Wall clock time and date at job start Wed Apr 1 2020 05:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.46892 * 2 1 4 4 C 1.35681 * 117.00038 * 180.02562 * 3 2 1 5 5 C 1.38915 * 119.68579 * 180.02562 * 4 3 2 6 6 C 1.38380 * 119.11344 * 179.97438 * 5 4 3 7 7 C 1.38830 * 118.48077 * 359.73293 * 6 5 4 8 8 C 1.38044 * 119.29053 * 0.52721 * 7 6 5 9 9 C 1.50704 * 119.58343 * 179.72992 * 8 7 6 10 10 C 1.50701 * 109.46977 * 124.72978 * 9 8 7 11 11 O 1.21284 * 120.00024 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99785 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99821 * 180.02562 * 12 10 9 14 14 H 1.08998 * 110.56254 * 33.04005 * 13 12 10 15 15 C 1.54854 * 110.62881 * 155.94377 * 13 12 10 16 16 C 1.55844 * 103.44442 * 118.64439 * 15 13 12 17 17 H 1.09004 * 115.55949 * 159.56838 * 16 15 13 18 18 C 1.55845 * 105.06545 * 288.17713 * 16 15 13 19 19 C 1.54854 * 103.44703 * 71.82476 * 18 16 15 20 20 C 1.55845 * 110.75946 * 270.04848 * 13 12 10 21 21 H 1.08996 * 115.56343 * 81.88277 * 20 13 12 22 22 N 1.50233 * 101.05305 * 32.93920 * 16 15 13 23 23 C 1.36939 * 130.83937 * 126.04362 * 22 16 15 24 24 H 1.07998 * 119.99924 * 180.02562 * 23 22 16 25 25 C 1.38814 * 119.99810 * 0.03549 * 23 22 16 26 26 N 1.31611 * 120.00101 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99686 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47264 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47041 * 119.99670 * 27 25 23 30 30 H 1.48506 * 109.46877 * 239.99932 * 27 25 23 31 31 N 1.31967 * 120.83720 * 359.46113 * 8 7 6 32 32 H 1.08994 * 109.46958 * 299.99873 * 1 2 3 33 33 H 1.08998 * 109.47203 * 59.99762 * 1 2 3 34 34 H 1.08998 * 109.47007 * 179.97438 * 1 2 3 35 35 H 1.09006 * 109.47130 * 240.00473 * 2 1 3 36 36 H 1.08995 * 109.47365 * 119.99734 * 2 1 3 37 37 H 1.08001 * 120.44597 * 0.02562 * 5 4 3 38 38 H 1.07995 * 120.76080 * 180.02562 * 6 5 4 39 39 H 1.07998 * 120.35319 * 180.26137 * 7 6 5 40 40 H 1.09004 * 109.47099 * 4.73457 * 9 8 7 41 41 H 1.08997 * 109.47218 * 244.73664 * 9 8 7 42 42 H 0.96997 * 120.00384 * 359.97438 * 12 10 9 43 43 H 1.08996 * 110.62663 * 237.13860 * 15 13 12 44 44 H 1.09000 * 110.62166 * 359.97438 * 15 13 12 45 45 H 1.09001 * 110.62546 * 190.31573 * 18 16 15 46 46 H 1.08998 * 110.62795 * 313.33774 * 18 16 15 47 47 H 1.08997 * 110.62477 * 118.48848 * 19 18 16 48 48 H 1.08997 * 110.62470 * 241.51343 * 19 18 16 49 49 H 0.97005 * 120.00211 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5252 -0.0005 5 6 3.8753 2.8118 0.0000 6 6 5.2489 2.9794 0.0000 7 6 6.0539 1.8484 0.0051 8 6 5.4646 0.6000 -0.0010 9 6 6.3322 -0.6322 -0.0017 10 6 5.9552 -1.5126 1.1619 11 8 5.0689 -1.1731 1.9170 12 7 6.6029 -2.6772 1.3633 13 6 6.2360 -3.5334 2.4941 14 1 5.1693 -3.4545 2.7037 15 6 6.6297 -5.0047 2.2147 16 6 7.6501 -5.3281 3.3474 17 1 7.7978 -6.3872 3.5591 18 6 8.9363 -4.5315 2.9734 19 6 8.5426 -3.0602 3.2528 20 6 7.0721 -3.1682 3.7576 21 1 6.7084 -2.3164 4.3322 22 7 7.1088 -4.4901 4.4706 23 6 6.7573 -4.8272 5.7505 24 1 6.3804 -4.0715 6.4237 25 6 6.8857 -6.1401 6.1825 26 7 7.3447 -7.0610 5.3618 27 14 6.4068 -6.5998 7.9286 28 1 5.9239 -5.3914 8.6439 29 1 5.3277 -7.6193 7.8937 30 1 7.5889 -7.1541 8.6363 31 7 4.1512 0.4719 -0.0010 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5138 -0.8901 36 1 1.8934 -0.5138 0.8900 37 1 3.2193 3.6697 0.0012 38 1 5.6847 3.9675 0.0008 39 1 7.1296 1.9441 0.0095 40 1 7.3785 -0.3400 0.0880 41 1 6.1863 -1.1789 -0.9333 42 1 7.3115 -2.9490 0.7592 43 1 5.7582 -5.6555 2.2856 44 1 7.0975 -5.0975 1.2346 45 1 9.7717 -4.8322 3.6058 46 1 9.1812 -4.6701 1.9203 47 1 9.1827 -2.6312 4.0237 48 1 8.5923 -2.4692 2.3383 49 1 7.4340 -7.9786 5.6636 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095792094.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:34 Heat of formation + Delta-G solvation = 10.610320 kcal Electronic energy + Delta-G solvation = -30562.108178 eV Core-core repulsion = 26491.032975 eV Total energy + Delta-G solvation = -4071.075203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.83897 -39.87929 -38.54542 -37.81619 -33.85250 -33.19877 -32.36949 -32.26271 -31.15200 -29.37379 -29.04867 -28.39057 -27.05415 -24.30273 -24.00109 -22.89235 -22.27633 -21.30577 -20.42017 -19.49268 -18.56618 -18.32776 -17.28868 -16.77300 -16.62204 -16.25428 -16.12607 -15.40416 -15.05740 -14.85443 -14.46085 -14.25334 -14.04293 -13.98630 -13.80474 -13.33164 -13.16365 -12.69396 -12.59334 -12.35269 -12.26724 -12.08567 -11.94209 -11.71676 -11.59461 -11.47417 -11.02385 -10.91189 -10.87918 -10.83669 -10.79192 -10.21303 -10.05905 -9.96022 -9.84199 -9.69088 -9.52069 -9.32977 -9.22230 -8.92842 -8.53937 -8.43819 -6.90222 -5.72316 -3.09933 1.00068 1.21175 2.93570 2.96943 3.37769 3.40791 3.46107 3.48125 3.78865 3.98563 4.46076 4.55376 4.85259 4.91981 4.92969 4.95237 5.03106 5.10012 5.21614 5.23953 5.25339 5.32239 5.39675 5.53883 5.61099 5.63384 5.74653 5.78337 5.82667 5.86369 5.92500 5.98027 6.03728 6.08684 6.13265 6.30912 6.32633 6.35253 6.55132 6.60813 6.72313 6.83321 6.97774 7.01955 7.19509 7.29253 7.54193 7.76285 7.83863 7.90495 8.16391 8.59395 9.11358 9.73698 10.54269 11.37582 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013915 B = 0.002618 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.735886 B =10694.174096 C =11681.852742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 O -0.310 6.310 4 C 0.327 3.673 5 C -0.198 4.198 6 C -0.042 4.042 7 C -0.207 4.207 8 C 0.189 3.811 9 C -0.096 4.096 10 C 0.514 3.486 11 O -0.525 6.525 12 N -0.715 5.715 13 C 0.129 3.871 14 H 0.082 0.918 15 C -0.141 4.141 16 C 0.156 3.844 17 H 0.152 0.848 18 C -0.137 4.137 19 C -0.130 4.130 20 C 0.128 3.872 21 H 0.083 0.917 22 N -0.589 5.589 23 C -0.209 4.209 24 H 0.079 0.921 25 C -0.013 4.013 26 N -0.923 5.923 27 Si 0.916 3.084 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 N -0.510 5.510 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.394 0.606 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.045 0.955 47 H 0.050 0.950 48 H 0.051 0.949 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.517 15.677 -16.767 23.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.218 6.218 4 C 0.148 3.852 5 C -0.218 4.218 6 C -0.068 4.068 7 C -0.228 4.228 8 C 0.051 3.949 9 C -0.137 4.137 10 C 0.298 3.702 11 O -0.401 6.401 12 N -0.366 5.366 13 C 0.024 3.976 14 H 0.100 0.900 15 C -0.181 4.181 16 C 0.049 3.951 17 H 0.169 0.831 18 C -0.177 4.177 19 C -0.170 4.170 20 C 0.019 3.981 21 H 0.101 0.899 22 N -0.310 5.310 23 C -0.337 4.337 24 H 0.097 0.903 25 C -0.208 4.208 26 N -0.572 5.572 27 Si 0.746 3.254 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.218 1.218 31 N -0.233 5.233 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.156 0.844 38 H 0.158 0.842 39 H 0.154 0.846 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.228 0.772 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.844 15.054 -15.920 22.245 hybrid contribution 0.557 0.273 0.570 0.843 sum -3.287 15.327 -15.350 21.940 Atomic orbital electron populations 1.21814 0.93195 1.02915 1.02987 1.22611 0.94458 0.80838 1.02994 1.86195 1.16893 1.30969 1.87710 1.19742 0.84088 0.89725 0.91687 1.21031 0.95918 0.95714 1.09161 1.21316 0.92303 0.99247 0.93901 1.21744 1.01300 0.92526 1.07207 1.20190 0.88684 0.93490 0.92538 1.20687 0.99593 0.93616 0.99760 1.20107 0.82313 0.81842 0.85917 1.90734 1.30265 1.72278 1.46781 1.46202 1.38524 1.21143 1.30767 1.22592 0.99836 0.89656 0.85558 0.90014 1.23297 1.01502 0.94155 0.99149 1.23689 0.88217 0.99414 0.83732 0.83085 1.23057 1.00514 0.95870 0.98235 1.22910 0.98223 0.96786 0.99060 1.23173 0.93399 0.90357 0.91147 0.89872 1.46457 1.73347 1.02322 1.08870 1.19111 1.35118 0.93494 0.85967 0.90304 1.24691 1.02098 0.95594 0.98392 1.69472 1.52170 1.01481 1.34057 0.85968 0.77624 0.78083 0.83677 1.20552 1.21778 1.21821 1.67057 1.05803 1.33011 1.17418 0.91691 0.91937 0.90282 0.91840 0.90935 0.84393 0.84200 0.84567 0.87222 0.87194 0.77180 0.91758 0.92751 0.92695 0.93635 0.93142 0.93071 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 37.16 0.38 -1.00 16 2 C 0.07 0.80 6.03 37.16 0.22 1.03 16 3 O -0.31 -4.16 10.12 -18.75 -0.19 -4.35 16 4 C 0.33 4.49 7.49 -17.12 -0.13 4.36 16 5 C -0.20 -2.16 10.04 -39.28 -0.39 -2.55 16 6 C -0.04 -0.39 10.17 -39.31 -0.40 -0.79 16 7 C -0.21 -2.05 9.70 -39.43 -0.38 -2.44 16 8 C 0.19 2.34 5.76 -82.60 -0.48 1.86 16 9 C -0.10 -0.99 6.10 -29.03 -0.18 -1.17 16 10 C 0.51 7.67 7.76 -10.99 -0.09 7.59 16 11 O -0.53 -10.34 14.99 5.55 0.08 -10.26 16 12 N -0.71 -10.21 3.72 -51.39 -0.19 -10.40 16 13 C 0.13 2.42 3.13 -65.43 -0.21 2.21 16 14 H 0.08 1.76 7.58 -51.93 -0.39 1.37 16 15 C -0.14 -2.66 6.20 -24.24 -0.15 -2.81 16 16 C 0.16 3.49 4.69 -62.80 -0.29 3.19 16 17 H 0.15 3.87 5.57 -51.93 -0.29 3.58 16 18 C -0.14 -2.60 6.44 -24.23 -0.16 -2.75 16 19 C -0.13 -2.35 6.32 -24.23 -0.15 -2.50 16 20 C 0.13 2.69 5.35 -62.80 -0.34 2.36 16 21 H 0.08 1.84 8.14 -51.93 -0.42 1.41 16 22 N -0.59 -14.71 2.99 -145.82 -0.44 -15.15 16 23 C -0.21 -5.80 10.59 -15.06 -0.16 -5.96 16 24 H 0.08 2.17 7.83 -52.49 -0.41 1.75 16 25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 26 N -0.92 -26.20 10.48 55.49 0.58 -25.62 16 27 Si 0.92 22.15 29.55 -169.99 -5.02 17.12 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 30 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 31 N -0.51 -7.44 8.08 -9.55 -0.08 -7.52 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 37 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 38 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.14 0.95 7.94 -52.49 -0.42 0.54 16 40 H 0.11 0.78 7.86 -51.93 -0.41 0.38 16 41 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.39 4.43 7.93 -40.82 -0.32 4.10 16 43 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.05 0.85 7.39 -51.93 -0.38 0.47 16 45 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.04 0.72 7.82 -51.93 -0.41 0.31 16 47 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 48 H 0.05 0.76 6.40 -51.93 -0.33 0.43 16 49 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 394.90 15.07 5.95 5.95 Total: -1.00 -33.66 394.90 -9.86 -43.52 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -7.57 Total: 6.52 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -2.99 Total: 0.19 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.12 Total: -58.68 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.11 Total: -14.61 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.66 -9.86 -43.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095792094.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.126 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds