Wall clock time and date at job start Wed Apr 1 2020 05:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42907 * 109.47025 * 2 1 4 4 C 1.35646 * 116.99866 * 180.02562 * 3 2 1 5 5 C 1.39338 * 120.54471 * 359.97309 * 4 3 2 6 6 C 1.38305 * 118.44198 * 180.02562 * 5 4 3 7 7 C 1.38755 * 119.44305 * 359.97438 * 6 5 4 8 8 N 1.31380 * 121.07037 * 0.02696 * 7 6 5 9 9 C 1.32858 * 121.69219 * 359.97438 * 8 7 6 10 10 C 1.47835 * 119.78003 * 180.02562 * 9 8 7 11 11 O 1.21556 * 119.99813 * 180.02562 * 10 9 8 12 12 N 1.34778 * 120.00122 * 0.02562 * 10 9 8 13 13 C 1.47377 * 125.74138 * 179.97438 * 12 10 9 14 14 C 1.55412 * 106.73962 * 179.02784 * 13 12 10 15 15 H 1.08997 * 112.76216 * 147.11999 * 14 13 12 16 16 C 1.52914 * 106.56605 * 270.99267 * 14 13 12 17 17 C 1.51577 * 111.65951 * 169.89016 * 16 14 13 18 18 N 1.44348 * 113.01544 * 320.11860 * 17 16 14 19 19 C 1.36932 * 116.42708 * 188.03589 * 18 17 16 20 20 H 1.08003 * 120.00210 * 152.26320 * 19 18 17 21 21 C 1.38812 * 119.99932 * 332.25537 * 19 18 17 22 22 N 1.31623 * 119.99947 * 336.19311 * 21 19 18 23 23 Si 1.86802 * 120.00248 * 156.18337 * 21 19 18 24 24 H 1.48505 * 109.46680 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46908 * 119.99998 * 23 21 19 26 26 H 1.48496 * 109.47466 * 240.00437 * 23 21 19 27 27 C 1.43980 * 127.14794 * 8.00672 * 18 17 16 28 28 C 1.49781 * 116.29840 * 2.91796 * 27 18 17 29 29 H 1.09003 * 109.26333 * 141.36177 * 28 27 18 30 30 C 1.47932 * 125.73938 * 359.68354 * 12 10 9 31 31 H 1.08989 * 109.47128 * 299.99846 * 1 2 3 32 32 H 1.09003 * 109.47283 * 60.00534 * 1 2 3 33 33 H 1.08998 * 109.46592 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47068 * 239.99990 * 2 1 3 35 35 H 1.08997 * 109.47623 * 119.99687 * 2 1 3 36 36 H 1.08007 * 120.77671 * 0.02562 * 5 4 3 37 37 H 1.07999 * 120.27260 * 179.97438 * 6 5 4 38 38 H 1.08007 * 119.46455 * 180.02562 * 7 6 5 39 39 H 1.09002 * 110.00539 * 298.34568 * 13 12 10 40 40 H 1.09005 * 110.00888 * 59.70671 * 13 12 10 41 41 H 1.08996 * 109.04389 * 290.44851 * 16 14 13 42 42 H 1.08994 * 109.04107 * 49.39933 * 16 14 13 43 43 H 1.08997 * 108.77961 * 81.03520 * 17 16 14 44 44 H 1.09008 * 108.77013 * 199.32582 * 17 16 14 45 45 H 0.96997 * 119.99403 * 179.97438 * 22 21 19 46 46 H 1.09003 * 108.10968 * 124.67085 * 27 18 17 47 47 H 1.09003 * 108.11627 * 241.33705 * 27 18 17 48 48 H 1.08998 * 110.56813 * 274.18138 * 30 12 10 49 49 H 1.09005 * 110.56905 * 37.04375 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5251 -0.0005 5 6 4.2103 0.4282 -0.0005 6 6 5.5739 0.6596 -0.0005 7 6 6.0442 1.9650 -0.0011 8 7 5.2153 2.9843 -0.0011 9 6 3.8979 2.8126 -0.0011 10 6 3.0039 3.9900 -0.0017 11 8 1.7980 3.8375 -0.0012 12 7 3.5261 5.2326 -0.0028 13 6 2.7568 6.4896 -0.0040 14 6 3.7924 7.6482 0.0202 15 1 3.4521 8.5295 -0.5234 16 6 4.0805 7.9447 1.4924 17 6 5.2567 8.8871 1.6536 18 7 6.3319 8.6105 0.7310 19 6 7.4956 9.3057 0.9253 20 1 8.4380 8.8785 0.6157 21 6 7.4640 10.5595 1.5201 22 7 6.3645 11.2816 1.4753 23 14 8.9818 11.2218 2.3844 24 1 10.0778 10.2238 2.2942 25 1 9.4096 12.4864 1.7339 26 1 8.6649 11.4819 3.8117 27 6 6.3155 7.6837 -0.3707 28 6 5.0205 6.9744 -0.6220 29 1 4.8604 6.8879 -1.6967 30 6 4.9678 5.5640 0.0031 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.8206 -0.5791 -0.0005 37 1 6.2667 -0.1689 -0.0001 38 1 7.1090 2.1461 -0.0016 39 1 2.1474 6.5530 -0.9056 40 1 2.1213 6.5389 0.8803 41 1 3.1976 8.3976 1.9434 42 1 4.3022 7.0096 2.0067 43 1 4.9121 9.9088 1.4945 44 1 5.6386 8.8006 2.6709 45 1 6.3424 12.1576 1.8913 46 1 6.5844 8.2285 -1.2758 47 1 7.0823 6.9301 -0.1911 48 1 5.3528 5.5802 1.0227 49 1 5.5264 4.8542 -0.6070 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088223687.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:38 Heat of formation + Delta-G solvation = 8.177171 kcal Electronic energy + Delta-G solvation = -31055.513647 eV Core-core repulsion = 26984.332935 eV Total energy + Delta-G solvation = -4071.180713 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.17852 -39.86164 -38.53821 -37.98600 -35.50009 -33.01732 -32.39694 -32.19000 -31.36074 -30.38716 -29.94013 -27.77897 -25.68409 -25.00160 -24.31987 -23.05362 -22.48924 -21.92481 -21.38694 -19.90399 -18.46557 -17.73493 -17.42648 -17.03831 -16.79737 -16.56077 -15.69155 -15.47284 -15.14968 -14.84664 -14.59590 -14.39653 -13.93668 -13.83369 -13.70071 -13.48491 -13.08261 -12.97494 -12.91834 -12.85588 -12.76291 -12.57898 -12.16465 -12.05236 -11.70584 -11.61024 -11.25858 -11.11878 -11.01426 -10.70952 -10.41450 -10.27035 -10.16013 -10.11547 -10.02407 -9.66665 -9.55128 -9.48391 -9.36538 -8.75203 -8.41903 -8.26577 -6.53512 -5.55600 -3.21131 0.46220 0.94984 2.75452 2.79454 3.09292 3.41137 3.49496 3.52363 3.72248 4.05325 4.25937 4.36015 4.53955 4.55279 4.60769 4.71054 4.82826 4.85422 4.95770 5.02257 5.15215 5.28488 5.31679 5.40845 5.46860 5.54394 5.55755 5.64891 5.69522 5.77668 5.81541 5.95834 6.01178 6.09020 6.20463 6.24514 6.32395 6.47068 6.58762 6.66337 6.70900 6.78576 6.94159 6.95291 6.99091 7.38851 7.53375 7.74973 7.87970 8.00715 8.34643 8.60107 9.35881 10.06667 10.36399 11.29958 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020086 B = 0.002626 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.698007 B =10661.074399 C =11628.672882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.272 6.272 4 C 0.137 3.863 5 C -0.178 4.178 6 C -0.109 4.109 7 C 0.056 3.944 8 N -0.410 5.410 9 C 0.051 3.949 10 C 0.581 3.419 11 O -0.527 6.527 12 N -0.598 5.598 13 C 0.110 3.890 14 C -0.081 4.081 15 H 0.097 0.903 16 C -0.122 4.122 17 C 0.157 3.843 18 N -0.585 5.585 19 C -0.264 4.264 20 H 0.065 0.935 21 C 0.004 3.996 22 N -0.890 5.890 23 Si 0.897 3.103 24 H -0.277 1.277 25 H -0.292 1.292 26 H -0.289 1.289 27 C 0.178 3.822 28 C -0.103 4.103 29 H 0.071 0.929 30 C 0.114 3.886 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.167 0.833 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.080 0.920 44 H 0.017 0.983 45 H 0.251 0.749 46 H 0.022 0.978 47 H 0.015 0.985 48 H 0.071 0.929 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.871 -24.287 -3.966 25.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.182 6.182 4 C 0.086 3.914 5 C -0.205 4.205 6 C -0.129 4.129 7 C -0.104 4.104 8 N -0.122 5.122 9 C -0.088 4.088 10 C 0.368 3.632 11 O -0.403 6.403 12 N -0.331 5.331 13 C -0.012 4.012 14 C -0.100 4.100 15 H 0.116 0.884 16 C -0.160 4.160 17 C 0.032 3.968 18 N -0.310 5.310 19 C -0.394 4.394 20 H 0.083 0.917 21 C -0.195 4.195 22 N -0.534 5.534 23 Si 0.727 3.273 24 H -0.202 1.202 25 H -0.219 1.219 26 H -0.216 1.216 27 C 0.052 3.948 28 C -0.123 4.123 29 H 0.089 0.911 30 C -0.008 4.008 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.184 0.816 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.097 0.903 44 H 0.035 0.965 45 H 0.062 0.938 46 H 0.040 0.960 47 H 0.033 0.967 48 H 0.090 0.910 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.562 -23.334 -3.915 24.839 hybrid contribution 0.698 -0.801 0.576 1.209 sum -6.863 -24.135 -3.339 25.313 Atomic orbital electron populations 1.21735 0.92220 1.02587 1.04170 1.22938 0.96737 0.82094 1.01151 1.86435 1.16883 1.28543 1.86317 1.19977 0.84225 0.93657 0.93493 1.21728 0.94191 0.98601 1.05930 1.22210 0.95207 0.98971 0.96495 1.22849 1.00274 0.87845 0.99442 1.67995 1.01703 1.34522 1.07959 1.20682 0.90390 0.90971 1.06758 1.17228 0.86691 0.81305 0.78015 1.90814 1.13632 1.85082 1.50774 1.48501 1.09293 1.04483 1.70823 1.22443 0.94534 0.82752 1.01506 1.22068 0.93719 0.96113 0.98111 0.88433 1.21671 0.99902 1.00210 0.94227 1.20240 0.86209 0.98999 0.91367 1.42681 1.13485 1.45449 1.29373 1.19166 0.85935 0.97163 1.37145 0.91702 1.24981 0.96874 0.95411 1.02272 1.70003 1.27395 1.10281 1.45739 0.86305 0.83002 0.78442 0.79534 1.20244 1.21882 1.21619 1.19228 0.92466 0.91921 0.91205 1.21714 0.96607 0.94391 0.99546 0.91103 1.22824 0.80129 0.95830 1.02052 0.91209 0.91232 0.90433 0.91991 0.91980 0.83812 0.84011 0.81593 0.91853 0.91388 0.92503 0.93389 0.90262 0.96501 0.93829 0.96001 0.96711 0.91029 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.05 0.37 5.48 37.16 0.20 0.57 16 3 O -0.27 -3.54 8.20 -40.59 -0.33 -3.87 16 4 C 0.14 1.73 6.71 -38.56 -0.26 1.47 16 5 C -0.18 -1.56 9.13 -39.15 -0.36 -1.92 16 6 C -0.11 -0.83 10.10 -39.37 -0.40 -1.23 16 7 C 0.06 0.55 11.17 -17.55 -0.20 0.35 16 8 N -0.41 -5.47 6.60 -9.71 -0.06 -5.54 16 9 C 0.05 0.75 6.73 -82.88 -0.56 0.20 16 10 C 0.58 10.09 7.84 -12.33 -0.10 9.99 16 11 O -0.53 -10.30 15.47 -16.63 -0.26 -10.55 16 12 N -0.60 -10.03 3.34 -170.59 -0.57 -10.60 16 13 C 0.11 1.78 6.24 -2.28 -0.01 1.76 16 14 C -0.08 -1.41 3.65 -88.81 -0.32 -1.74 16 15 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 16 C -0.12 -2.35 4.78 -27.50 -0.13 -2.48 16 17 C 0.16 3.77 5.11 -5.91 -0.03 3.74 16 18 N -0.59 -14.63 3.23 -179.69 -0.58 -15.21 16 19 C -0.26 -7.27 9.26 -15.06 -0.14 -7.41 16 20 H 0.07 1.77 7.94 -52.48 -0.42 1.35 16 21 C 0.00 0.11 4.96 -17.43 -0.09 0.03 16 22 N -0.89 -25.70 10.90 55.49 0.60 -25.10 16 23 Si 0.90 21.77 29.62 -169.99 -5.03 16.73 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 C 0.18 3.74 5.75 -6.98 -0.04 3.70 16 28 C -0.10 -1.80 2.84 -90.93 -0.26 -2.06 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 C 0.11 1.86 4.71 -2.54 -0.01 1.85 16 31 H 0.07 0.56 8.14 -51.94 -0.42 0.14 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.38 7.70 -51.93 -0.40 -0.02 16 35 H 0.06 0.39 7.70 -51.93 -0.40 -0.01 16 36 H 0.14 0.82 6.46 -52.48 -0.34 0.48 16 37 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 38 H 0.17 1.17 8.06 -52.48 -0.42 0.75 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.11 7.79 -51.93 -0.40 0.70 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.92 6.60 -51.93 -0.34 0.58 16 43 H 0.08 2.16 5.78 -51.93 -0.30 1.86 16 44 H 0.02 0.44 8.11 -51.92 -0.42 0.02 16 45 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.02 0.48 8.13 -51.93 -0.42 0.06 16 47 H 0.02 0.31 7.80 -51.93 -0.40 -0.09 16 48 H 0.07 1.28 7.16 -51.93 -0.37 0.91 16 49 H 0.10 1.55 5.89 -51.93 -0.31 1.25 16 LS Contribution 381.89 15.07 5.75 5.75 Total: -1.00 -33.51 381.89 -10.26 -43.77 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -7.47 Total: -1.55 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -2.31 Total: 6.15 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.61 Total: -56.44 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.59 Total: -14.42 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.51 -10.26 -43.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088223687.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.944 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds