3334 0.8141 14 6 2.7816 6.9033 2.2435 15 1 2.6248 7.9803 2.3040 16 6 1.8727 6.1246 3.1977 17 6 2.3175 6.3142 4.6469 18 7 3.7098 5.8380 4.7401 19 6 4.0772 4.8352 5.5972 20 1 3.3573 4.0863 5.8923 21 6 5.3750 4.7814 6.0867 22 7 6.1417 5.8501 6.0378 23 14 6.0335 3.1921 6.8147 24 1 6.7736 2.4387 5.7707 25 1 6.9487 3.5054 7.9413 26 1 4.9016 2.3685 7.3107 27 6 4.6952 6.5117 3.8871 28 6 4.2568 6.5055 2.4424 29 1 4.8870 7.1923 1.8775 30 6 4.3544 5.1228 1.7871 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 6.0819 -0.2851 0.0009 37 1 7.1390 1.9344 0.0015 38 1 5.7156 3.9667 -0.0076 39 1 1.4660 6.1631 0.6536 40 1 2.9267 7.0121 0.0587 41 1 0.8483 6.4803 3.0875 42 1 1.9131 5.0647 2.9466 43 1 2.2442 7.3667 4.9208 44 1 1.6898 5.7157 5.3071 45 1 7.0487 5.8123 6.3795 46 1 5.6529 5.9981 3.9725 47 1 4.8122 7.5426 4.2210 48 1 5.3194 5.0106 1.2928 49 1 4.2255 4.3433 2.5379 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088188371.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:25 Heat of formation + Delta-G solvation = -21.706493 kcal Electronic energy + Delta-G solvation = -31966.196842 eV Core-core repulsion = 27893.720277 eV Total energy + Delta-G solvation = -4072.476566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.11397 -41.12618 -39.39652 -39.07185 -36.86288 -34.57284 -33.70789 -33.06953 -32.33332 -32.09975 -31.01395 -28.92280 -27.38669 -26.13630 -25.29169 -24.50543 -23.37873 -23.11374 -22.76697 -20.90341 -20.14056 -19.51169 -18.71419 -18.25551 -18.00589 -17.41096 -17.08263 -16.77151 -16.48558 -16.19470 -15.76086 -15.39442 -15.17533 -15.03251 -14.97765 -14.76290 -14.46364 -14.34782 -13.90621 -13.86147 -13.57741 -13.45238 -13.39127 -13.24246 -13.14115 -12.87134 -12.77504 -12.54601 -12.49005 -12.29976 -12.05960 -12.00193 -11.80503 -11.67850 -11.31813 -11.09950 -11.00442 -10.96785 -10.67163 -10.49823 -9.72577 -9.53053 -8.65823 -7.85945 -5.28073 -0.29513 0.18401 1.44514 1.47679 1.55310 1.58219 1.92393 1.96902 2.51187 2.69634 3.13496 3.26966 3.42979 3.65778 3.66198 3.74576 3.81313 3.91381 3.94374 4.00100 4.08353 4.14491 4.27959 4.35096 4.40483 4.43714 4.55333 4.65209 4.66933 4.72870 4.76160 4.83362 4.86027 4.89963 4.95859 5.03799 5.06796 5.12515 5.14343 5.16918 5.17982 5.34353 5.38197 5.43524 5.58623 5.65389 5.78917 6.15677 6.39678 6.41580 6.68401 7.03568 7.17417 7.87123 8.42971 9.19622 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009339 B = 0.004410 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.438155 B = 6347.966355 C = 7424.200613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.060 3.940 3 O -0.314 6.314 4 C 0.344 3.656 5 N -0.556 5.556 6 C 0.158 3.842 7 C -0.205 4.205 8 C -0.012 4.012 9 C -0.227 4.227 10 C 0.582 3.418 11 O -0.569 6.569 12 N -0.606 5.606 13 C 0.111 3.889 14 C -0.079 4.079 15 H 0.118 0.882 16 C -0.115 4.115 17 C 0.138 3.862 18 N -0.604 5.604 19 C -0.254 4.254 20 H 0.053 0.947 21 C -0.037 4.037 22 N -0.926 5.926 23 Si 0.951 3.049 24 H -0.282 1.282 25 H -0.293 1.293 26 H -0.279 1.279 27 C 0.186 3.814 28 C -0.107 4.107 29 H 0.093 0.907 30 C 0.120 3.880 31 H 0.108 0.892 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.204 0.796 37 H 0.183 0.817 38 H 0.163 0.837 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.042 0.958 45 H 0.251 0.749 46 H 0.062 0.938 47 H 0.006 0.994 48 H 0.084 0.916 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.187 -5.954 -14.253 15.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.014 4.014 3 O -0.221 6.221 4 C 0.165 3.835 5 N -0.280 5.280 6 C 0.002 3.998 7 C -0.224 4.224 8 C -0.038 4.038 9 C -0.233 4.233 10 C 0.371 3.629 11 O -0.450 6.450 12 N -0.339 5.339 13 C -0.011 4.011 14 C -0.098 4.098 15 H 0.136 0.864 16 C -0.154 4.154 17 C 0.013 3.987 18 N -0.328 5.328 19 C -0.384 4.384 20 H 0.071 0.929 21 C -0.233 4.233 22 N -0.572 5.572 23 Si 0.780 3.220 24 H -0.209 1.209 25 H -0.219 1.219 26 H -0.204 1.204 27 C 0.060 3.940 28 C -0.127 4.127 29 H 0.112 0.888 30 C -0.002 4.002 31 H 0.127 0.873 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.220 0.780 37 H 0.200 0.800 38 H 0.181 0.819 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.080 0.920 47 H 0.024 0.976 48 H 0.102 0.898 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.219 -6.658 -14.597 16.196 hybrid contribution 0.717 -0.157 0.884 1.149 sum -1.503 -6.815 -13.713 15.387 Atomic orbital electron populations 1.21827 0.91447 1.04328 1.02806 1.22862 0.96234 0.79820 1.02527 1.86344 1.16830 1.32382 1.86501 1.19900 0.84627 0.89069 0.89870 1.67490 1.07920 1.31675 1.20910 1.23402 0.88435 0.99549 0.88457 1.22383 1.03457 0.91851 1.04742 1.22030 0.89883 1.01974 0.89877 1.19940 0.95638 0.91628 1.16094 1.17702 0.84155 0.81699 0.79296 1.90731 1.29287 1.81284 1.43669 1.48554 1.33119 1.14635 1.37574 1.22663 0.96919 0.83717 0.97777 1.22331 0.94272 1.00582 0.92608 0.86357 1.21801 0.98645 0.98951 0.95972 1.21060 0.86140 0.96748 0.94743 1.44337 1.04004 1.40384 1.44026 1.19278 0.96114 1.02010 1.21045 0.92891 1.25513 0.98859 0.99178 0.99750 1.70142 1.08777 1.27482 1.50753 0.85496 0.78036 0.80664 0.77762 1.20863 1.21914 1.20434 1.19943 0.93363 0.94643 0.86045 1.21938 0.97395 0.95346 0.98068 0.88837 1.22014 0.89538 0.99053 0.89605 0.87316 0.92613 0.92041 0.90959 0.91681 0.77961 0.79978 0.81931 0.91364 0.89358 0.90933 0.94831 0.95118 0.93940 0.93923 0.91956 0.97566 0.89771 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 10.28 71.98 0.74 -2.35 16 2 C 0.06 1.56 6.03 71.98 0.43 1.99 16 3 O -0.31 -10.98 8.99 -73.93 -0.66 -11.65 16 4 C 0.34 11.49 7.48 85.13 0.64 12.13 16 5 N -0.56 -15.53 9.21 -308.00 -2.84 -18.36 16 6 C 0.16 3.21 11.17 84.71 0.95 4.16 16 7 C -0.20 -3.89 10.09 22.32 0.23 -3.67 16 8 C -0.01 -0.30 8.58 22.72 0.19 -0.10 16 9 C -0.23 -7.40 5.44 -19.91 -0.11 -7.51 16 10 C 0.58 21.25 7.23 86.69 0.63 21.87 16 11 O -0.57 -24.16 16.51 9.38 0.15 -24.01 16 12 N -0.61 -19.78 2.89 -813.80 -2.35 -22.13 16 13 C 0.11 3.16 6.23 87.17 0.54 3.70 16 14 C -0.08 -2.30 3.67 -9.40 -0.03 -2.34 16 15 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 16 C -0.11 -3.90 4.99 30.54 0.15 -3.75 16 17 C 0.14 5.60 6.57 86.12 0.57 6.17 16 18 N -0.60 -28.84 2.87 -703.30 -2.02 -30.85 16 19 C -0.25 -13.65 9.70 84.03 0.82 -12.83 16 20 H 0.05 2.91 7.89 -2.91 -0.02 2.89 16 21 C -0.04 -1.97 4.92 84.86 0.42 -1.55 16 22 N -0.93 -51.53 11.19 21.65 0.24 -51.29 16 23 Si 0.95 43.60 29.59 68.60 2.03 45.63 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 26 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 27 C 0.19 8.06 4.65 85.68 0.40 8.46 16 28 C -0.11 -3.48 2.70 -10.98 -0.03 -3.51 16 29 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 30 C 0.12 3.92 4.95 86.31 0.43 4.35 16 31 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.71 8.10 -2.39 -0.02 1.69 16 35 H 0.06 1.65 8.10 -2.39 -0.02 1.63 16 36 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.18 2.02 8.06 -2.91 -0.02 1.99 16 38 H 0.16 3.34 6.05 -2.91 -0.02 3.33 16 39 H 0.07 2.07 7.84 -2.39 -0.02 2.05 16 40 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 43 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.04 1.76 7.96 -2.39 -0.02 1.74 16 45 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 46 H 0.06 3.06 6.00 -2.38 -0.01 3.05 16 47 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 48 H 0.08 2.30 5.67 -2.39 -0.01 2.29 16 49 H 0.05 1.89 7.89 -2.39 -0.02 1.87 16 Total: -1.00 -72.37 387.65 2.46 -69.91 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.95 Total: 17.53 kcal Atomic # 6 Polarization: 18.26 SS G_CDS: 6.95 Total: 25.21 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -6.96 Total: -122.63 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: -0.51 Total: -35.65 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -72.37 2.46 -69.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088188371.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.207 kcal (2) G-P(sol) polarization free energy of solvation -72.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds