Wall clock time and date at job start Wed Apr 1 2020 05:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42899 * 109.47396 * 2 1 4 4 C 1.35495 * 117.00168 * 179.97438 * 3 2 1 5 5 C 1.39167 * 119.52833 * 180.02562 * 4 3 2 6 6 C 1.37956 * 119.26617 * 179.74139 * 5 4 3 7 7 C 1.40287 * 118.35396 * 0.50387 * 6 5 4 8 8 C 1.47616 * 120.49876 * 179.74830 * 7 6 5 9 9 O 1.21586 * 119.99854 * 345.87327 * 8 7 6 10 10 N 1.34772 * 120.00240 * 165.86919 * 8 7 6 11 11 C 1.47189 * 126.70154 * 354.17947 * 10 8 7 12 12 C 1.53744 * 106.43124 * 211.40309 * 11 10 8 13 13 H 1.08999 * 112.28588 * 103.78767 * 12 11 10 14 14 C 1.54879 * 108.86314 * 229.56873 * 12 11 10 15 15 N 1.48332 * 104.11480 * 137.55623 * 14 12 11 16 16 C 1.36935 * 128.19680 * 138.15706 * 15 14 12 17 17 H 1.07999 * 120.00617 * 195.19067 * 16 15 14 18 18 C 1.38814 * 119.99923 * 15.18667 * 16 15 14 19 19 N 1.31623 * 120.00072 * 10.51365 * 18 16 15 20 20 Si 1.86798 * 120.00068 * 190.23634 * 18 16 15 21 21 H 1.48502 * 109.47171 * 84.98873 * 20 18 16 22 22 H 1.48502 * 109.47063 * 204.98894 * 20 18 16 23 23 H 1.48496 * 109.47222 * 324.98885 * 20 18 16 24 24 C 1.48329 * 103.60603 * 317.90165 * 15 14 12 25 25 C 1.54448 * 104.32507 * 42.06429 * 24 15 14 26 26 C 1.53006 * 112.29957 * 97.55331 * 25 24 15 27 27 C 1.47190 * 126.70427 * 174.21944 * 10 8 7 28 28 C 1.39521 * 119.00303 * 359.48105 * 7 6 5 29 29 N 1.31666 * 120.62775 * 0.27247 * 28 7 6 30 30 H 1.08999 * 109.47570 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47280 * 299.99964 * 1 2 3 32 32 H 1.09002 * 109.47613 * 59.99766 * 1 2 3 33 33 H 1.09006 * 109.46760 * 240.00021 * 2 1 3 34 34 H 1.08998 * 109.47139 * 120.00331 * 2 1 3 35 35 H 1.07997 * 120.36920 * 0.03031 * 5 4 3 36 36 H 1.07998 * 120.82235 * 180.25896 * 6 5 4 37 37 H 1.09007 * 110.06902 * 330.64186 * 11 10 8 38 38 H 1.08998 * 110.06959 * 92.10323 * 11 10 8 39 39 H 1.08997 * 110.59236 * 18.90381 * 14 12 11 40 40 H 1.08993 * 110.53047 * 256.18734 * 14 12 11 41 41 H 0.96997 * 119.99780 * 179.71994 * 19 18 16 42 42 H 1.09004 * 110.46414 * 160.77715 * 24 15 14 43 43 H 1.08999 * 110.46320 * 283.22874 * 24 15 14 44 44 H 1.09001 * 109.46609 * 61.01629 * 26 25 24 45 45 H 1.08996 * 109.47085 * 181.00883 * 26 25 24 46 46 H 1.08991 * 109.47100 * 301.01849 * 26 25 24 47 47 H 1.08995 * 110.06929 * 29.35123 * 27 10 8 48 48 H 1.09007 * 110.11201 * 267.86166 * 27 10 8 49 49 H 1.08004 * 119.68841 * 180.25307 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3496 1.5247 0.0005 5 6 3.8709 2.8151 0.0011 6 6 5.2394 2.9895 0.0071 7 6 6.0565 1.8492 0.0015 8 6 7.5267 1.9810 0.0020 9 8 8.0410 3.0535 -0.2500 10 7 8.2990 0.9125 0.2817 11 6 7.8387 -0.4148 0.7208 12 6 8.9430 -0.9795 1.6294 13 1 8.6783 -0.9237 2.6852 14 6 9.2838 -2.4182 1.1683 15 7 10.7647 -2.4766 1.2299 16 6 11.5535 -3.4967 1.6907 17 1 12.5966 -3.3178 1.9060 18 6 11.0124 -4.7607 1.8813 19 7 9.8072 -5.0357 1.4292 20 14 11.9977 -6.0739 2.7724 21 1 11.8068 -5.9268 4.2378 22 1 11.5319 -7.4176 2.3450 23 1 13.4376 -5.9212 2.4431 24 6 11.1890 -1.1709 0.6683 25 6 10.2118 -0.1507 1.2924 26 6 10.8069 0.5500 2.5155 27 6 9.7676 0.8452 0.2086 28 6 5.4586 0.5886 0.0013 29 7 4.1474 0.4681 0.0008 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8932 -0.5139 -0.8901 34 1 1.8932 -0.5139 0.8899 35 1 3.2115 3.6704 0.0016 36 1 5.6710 3.9795 0.0119 37 1 6.9068 -0.3219 1.2786 38 1 7.6944 -1.0650 -0.1420 39 1 8.9380 -2.5860 0.1483 40 1 8.8451 -3.1507 1.8457 41 1 9.4308 -5.9201 1.5588 42 1 12.2143 -0.9451 0.9614 43 1 11.0963 -1.1751 -0.4178 44 1 11.7014 1.0986 2.2204 45 1 10.0749 1.2440 2.9285 46 1 11.0683 -0.1932 3.2685 47 1 10.1973 1.8275 0.4046 48 1 10.0781 0.4910 -0.7745 49 1 6.0771 -0.2968 0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091713243.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:31 Heat of formation + Delta-G solvation = 13.915632 kcal Electronic energy + Delta-G solvation = -30620.556224 eV Core-core repulsion = 26549.624350 eV Total energy + Delta-G solvation = -4070.931874 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.17818 -40.16535 -38.66354 -37.74906 -35.15929 -33.05016 -32.73910 -32.27266 -31.12376 -30.30935 -29.86486 -26.73097 -25.93778 -25.44031 -24.39327 -24.10512 -22.50724 -22.27563 -20.63502 -19.82928 -18.77499 -18.63622 -17.65372 -16.76508 -16.63210 -16.56451 -15.87623 -15.36976 -15.02850 -14.83094 -14.29872 -14.24832 -14.20010 -14.05037 -13.74582 -13.52409 -13.30753 -13.16383 -12.85753 -12.73500 -12.55950 -12.38544 -12.09944 -11.86766 -11.72535 -11.64257 -11.35812 -11.04737 -11.01948 -10.86404 -10.72872 -10.32308 -10.22648 -10.18916 -10.05261 -9.92288 -9.82806 -9.72036 -9.60400 -8.81890 -8.72297 -8.53225 -6.92248 -5.84626 -3.18493 0.55556 0.95775 2.68618 2.79025 3.01200 3.35353 3.41190 3.42266 3.63996 3.98437 4.40348 4.42365 4.61809 4.68590 4.71021 4.73786 4.80485 4.85766 4.97290 5.09555 5.17605 5.32164 5.35113 5.39432 5.43882 5.51507 5.52082 5.56789 5.60021 5.64520 5.71974 5.81835 5.90790 5.96852 6.02529 6.08635 6.10105 6.24174 6.31268 6.38708 6.51662 6.62930 6.70068 6.84128 6.92175 7.21324 7.44517 7.51209 7.60375 7.65418 8.14043 8.16052 9.04996 9.68450 10.45901 11.29279 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012214 B = 0.002794 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.820352 B =10017.425759 C =12011.479360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.305 6.305 4 C 0.341 3.659 5 C -0.201 4.201 6 C 0.015 3.985 7 C -0.222 4.222 8 C 0.583 3.417 9 O -0.547 6.547 10 N -0.607 5.607 11 C 0.089 3.911 12 C -0.116 4.116 13 H 0.085 0.915 14 C 0.162 3.838 15 N -0.592 5.592 16 C -0.225 4.225 17 H 0.076 0.924 18 C -0.005 4.005 19 N -0.915 5.915 20 Si 0.911 3.089 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.136 3.864 25 C -0.086 4.086 26 C -0.120 4.120 27 C 0.117 3.883 28 C 0.159 3.841 29 N -0.541 5.541 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.026 0.974 40 H 0.091 0.909 41 H 0.254 0.746 42 H 0.050 0.950 43 H 0.028 0.972 44 H 0.051 0.949 45 H 0.046 0.954 46 H 0.064 0.936 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.128 12.808 -2.043 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.212 6.212 4 C 0.162 3.838 5 C -0.221 4.221 6 C -0.010 4.010 7 C -0.228 4.228 8 C 0.373 3.627 9 O -0.426 6.426 10 N -0.339 5.339 11 C -0.033 4.033 12 C -0.137 4.137 13 H 0.103 0.897 14 C 0.036 3.964 15 N -0.315 5.315 16 C -0.353 4.353 17 H 0.094 0.906 18 C -0.202 4.202 19 N -0.561 5.561 20 Si 0.741 3.259 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.009 3.991 25 C -0.089 4.089 26 C -0.177 4.177 27 C -0.005 4.005 28 C 0.002 3.998 29 N -0.265 5.265 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.165 0.835 36 H 0.170 0.830 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.044 0.956 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.045 0.955 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.095 0.905 48 H 0.090 0.910 49 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -14.508 12.518 -2.153 19.282 hybrid contribution 0.759 -0.233 0.393 0.886 sum -13.749 12.286 -1.760 18.522 Atomic orbital electron populations 1.21827 0.92910 1.03070 1.03238 1.22691 0.94795 0.80668 1.03048 1.86193 1.16810 1.31231 1.86925 1.20120 0.84158 0.90138 0.89403 1.21012 0.95497 0.95837 1.09787 1.21488 0.91503 0.99276 0.88753 1.20757 0.94499 0.95256 1.12266 1.17490 0.85434 0.82732 0.77080 1.90763 1.74824 1.26265 1.50731 1.48483 1.08081 1.11508 1.65843 1.22819 0.98723 0.83123 0.98649 1.23372 0.92190 0.99362 0.98768 0.89679 1.21839 0.85379 0.90459 0.98746 1.45050 1.01490 1.13773 1.71163 1.18970 0.93069 0.87083 1.36153 0.90589 1.24864 0.97407 0.96845 1.01095 1.69869 1.16344 1.21093 1.48808 0.86158 0.79196 0.81004 0.79509 1.21478 1.21683 1.20644 1.21878 0.95667 0.86538 0.95022 1.22372 0.96837 0.94762 0.94920 1.21578 0.99577 0.99564 0.97002 1.22238 0.78844 1.00272 0.99148 1.23877 0.89435 0.97786 0.88695 1.67481 1.06332 1.32610 1.20068 0.90115 0.91660 0.91680 0.91247 0.91187 0.83497 0.82962 0.90183 0.90071 0.95627 0.89107 0.93551 0.93120 0.95457 0.92954 0.93491 0.91679 0.90458 0.91000 0.79611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.15 0.38 -0.59 16 2 C 0.06 0.56 6.02 37.15 0.22 0.78 16 3 O -0.30 -3.31 10.10 -18.18 -0.18 -3.49 16 4 C 0.34 4.03 7.49 -16.96 -0.13 3.90 16 5 C -0.20 -2.08 10.02 -39.34 -0.39 -2.47 16 6 C 0.02 0.18 9.70 -38.91 -0.38 -0.20 16 7 C -0.22 -2.90 5.84 -104.82 -0.61 -3.51 16 8 C 0.58 8.89 7.77 -12.44 -0.10 8.79 16 9 O -0.55 -9.74 16.71 5.29 0.09 -9.65 16 10 N -0.61 -8.95 3.32 -172.86 -0.57 -9.52 16 11 C 0.09 1.25 4.58 -3.28 -0.02 1.24 16 12 C -0.12 -1.94 3.77 -88.05 -0.33 -2.28 16 13 H 0.08 1.43 7.94 -51.93 -0.41 1.01 16 14 C 0.16 3.48 5.51 -2.04 -0.01 3.46 16 15 N -0.59 -13.98 3.37 -168.22 -0.57 -14.54 16 16 C -0.22 -5.91 10.37 -15.06 -0.16 -6.07 16 17 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 18 C 0.00 -0.13 5.39 -17.43 -0.09 -0.23 16 19 N -0.91 -25.44 10.90 55.49 0.60 -24.84 16 20 Si 0.91 21.21 29.57 -169.99 -5.03 16.18 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C 0.14 2.61 6.37 -2.27 -0.01 2.59 16 25 C -0.09 -1.40 1.08 -152.17 -0.16 -1.56 16 26 C -0.12 -1.79 8.61 37.16 0.32 -1.47 16 27 C 0.12 1.77 6.24 -3.28 -0.02 1.75 16 28 C 0.16 1.99 9.34 -17.14 -0.16 1.83 16 29 N -0.54 -6.87 9.18 -12.97 -0.12 -6.98 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 34 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 35 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.15 1.54 7.80 -52.49 -0.41 1.13 16 37 H 0.08 1.00 5.68 -51.92 -0.29 0.70 16 38 H 0.08 1.12 6.54 -51.93 -0.34 0.78 16 39 H 0.03 0.57 7.18 -51.93 -0.37 0.20 16 40 H 0.09 2.22 6.45 -51.93 -0.33 1.88 16 41 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.05 0.95 7.92 -51.93 -0.41 0.54 16 43 H 0.03 0.53 7.17 -51.93 -0.37 0.16 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.08 1.16 7.56 -51.93 -0.39 0.77 16 48 H 0.07 1.07 7.11 -51.92 -0.37 0.71 16 49 H 0.19 2.19 3.88 -52.48 -0.20 1.99 16 LS Contribution 387.34 15.07 5.84 5.84 Total: -1.00 -30.75 387.34 -8.85 -39.59 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -7.26 Total: 1.47 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -1.65 Total: 5.96 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.65 Total: -55.89 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.10 Total: -13.15 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.75 -8.85 -39.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091713243.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.509 kcal (2) G-P(sol) polarization free energy of solvation -30.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds