Wall clock time and date at job start Wed Apr 1 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42907 * 109.47025 * 2 1 4 4 C 1.35646 * 116.99866 * 180.02562 * 3 2 1 5 5 C 1.39338 * 120.54471 * 359.97309 * 4 3 2 6 6 C 1.38305 * 118.44198 * 180.02562 * 5 4 3 7 7 C 1.38755 * 119.44305 * 359.97438 * 6 5 4 8 8 N 1.31380 * 121.07037 * 0.02696 * 7 6 5 9 9 C 1.32858 * 121.69219 * 359.97438 * 8 7 6 10 10 C 1.47835 * 119.78003 * 180.02562 * 9 8 7 11 11 O 1.21556 * 119.99813 * 180.02562 * 10 9 8 12 12 N 1.34778 * 120.00122 * 0.02562 * 10 9 8 13 13 C 1.47377 * 125.74138 * 179.97438 * 12 10 9 14 14 C 1.55412 * 106.73962 * 179.02784 * 13 12 10 15 15 H 1.08997 * 112.76216 * 147.11999 * 14 13 12 16 16 C 1.52914 * 106.56605 * 270.99267 * 14 13 12 17 17 C 1.51577 * 111.65951 * 169.89016 * 16 14 13 18 18 N 1.44348 * 113.01544 * 320.11860 * 17 16 14 19 19 C 1.36932 * 116.42708 * 188.03589 * 18 17 16 20 20 H 1.08003 * 120.00210 * 152.26320 * 19 18 17 21 21 C 1.38812 * 119.99932 * 332.25537 * 19 18 17 22 22 N 1.31623 * 119.99947 * 336.19311 * 21 19 18 23 23 Si 1.86802 * 120.00248 * 156.18337 * 21 19 18 24 24 H 1.48505 * 109.46680 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46908 * 119.99998 * 23 21 19 26 26 H 1.48496 * 109.47466 * 240.00437 * 23 21 19 27 27 C 1.43980 * 127.14794 * 8.00672 * 18 17 16 28 28 C 1.49781 * 116.29840 * 2.91796 * 27 18 17 29 29 H 1.09003 * 109.26333 * 141.36177 * 28 27 18 30 30 C 1.47932 * 125.73938 * 359.68354 * 12 10 9 31 31 H 1.08989 * 109.47128 * 299.99846 * 1 2 3 32 32 H 1.09003 * 109.47283 * 60.00534 * 1 2 3 33 33 H 1.08998 * 109.46592 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47068 * 239.99990 * 2 1 3 35 35 H 1.08997 * 109.47623 * 119.99687 * 2 1 3 36 36 H 1.08007 * 120.77671 * 0.02562 * 5 4 3 37 37 H 1.07999 * 120.27260 * 179.97438 * 6 5 4 38 38 H 1.08007 * 119.46455 * 180.02562 * 7 6 5 39 39 H 1.09002 * 110.00539 * 298.34568 * 13 12 10 40 40 H 1.09005 * 110.00888 * 59.70671 * 13 12 10 41 41 H 1.08996 * 109.04389 * 290.44851 * 16 14 13 42 42 H 1.08994 * 109.04107 * 49.39933 * 16 14 13 43 43 H 1.08997 * 108.77961 * 81.03520 * 17 16 14 44 44 H 1.09008 * 108.77013 * 199.32582 * 17 16 14 45 45 H 0.96997 * 119.99403 * 179.97438 * 22 21 19 46 46 H 1.09003 * 108.10968 * 124.67085 * 27 18 17 47 47 H 1.09003 * 108.11627 * 241.33705 * 27 18 17 48 48 H 1.08998 * 110.56813 * 274.18138 * 30 12 10 49 49 H 1.09005 * 110.56905 * 37.04375 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5251 -0.0005 5 6 4.2103 0.4282 -0.0005 6 6 5.5739 0.6596 -0.0005 7 6 6.0442 1.9650 -0.0011 8 7 5.2153 2.9843 -0.0011 9 6 3.8979 2.8126 -0.0011 10 6 3.0039 3.9900 -0.0017 11 8 1.7980 3.8375 -0.0012 12 7 3.5261 5.2326 -0.0028 13 6 2.7568 6.4896 -0.0040 14 6 3.7924 7.6482 0.0202 15 1 3.4521 8.5295 -0.5234 16 6 4.0805 7.9447 1.4924 17 6 5.2567 8.8871 1.6536 18 7 6.3319 8.6105 0.7310 19 6 7.4956 9.3057 0.9253 20 1 8.4380 8.8785 0.6157 21 6 7.4640 10.5595 1.5201 22 7 6.3645 11.2816 1.4753 23 14 8.9818 11.2218 2.3844 24 1 10.0778 10.2238 2.2942 25 1 9.4096 12.4864 1.7339 26 1 8.6649 11.4819 3.8117 27 6 6.3155 7.6837 -0.3707 28 6 5.0205 6.9744 -0.6220 29 1 4.8604 6.8879 -1.6967 30 6 4.9678 5.5640 0.0031 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.8206 -0.5791 -0.0005 37 1 6.2667 -0.1689 -0.0001 38 1 7.1090 2.1461 -0.0016 39 1 2.1474 6.5530 -0.9056 40 1 2.1213 6.5389 0.8803 41 1 3.1976 8.3976 1.9434 42 1 4.3022 7.0096 2.0067 43 1 4.9121 9.9088 1.4945 44 1 5.6386 8.8006 2.6709 45 1 6.3424 12.1576 1.8913 46 1 6.5844 8.2285 -1.2758 47 1 7.0823 6.9301 -0.1911 48 1 5.3528 5.5802 1.0227 49 1 5.5264 4.8542 -0.6070 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088223687.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:37 Heat of formation + Delta-G solvation = -11.531787 kcal Electronic energy + Delta-G solvation = -31056.368292 eV Core-core repulsion = 26984.332935 eV Total energy + Delta-G solvation = -4072.035357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.11406 -41.14200 -39.47746 -39.24402 -37.23202 -34.35187 -33.49193 -33.05986 -32.91701 -31.92119 -30.96464 -29.29104 -27.18569 -26.16320 -25.37917 -24.44214 -23.60113 -23.13732 -22.87663 -21.03831 -19.43582 -19.15545 -18.88882 -18.49808 -17.73029 -17.36383 -17.05551 -16.83684 -16.55476 -16.05444 -15.84109 -15.60641 -15.38258 -15.31258 -14.83092 -14.73971 -14.49203 -14.34164 -14.17779 -13.71044 -13.67398 -13.55763 -13.44374 -13.37785 -13.15981 -12.91622 -12.81450 -12.51601 -12.29202 -12.16135 -12.01427 -11.84919 -11.77743 -11.53887 -11.34319 -11.20982 -11.10962 -10.82486 -10.54528 -10.35443 -9.77172 -9.40901 -8.61970 -7.65103 -5.36100 -0.36528 0.22451 1.47009 1.49825 1.60423 1.72343 1.87082 2.09696 2.54016 2.81016 3.08593 3.25809 3.48075 3.56073 3.60487 3.74095 3.79933 3.83762 3.99691 4.01952 4.10898 4.14513 4.18163 4.32810 4.39568 4.41707 4.49909 4.61955 4.64050 4.74961 4.77506 4.85866 4.88123 4.90028 4.97226 5.00640 5.04750 5.09071 5.10373 5.21270 5.28596 5.33242 5.36492 5.43289 5.50961 5.72707 5.97070 6.23439 6.44045 6.48433 6.73065 7.11885 7.25410 8.08381 8.28413 9.16602 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020086 B = 0.002626 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.698007 B =10661.074399 C =11628.672882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.037 3.963 3 O -0.307 6.307 4 C 0.127 3.873 5 C -0.170 4.170 6 C -0.084 4.084 7 C 0.050 3.950 8 N -0.437 5.437 9 C 0.006 3.994 10 C 0.575 3.425 11 O -0.560 6.560 12 N -0.603 5.603 13 C 0.117 3.883 14 C -0.076 4.076 15 H 0.098 0.902 16 C -0.110 4.110 17 C 0.166 3.834 18 N -0.597 5.597 19 C -0.280 4.280 20 H 0.065 0.935 21 C -0.046 4.046 22 N -0.918 5.918 23 Si 0.960 3.040 24 H -0.267 1.267 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.178 3.822 28 C -0.099 4.099 29 H 0.089 0.911 30 C 0.132 3.868 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.180 0.820 37 H 0.189 0.811 38 H 0.193 0.807 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.050 0.950 44 H -0.011 1.011 45 H 0.249 0.751 46 H 0.012 0.988 47 H 0.022 0.978 48 H 0.054 0.946 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.684 -27.778 -4.434 28.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.038 4.038 3 O -0.218 6.218 4 C 0.076 3.924 5 C -0.197 4.197 6 C -0.104 4.104 7 C -0.112 4.112 8 N -0.149 5.149 9 C -0.130 4.130 10 C 0.364 3.636 11 O -0.439 6.439 12 N -0.335 5.335 13 C -0.006 4.006 14 C -0.095 4.095 15 H 0.116 0.884 16 C -0.148 4.148 17 C 0.041 3.959 18 N -0.321 5.321 19 C -0.410 4.410 20 H 0.082 0.918 21 C -0.243 4.243 22 N -0.564 5.564 23 Si 0.789 3.211 24 H -0.191 1.191 25 H -0.218 1.218 26 H -0.219 1.219 27 C 0.053 3.947 28 C -0.119 4.119 29 H 0.107 0.893 30 C 0.010 3.990 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.127 0.873 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.197 0.803 37 H 0.206 0.794 38 H 0.210 0.790 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.007 0.993 45 H 0.059 0.941 46 H 0.030 0.970 47 H 0.040 0.960 48 H 0.072 0.928 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.380 -26.839 -4.396 27.935 hybrid contribution 0.389 0.140 0.710 0.821 sum -5.992 -26.699 -3.686 27.611 Atomic orbital electron populations 1.21784 0.92148 1.04110 1.02627 1.23275 0.96910 0.80485 1.03094 1.86396 1.17494 1.31493 1.86403 1.20170 0.84697 0.93997 0.93533 1.22160 0.94202 0.98973 1.04319 1.22719 0.95450 0.99363 0.92861 1.23453 1.01042 0.88294 0.98452 1.67817 1.01432 1.36545 1.09075 1.20329 0.90860 0.90761 1.11100 1.17784 0.86870 0.82003 0.76924 1.90770 1.15124 1.85663 1.52389 1.48555 1.09242 1.04654 1.71061 1.22328 0.94067 0.82229 1.01942 1.21993 0.94248 0.96691 0.96602 0.88370 1.21515 0.98316 0.99014 0.95941 1.19983 0.87385 0.98713 0.89829 1.42917 1.13055 1.45618 1.30535 1.19477 0.86918 0.97434 1.37178 0.91763 1.25730 0.99632 0.95857 1.03048 1.70159 1.29213 1.10460 1.46523 0.85320 0.80054 0.77810 0.77947 1.19136 1.21762 1.21853 1.19284 0.94672 0.91331 0.89427 1.21632 0.94805 0.94686 1.00764 0.89287 1.22606 0.80207 0.95117 1.01071 0.92829 0.92694 0.87308 0.89803 0.89982 0.80297 0.79398 0.79050 0.90894 0.91568 0.91124 0.93345 0.93304 0.99328 0.94138 0.96996 0.95970 0.92755 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 10.28 71.98 0.74 -1.24 16 2 C 0.04 0.51 5.48 71.98 0.39 0.91 16 3 O -0.31 -7.84 8.20 -68.62 -0.56 -8.40 16 4 C 0.13 3.04 6.71 22.93 0.15 3.19 16 5 C -0.17 -2.33 9.13 22.55 0.21 -2.13 16 6 C -0.08 -0.89 10.10 22.41 0.23 -0.67 16 7 C 0.05 0.81 11.17 84.88 0.95 1.76 16 8 N -0.44 -11.11 6.60 -184.63 -1.22 -12.33 16 9 C 0.01 0.16 6.73 41.93 0.28 0.45 16 10 C 0.58 20.37 7.84 86.78 0.68 21.05 16 11 O -0.56 -22.64 15.47 17.10 0.26 -22.38 16 12 N -0.60 -20.32 3.34 -811.90 -2.71 -23.03 16 13 C 0.12 3.77 6.24 87.04 0.54 4.32 16 14 C -0.08 -2.66 3.65 -9.62 -0.04 -2.69 16 15 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 16 C -0.11 -4.30 4.78 30.10 0.14 -4.16 16 17 C 0.17 8.27 5.11 86.31 0.44 8.71 16 18 N -0.60 -30.46 3.23 -722.41 -2.33 -32.79 16 19 C -0.28 -15.64 9.26 84.03 0.78 -14.86 16 20 H 0.06 3.53 7.94 -2.91 -0.02 3.50 16 21 C -0.05 -2.59 4.96 84.86 0.42 -2.17 16 22 N -0.92 -54.48 10.90 21.65 0.24 -54.24 16 23 Si 0.96 45.37 29.62 68.60 2.03 47.40 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 26 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 27 C 0.18 7.53 5.75 85.81 0.49 8.02 16 28 C -0.10 -3.44 2.84 -10.99 -0.03 -3.47 16 29 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 30 C 0.13 4.29 4.71 86.57 0.41 4.69 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 0.77 7.70 -2.39 -0.02 0.76 16 35 H 0.08 0.79 7.70 -2.39 -0.02 0.77 16 36 H 0.18 1.09 6.46 -2.91 -0.02 1.07 16 37 H 0.19 0.28 8.06 -2.91 -0.02 0.26 16 38 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 39 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.07 2.17 7.79 -2.38 -0.02 2.15 16 41 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.05 1.89 6.60 -2.39 -0.02 1.87 16 43 H 0.05 2.78 5.78 -2.39 -0.01 2.77 16 44 H -0.01 -0.62 8.11 -2.38 -0.02 -0.64 16 45 H 0.25 14.25 8.31 -92.71 -0.77 13.47 16 46 H 0.01 0.53 8.13 -2.39 -0.02 0.51 16 47 H 0.02 0.92 7.80 -2.39 -0.02 0.90 16 48 H 0.05 1.95 7.16 -2.39 -0.02 1.94 16 49 H 0.11 3.41 5.89 -2.38 -0.01 3.40 16 Total: -1.00 -76.84 381.89 3.46 -73.38 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.95 Total: 10.69 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 6.79 Total: 21.70 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -6.02 Total: -122.40 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.30 Total: -30.78 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -76.84 3.46 -73.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088223687.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.850 kcal (2) G-P(sol) polarization free energy of solvation -76.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds