Wall clock time and date at job start Wed Apr 1 2020 05:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.46892 * 2 1 4 4 C 1.35681 * 117.00038 * 180.02562 * 3 2 1 5 5 C 1.38915 * 119.68579 * 180.02562 * 4 3 2 6 6 C 1.38380 * 119.11344 * 179.97438 * 5 4 3 7 7 C 1.38830 * 118.48077 * 359.73293 * 6 5 4 8 8 C 1.38044 * 119.29053 * 0.52721 * 7 6 5 9 9 C 1.50704 * 119.58343 * 179.72992 * 8 7 6 10 10 C 1.50701 * 109.46977 * 124.72978 * 9 8 7 11 11 O 1.21284 * 120.00024 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99785 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99821 * 180.02562 * 12 10 9 14 14 H 1.08998 * 110.56254 * 33.04005 * 13 12 10 15 15 C 1.54854 * 110.62881 * 155.94377 * 13 12 10 16 16 C 1.55844 * 103.44442 * 118.64439 * 15 13 12 17 17 H 1.09004 * 115.55949 * 159.56838 * 16 15 13 18 18 C 1.55845 * 105.06545 * 288.17713 * 16 15 13 19 19 C 1.54854 * 103.44703 * 71.82476 * 18 16 15 20 20 C 1.55845 * 110.75946 * 270.04848 * 13 12 10 21 21 H 1.08996 * 115.56343 * 81.88277 * 20 13 12 22 22 N 1.50233 * 101.05305 * 32.93920 * 16 15 13 23 23 C 1.36939 * 130.83937 * 126.04362 * 22 16 15 24 24 H 1.07998 * 119.99924 * 180.02562 * 23 22 16 25 25 C 1.38814 * 119.99810 * 0.03549 * 23 22 16 26 26 N 1.31611 * 120.00101 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99686 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47264 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47041 * 119.99670 * 27 25 23 30 30 H 1.48506 * 109.46877 * 239.99932 * 27 25 23 31 31 N 1.31967 * 120.83720 * 359.46113 * 8 7 6 32 32 H 1.08994 * 109.46958 * 299.99873 * 1 2 3 33 33 H 1.08998 * 109.47203 * 59.99762 * 1 2 3 34 34 H 1.08998 * 109.47007 * 179.97438 * 1 2 3 35 35 H 1.09006 * 109.47130 * 240.00473 * 2 1 3 36 36 H 1.08995 * 109.47365 * 119.99734 * 2 1 3 37 37 H 1.08001 * 120.44597 * 0.02562 * 5 4 3 38 38 H 1.07995 * 120.76080 * 180.02562 * 6 5 4 39 39 H 1.07998 * 120.35319 * 180.26137 * 7 6 5 40 40 H 1.09004 * 109.47099 * 4.73457 * 9 8 7 41 41 H 1.08997 * 109.47218 * 244.73664 * 9 8 7 42 42 H 0.96997 * 120.00384 * 359.97438 * 12 10 9 43 43 H 1.08996 * 110.62663 * 237.13860 * 15 13 12 44 44 H 1.09000 * 110.62166 * 359.97438 * 15 13 12 45 45 H 1.09001 * 110.62546 * 190.31573 * 18 16 15 46 46 H 1.08998 * 110.62795 * 313.33774 * 18 16 15 47 47 H 1.08997 * 110.62477 * 118.48848 * 19 18 16 48 48 H 1.08997 * 110.62470 * 241.51343 * 19 18 16 49 49 H 0.97005 * 120.00211 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5252 -0.0005 5 6 3.8753 2.8118 0.0000 6 6 5.2489 2.9794 0.0000 7 6 6.0539 1.8484 0.0051 8 6 5.4646 0.6000 -0.0010 9 6 6.3322 -0.6322 -0.0017 10 6 5.9552 -1.5126 1.1619 11 8 5.0689 -1.1731 1.9170 12 7 6.6029 -2.6772 1.3633 13 6 6.2360 -3.5334 2.4941 14 1 5.1693 -3.4545 2.7037 15 6 6.6297 -5.0047 2.2147 16 6 7.6501 -5.3281 3.3474 17 1 7.7978 -6.3872 3.5591 18 6 8.9363 -4.5315 2.9734 19 6 8.5426 -3.0602 3.2528 20 6 7.0721 -3.1682 3.7576 21 1 6.7084 -2.3164 4.3322 22 7 7.1088 -4.4901 4.4706 23 6 6.7573 -4.8272 5.7505 24 1 6.3804 -4.0715 6.4237 25 6 6.8857 -6.1401 6.1825 26 7 7.3447 -7.0610 5.3618 27 14 6.4068 -6.5998 7.9286 28 1 5.9239 -5.3914 8.6439 29 1 5.3277 -7.6193 7.8937 30 1 7.5889 -7.1541 8.6363 31 7 4.1512 0.4719 -0.0010 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5138 -0.8901 36 1 1.8934 -0.5138 0.8900 37 1 3.2193 3.6697 0.0012 38 1 5.6847 3.9675 0.0008 39 1 7.1296 1.9441 0.0095 40 1 7.3785 -0.3400 0.0880 41 1 6.1863 -1.1789 -0.9333 42 1 7.3115 -2.9490 0.7592 43 1 5.7582 -5.6555 2.2856 44 1 7.0975 -5.0975 1.2346 45 1 9.7717 -4.8322 3.6058 46 1 9.1812 -4.6701 1.9203 47 1 9.1827 -2.6312 4.0237 48 1 8.5923 -2.4692 2.3383 49 1 7.4340 -7.9786 5.6636 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095792094.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:33 Heat of formation + Delta-G solvation = -12.039902 kcal Electronic energy + Delta-G solvation = -30563.090365 eV Core-core repulsion = 26491.032975 eV Total energy + Delta-G solvation = -4072.057391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.76509 -41.26681 -39.80655 -38.85903 -35.39537 -34.23995 -33.98650 -33.13185 -32.06224 -31.00190 -30.73518 -29.64590 -28.34915 -26.12057 -24.93670 -23.82977 -23.22273 -22.71176 -21.78340 -21.11018 -20.12005 -19.26881 -18.96012 -18.09681 -17.56899 -17.24808 -16.84962 -16.83921 -16.68917 -16.33614 -15.96657 -15.55854 -15.17402 -15.03323 -14.88503 -14.43992 -14.11379 -13.99105 -13.79274 -13.50105 -13.43241 -13.34860 -13.18826 -12.93054 -12.87975 -12.81899 -12.72273 -12.57587 -12.46490 -12.34764 -11.99316 -11.88851 -11.71627 -11.54874 -11.16992 -11.04409 -10.82781 -10.75788 -10.72092 -10.44373 -9.92012 -9.37087 -8.85352 -7.81149 -5.19888 0.17976 0.43200 1.44122 1.44859 1.54524 1.81447 2.09881 2.24948 2.49518 2.89362 3.16435 3.32636 3.52685 3.83514 3.91785 4.01658 4.05033 4.07279 4.14026 4.17538 4.17949 4.24154 4.38820 4.41491 4.45427 4.49798 4.55247 4.59776 4.63491 4.73479 4.82144 4.84046 4.84682 4.89401 4.99776 5.05227 5.09551 5.16494 5.16770 5.27848 5.28704 5.34975 5.48591 5.57910 5.59495 5.80018 5.90427 6.26409 6.29186 6.75473 7.00193 7.05226 7.47253 7.68155 8.54569 9.25984 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013915 B = 0.002618 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.735886 B =10694.174096 C =11681.852742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.070 3.930 3 O -0.322 6.322 4 C 0.289 3.711 5 C -0.203 4.203 6 C -0.039 4.039 7 C -0.199 4.199 8 C 0.156 3.844 9 C -0.084 4.084 10 C 0.511 3.489 11 O -0.580 6.580 12 N -0.699 5.699 13 C 0.150 3.850 14 H 0.042 0.958 15 C -0.126 4.126 16 C 0.139 3.861 17 H 0.117 0.883 18 C -0.125 4.125 19 C -0.114 4.114 20 C 0.118 3.882 21 H 0.060 0.940 22 N -0.619 5.619 23 C -0.225 4.225 24 H 0.068 0.932 25 C -0.063 4.063 26 N -0.943 5.943 27 Si 0.974 3.026 28 H -0.276 1.276 29 H -0.292 1.292 30 H -0.289 1.289 31 N -0.543 5.543 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.039 0.961 37 H 0.154 0.846 38 H 0.180 0.820 39 H 0.174 0.826 40 H 0.155 0.845 41 H 0.135 0.865 42 H 0.416 0.584 43 H 0.039 0.961 44 H 0.099 0.901 45 H 0.034 0.966 46 H 0.091 0.909 47 H 0.041 0.959 48 H 0.094 0.906 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.468 17.678 -19.286 26.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.005 4.005 3 O -0.230 6.230 4 C 0.110 3.890 5 C -0.223 4.223 6 C -0.064 4.064 7 C -0.219 4.219 8 C 0.019 3.981 9 C -0.124 4.124 10 C 0.298 3.702 11 O -0.458 6.458 12 N -0.353 5.353 13 C 0.042 3.958 14 H 0.061 0.939 15 C -0.166 4.166 16 C 0.034 3.966 17 H 0.135 0.865 18 C -0.164 4.164 19 C -0.153 4.153 20 C 0.010 3.990 21 H 0.078 0.922 22 N -0.341 5.341 23 C -0.354 4.354 24 H 0.086 0.914 25 C -0.255 4.255 26 N -0.592 5.592 27 Si 0.803 3.197 28 H -0.201 1.201 29 H -0.219 1.219 30 H -0.216 1.216 31 N -0.267 5.267 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.172 0.828 38 H 0.197 0.803 39 H 0.191 0.809 40 H 0.173 0.827 41 H 0.152 0.848 42 H 0.254 0.746 43 H 0.058 0.942 44 H 0.117 0.883 45 H 0.053 0.947 46 H 0.110 0.890 47 H 0.060 0.940 48 H 0.113 0.887 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.753 17.077 -18.499 25.237 hybrid contribution -0.085 -0.272 1.344 1.374 sum -1.839 16.804 -17.155 24.085 Atomic orbital electron populations 1.21806 0.90838 1.03982 1.03524 1.22566 0.96258 0.80555 1.01153 1.86172 1.17537 1.31150 1.88171 1.20203 0.84092 0.90914 0.93751 1.21390 0.97366 0.95074 1.08501 1.21838 0.91387 1.01036 0.92135 1.22201 1.03231 0.91556 1.04894 1.20723 0.88296 0.95426 0.93623 1.20782 1.01438 0.92100 0.98038 1.21008 0.81048 0.81762 0.86408 1.90733 1.32608 1.73433 1.49065 1.45916 1.39133 1.20552 1.29659 1.21956 0.97164 0.90313 0.86345 0.93945 1.23126 0.99898 0.93426 1.00122 1.23621 0.90942 0.98043 0.84044 0.86528 1.22947 0.97681 0.95266 1.00513 1.22810 0.95073 0.96885 1.00528 1.23306 0.96029 0.88251 0.91459 0.92171 1.46730 1.74040 1.04603 1.08776 1.19312 1.34891 0.93598 0.87592 0.91424 1.25391 1.02813 0.95607 1.01737 1.69696 1.53063 1.01307 1.35163 0.85066 0.77079 0.77596 0.79940 1.20055 1.21900 1.21602 1.66993 1.07285 1.34039 1.18333 0.91832 0.90607 0.88950 0.92150 0.94258 0.82825 0.80299 0.80878 0.82735 0.84751 0.74553 0.94189 0.88253 0.94702 0.89043 0.94040 0.88746 0.94137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 10.28 71.98 0.74 -1.93 16 2 C 0.07 1.82 6.03 71.98 0.43 2.25 16 3 O -0.32 -9.04 10.12 -89.99 -0.91 -9.95 16 4 C 0.29 8.04 7.49 84.79 0.63 8.67 16 5 C -0.20 -4.16 10.04 22.47 0.23 -3.94 16 6 C -0.04 -0.58 10.17 22.45 0.23 -0.35 16 7 C -0.20 -3.17 9.70 22.37 0.22 -2.95 16 8 C 0.16 3.52 5.76 42.49 0.24 3.77 16 9 C -0.08 -1.41 6.10 29.10 0.18 -1.23 16 10 C 0.51 14.28 7.76 87.66 0.68 14.96 16 11 O -0.58 -23.23 14.99 -3.04 -0.05 -23.28 16 12 N -0.70 -18.00 3.72 -434.90 -1.62 -19.62 16 13 C 0.15 5.55 3.13 46.61 0.15 5.69 16 14 H 0.04 1.92 7.58 -2.39 -0.02 1.90 16 15 C -0.13 -4.64 6.20 32.21 0.20 -4.44 16 16 C 0.14 6.23 4.69 46.23 0.22 6.45 16 17 H 0.12 6.13 5.57 -2.39 -0.01 6.12 16 18 C -0.12 -4.42 6.44 32.21 0.21 -4.22 16 19 C -0.11 -3.82 6.32 32.21 0.20 -3.62 16 20 C 0.12 4.97 5.35 46.23 0.25 5.21 16 21 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 22 N -0.62 -31.84 2.99 -615.24 -1.84 -33.67 16 23 C -0.22 -12.99 10.59 84.03 0.89 -12.10 16 24 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 25 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 26 N -0.94 -55.25 10.48 21.65 0.23 -55.02 16 27 Si 0.97 46.90 29.55 68.60 2.03 48.93 16 28 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 29 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 30 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 31 N -0.54 -15.85 8.08 -296.98 -2.40 -18.25 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.54 8.10 -2.38 -0.02 1.52 16 36 H 0.04 1.25 8.10 -2.39 -0.02 1.23 16 37 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 38 H 0.18 1.20 8.06 -2.91 -0.02 1.17 16 39 H 0.17 1.38 7.94 -2.91 -0.02 1.36 16 40 H 0.15 1.21 7.86 -2.38 -0.02 1.19 16 41 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.42 7.13 7.93 -92.71 -0.73 6.40 16 43 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.10 2.73 7.39 -2.39 -0.02 2.71 16 45 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.09 2.41 7.82 -2.39 -0.02 2.39 16 47 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.09 2.35 6.40 -2.39 -0.02 2.33 16 49 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 Total: -1.00 -81.54 394.90 1.83 -79.71 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.23 Total: 22.06 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 6.16 Total: 9.09 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -5.62 Total: -126.56 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.96 Total: -33.23 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -81.54 1.83 -79.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095792094.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.668 kcal (2) G-P(sol) polarization free energy of solvation -81.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds