Wall clock time and date at job start Wed Apr 1 2020 05:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42901 * 109.47092 * 2 1 4 4 C 1.35422 * 116.99880 * 179.97438 * 3 2 1 5 5 N 1.32239 * 119.80033 * 359.97438 * 4 3 2 6 6 C 1.31885 * 121.80042 * 179.97438 * 5 4 3 7 7 C 1.38355 * 121.18483 * 0.02562 * 6 5 4 8 8 C 1.38345 * 119.45806 * 359.69895 * 7 6 5 9 9 C 1.50702 * 120.82683 * 180.27489 * 8 7 6 10 10 C 1.39986 * 118.34651 * 0.56785 * 8 7 6 11 11 C 1.47521 * 120.59506 * 179.71033 * 10 8 7 12 12 O 1.21592 * 120.00148 * 269.72157 * 11 10 8 13 13 N 1.34779 * 120.00186 * 89.72202 * 11 10 8 14 14 C 1.46498 * 120.00339 * 180.27728 * 13 11 10 15 15 H 1.08999 * 110.56137 * 36.79539 * 14 13 11 16 16 C 1.54855 * 110.63050 * 159.87252 * 14 13 11 17 17 C 1.55841 * 103.44518 * 118.48655 * 16 14 13 18 18 H 1.08998 * 115.56002 * 158.81615 * 17 16 14 19 19 C 1.55846 * 105.74358 * 287.99058 * 17 16 14 20 20 C 1.57710 * 103.12177 * 70.90949 * 19 17 16 21 21 C 1.55842 * 110.62660 * 273.89795 * 14 13 11 22 22 H 1.09007 * 115.55926 * 82.69210 * 21 14 13 23 23 N 1.50238 * 101.05410 * 208.56942 * 21 14 13 24 24 C 1.36928 * 130.83897 * 233.98802 * 23 21 14 25 25 H 1.07996 * 120.00577 * 359.97438 * 24 23 21 26 26 C 1.38814 * 119.99862 * 179.97438 * 24 23 21 27 27 N 1.31626 * 119.99896 * 0.02562 * 26 24 23 28 28 Si 1.86806 * 120.00101 * 179.97438 * 26 24 23 29 29 H 1.48493 * 109.47039 * 0.02562 * 28 26 24 30 30 H 1.48499 * 109.46844 * 120.00358 * 28 26 24 31 31 H 1.48503 * 109.47071 * 240.00223 * 28 26 24 32 32 H 1.09007 * 109.46855 * 299.99860 * 1 2 3 33 33 H 1.08993 * 109.47248 * 59.99848 * 1 2 3 34 34 H 1.08994 * 109.47310 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.46877 * 239.99796 * 2 1 3 36 36 H 1.09001 * 109.46978 * 119.99960 * 2 1 3 37 37 H 1.07992 * 119.40785 * 179.97438 * 6 5 4 38 38 H 1.08002 * 120.27356 * 179.97438 * 7 6 5 39 39 H 1.09001 * 109.46787 * 270.29658 * 9 8 7 40 40 H 1.09007 * 109.46729 * 30.29459 * 9 8 7 41 41 H 1.08993 * 109.46895 * 150.29603 * 9 8 7 42 42 H 0.97001 * 120.00103 * 359.97438 * 13 11 10 43 43 H 1.08995 * 110.62671 * 236.97994 * 16 14 13 44 44 H 1.09001 * 110.62549 * 359.97438 * 16 14 13 45 45 H 1.08998 * 110.62918 * 190.49824 * 19 17 16 46 46 H 1.08997 * 110.62445 * 313.36140 * 19 17 16 47 47 H 1.08995 * 111.91440 * 242.53377 * 20 19 17 48 48 H 1.09005 * 110.06397 * 119.01648 * 20 19 17 49 49 H 0.97003 * 119.99657 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3489 1.5247 0.0005 5 7 4.1508 0.4732 0.0015 6 6 5.4635 0.6002 0.0016 7 6 6.0626 1.8473 0.0011 8 6 5.2714 2.9822 -0.0057 9 6 5.8913 4.3558 -0.0127 10 6 3.8806 2.8228 0.0002 11 6 2.9901 3.9990 -0.0003 12 8 2.6231 4.4841 1.0525 13 7 2.5833 4.5358 -1.1677 14 6 1.7038 5.7074 -1.1682 15 1 1.9645 6.3821 -0.3527 16 6 1.7725 6.4406 -2.5305 17 6 0.3115 6.3493 -3.0651 18 1 0.0398 7.0878 -3.8194 19 6 0.1040 4.8605 -3.4764 20 6 0.0558 4.1096 -2.0904 21 6 0.2107 5.2732 -1.0653 22 1 -0.1499 5.0637 -0.0582 23 7 -0.4686 6.4052 -1.7823 24 6 -1.4854 7.2333 -1.3880 25 1 -1.9280 7.1169 -0.4098 26 6 -1.9472 8.2223 -2.2455 27 7 -1.4081 8.3638 -3.4380 28 14 -3.3348 9.3515 -1.7078 29 1 -3.7646 8.9879 -0.3337 30 1 -2.8612 10.7589 -1.7218 31 1 -4.4813 9.2057 -2.6404 32 1 -0.3633 0.5139 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3633 -1.0276 0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 6.0819 -0.2851 0.0029 38 1 7.1391 1.9343 0.0016 39 1 6.0446 4.6903 1.0133 40 1 6.8500 4.3191 -0.5301 41 1 5.2276 5.0513 -0.5262 42 1 2.8763 4.1490 -2.0076 43 1 2.0666 7.4810 -2.3922 44 1 2.4613 5.9327 -3.2056 45 1 -0.8261 4.7417 -4.0321 46 1 0.9494 4.5032 -4.0643 47 1 0.8721 3.3949 -1.9864 48 1 -0.9074 3.6145 -1.9667 49 1 -1.7307 9.0552 -4.0371 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095811359.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:39 Heat of formation + Delta-G solvation = -12.430366 kcal Electronic energy + Delta-G solvation = -31722.461667 eV Core-core repulsion = 27650.387345 eV Total energy + Delta-G solvation = -4072.074323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.10113 -41.14012 -39.65057 -39.08426 -35.49665 -34.91036 -34.14899 -33.10355 -31.28459 -30.93209 -30.59027 -29.33565 -28.85784 -26.26228 -25.22692 -24.54548 -23.05648 -22.68289 -21.94403 -21.21298 -20.22030 -19.17633 -19.05933 -18.49255 -18.13539 -17.44263 -17.03630 -16.81995 -16.35951 -16.07105 -15.80094 -15.45380 -15.14737 -15.05052 -14.83545 -14.18258 -14.15627 -14.09334 -13.87593 -13.60702 -13.48746 -13.41710 -13.23342 -13.17996 -12.89709 -12.85976 -12.80793 -12.64073 -12.48995 -12.36713 -11.99561 -11.91421 -11.74270 -11.55679 -11.39850 -11.15180 -11.05610 -10.83764 -10.63348 -10.53043 -10.04721 -9.55066 -8.87061 -7.80223 -5.19594 -0.10979 0.20807 1.45226 1.46238 1.49787 1.56285 1.94807 2.12782 2.49461 2.65051 3.26590 3.33245 3.49792 3.70040 3.72354 3.88317 3.93652 4.05692 4.06433 4.13956 4.14563 4.15319 4.30787 4.40701 4.44059 4.49034 4.59429 4.60350 4.68047 4.68727 4.78096 4.79694 4.83730 4.90496 4.93692 5.02911 5.07739 5.12444 5.17132 5.18758 5.25820 5.30064 5.42281 5.48448 5.52373 5.70637 5.86694 6.20044 6.25816 6.51884 6.75812 7.04959 7.19595 7.67801 8.54360 9.26836 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015413 B = 0.003258 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.161794 B = 8593.105053 C = 9509.821614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.067 3.933 3 O -0.322 6.322 4 C 0.342 3.658 5 N -0.555 5.555 6 C 0.158 3.842 7 C -0.201 4.201 8 C 0.023 3.977 9 C -0.123 4.123 10 C -0.228 4.228 11 C 0.581 3.419 12 O -0.580 6.580 13 N -0.686 5.686 14 C 0.146 3.854 15 H 0.055 0.945 16 C -0.123 4.123 17 C 0.140 3.860 18 H 0.124 0.876 19 C -0.123 4.123 20 C -0.113 4.113 21 C 0.121 3.879 22 H 0.058 0.942 23 N -0.617 5.617 24 C -0.225 4.225 25 H 0.069 0.931 26 C -0.061 4.061 27 N -0.942 5.942 28 Si 0.976 3.024 29 H -0.276 1.276 30 H -0.290 1.290 31 H -0.290 1.290 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.204 0.796 38 H 0.184 0.816 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.057 0.943 42 H 0.410 0.590 43 H 0.052 0.948 44 H 0.095 0.905 45 H 0.038 0.962 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.038 0.962 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.635 -18.528 1.699 26.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.007 4.007 3 O -0.229 6.229 4 C 0.163 3.837 5 N -0.279 5.279 6 C 0.002 3.998 7 C -0.221 4.221 8 C 0.015 3.985 9 C -0.180 4.180 10 C -0.234 4.234 11 C 0.367 3.633 12 O -0.460 6.460 13 N -0.337 5.337 14 C 0.039 3.961 15 H 0.074 0.926 16 C -0.163 4.163 17 C 0.034 3.966 18 H 0.141 0.859 19 C -0.162 4.162 20 C -0.153 4.153 21 C 0.013 3.987 22 H 0.076 0.924 23 N -0.338 5.338 24 C -0.353 4.353 25 H 0.087 0.913 26 C -0.254 4.254 27 N -0.592 5.592 28 Si 0.805 3.195 29 H -0.201 1.201 30 H -0.217 1.217 31 H -0.217 1.217 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.221 0.779 38 H 0.201 0.799 39 H 0.102 0.898 40 H 0.133 0.867 41 H 0.076 0.924 42 H 0.247 0.753 43 H 0.071 0.929 44 H 0.114 0.886 45 H 0.057 0.943 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.057 0.943 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 17.506 -18.567 2.407 25.632 hybrid contribution -0.904 1.348 0.211 1.637 sum 16.603 -17.219 2.618 24.062 Atomic orbital electron populations 1.21856 0.92153 1.04207 1.02699 1.22800 0.95512 0.79583 1.02837 1.86272 1.17057 1.32748 1.86864 1.19792 0.84494 0.88763 0.90642 1.67491 1.07909 1.31466 1.21067 1.23342 0.88375 0.99296 0.88802 1.22221 1.03080 0.91075 1.05696 1.20496 0.89370 0.98728 0.89947 1.20999 1.02426 0.90629 1.03913 1.19757 0.95120 0.91300 1.17202 1.18111 0.79142 0.82449 0.83613 1.90775 1.58661 1.63515 1.33056 1.45989 1.48574 1.30863 1.08265 1.22152 0.89608 0.86018 0.98292 0.92648 1.23100 0.99285 0.99116 0.94750 1.23677 0.87656 0.95563 0.89727 0.85924 1.23384 1.00309 0.96871 0.95629 1.23243 1.00108 0.96437 0.95469 1.23214 0.91545 0.89456 0.94474 0.92366 1.46718 1.38114 1.34586 1.14430 1.19313 1.08407 1.08423 0.99205 0.91345 1.25390 1.02515 1.00846 0.96616 1.69665 1.45083 1.35949 1.08509 0.85043 0.78757 0.78412 0.77317 1.20072 1.21725 1.21714 0.92867 0.92280 0.87515 0.90560 0.91362 0.77949 0.79910 0.89823 0.86670 0.92379 0.75278 0.92890 0.88631 0.94281 0.89943 0.90129 0.94293 0.94066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 10.28 71.98 0.74 -2.26 16 2 C 0.07 1.47 6.03 71.98 0.43 1.90 16 3 O -0.32 -9.49 9.57 -87.17 -0.83 -10.32 16 4 C 0.34 9.26 7.51 85.13 0.64 9.90 16 5 N -0.55 -11.97 9.21 -308.01 -2.84 -14.80 16 6 C 0.16 2.16 11.17 84.71 0.95 3.10 16 7 C -0.20 -2.50 9.79 22.32 0.22 -2.29 16 8 C 0.02 0.44 5.95 -19.41 -0.12 0.32 16 9 C -0.12 -1.99 9.69 71.24 0.69 -1.30 16 10 C -0.23 -6.21 5.66 -19.91 -0.11 -6.32 16 11 C 0.58 19.74 5.42 86.69 0.47 20.20 16 12 O -0.58 -25.33 16.83 -4.01 -0.07 -25.39 16 13 N -0.69 -21.32 3.59 -438.08 -1.57 -22.90 16 14 C 0.15 5.68 3.08 46.61 0.14 5.83 16 15 H 0.06 2.47 7.70 -2.39 -0.02 2.45 16 16 C -0.12 -4.61 6.22 32.21 0.20 -4.41 16 17 C 0.14 6.39 4.67 46.23 0.22 6.61 16 18 H 0.12 6.49 5.52 -2.39 -0.01 6.48 16 19 C -0.12 -4.72 6.58 33.25 0.22 -4.50 16 20 C -0.11 -4.33 6.48 33.25 0.22 -4.11 16 21 C 0.12 5.45 5.30 46.23 0.25 5.69 16 22 H 0.06 2.86 8.14 -2.38 -0.02 2.84 16 23 N -0.62 -32.26 2.99 -615.25 -1.84 -34.09 16 24 C -0.22 -13.03 10.59 84.04 0.89 -12.14 16 25 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 26 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 27 N -0.94 -55.04 10.47 21.65 0.23 -54.81 16 28 Si 0.98 46.81 29.55 68.60 2.03 48.84 16 29 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 30 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 31 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 32 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.08 1.48 8.11 -2.39 -0.02 1.46 16 36 H 0.07 1.41 8.10 -2.39 -0.02 1.39 16 37 H 0.20 1.01 8.06 -2.91 -0.02 0.98 16 38 H 0.18 0.77 8.06 -2.91 -0.02 0.74 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.11 1.01 8.10 -2.38 -0.02 0.99 16 41 H 0.06 1.17 7.19 -2.39 -0.02 1.15 16 42 H 0.41 10.32 8.01 -92.71 -0.74 9.57 16 43 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.10 2.77 7.38 -2.39 -0.02 2.75 16 45 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.08 2.51 7.86 -2.39 -0.02 2.49 16 47 H 0.08 2.69 6.47 -2.39 -0.02 2.67 16 48 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 49 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -76.68 395.26 1.83 -74.85 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.22 Total: 25.42 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 6.50 Total: 13.21 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -6.02 Total: -126.60 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -0.90 Total: -35.71 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -76.68 1.83 -74.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095811359.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.415 kcal (2) G-P(sol) polarization free energy of solvation -76.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds