Wall clock time and date at job start Wed Apr 1 2020 05:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42905 * 109.47140 * 2 1 4 4 C 1.35426 * 117.00069 * 180.02562 * 3 2 1 5 5 N 1.32228 * 119.80059 * 359.97431 * 4 3 2 6 6 C 1.31883 * 121.80336 * 180.02562 * 5 4 3 7 7 C 1.50700 * 119.40821 * 179.97438 * 6 5 4 8 8 C 1.38352 * 121.18405 * 0.02562 * 6 5 4 9 9 C 1.38344 * 119.45833 * 359.74128 * 8 6 5 10 10 C 1.39997 * 118.34621 * 0.49404 * 9 8 6 11 11 C 1.47524 * 120.59490 * 179.77961 * 10 9 8 12 12 O 1.21586 * 119.99538 * 179.72097 * 11 10 9 13 13 N 1.34771 * 120.00032 * 359.72697 * 11 10 9 14 14 C 1.46500 * 119.99846 * 179.97438 * 13 11 10 15 15 H 1.09001 * 110.68338 * 37.05485 * 14 13 11 16 16 C 1.54856 * 110.62529 * 160.03665 * 14 13 11 17 17 C 1.55849 * 103.44282 * 118.49233 * 16 14 13 18 18 H 1.09003 * 116.12202 * 159.14845 * 17 16 14 19 19 C 1.55838 * 105.06272 * 288.17166 * 17 16 14 20 20 C 1.54856 * 103.44338 * 71.82876 * 19 17 16 21 21 C 1.55838 * 103.44427 * 359.97438 * 20 19 17 22 22 H 1.09005 * 116.13051 * 159.15092 * 21 20 19 23 23 N 1.50233 * 101.05331 * 32.93794 * 17 16 14 24 24 C 1.36936 * 130.83853 * 126.04783 * 23 17 16 25 25 H 1.08006 * 119.99919 * 179.97438 * 24 23 17 26 26 C 1.38810 * 120.00039 * 359.97438 * 24 23 17 27 27 N 1.31623 * 120.00081 * 359.97438 * 26 24 23 28 28 Si 1.86800 * 119.99946 * 179.97438 * 26 24 23 29 29 H 1.48500 * 109.47211 * 89.99775 * 28 26 24 30 30 H 1.48497 * 109.47088 * 209.99989 * 28 26 24 31 31 H 1.48502 * 109.47424 * 329.99729 * 28 26 24 32 32 H 1.09000 * 109.46515 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46774 * 300.00241 * 1 2 3 34 34 H 1.08997 * 109.47009 * 59.99936 * 1 2 3 35 35 H 1.08995 * 109.47091 * 240.00145 * 2 1 3 36 36 H 1.08996 * 109.47280 * 119.99593 * 2 1 3 37 37 H 1.08995 * 109.46765 * 90.00551 * 7 6 5 38 38 H 1.09007 * 109.46901 * 209.99858 * 7 6 5 39 39 H 1.08998 * 109.47122 * 329.99671 * 7 6 5 40 40 H 1.07996 * 120.27362 * 180.02562 * 8 6 5 41 41 H 1.07998 * 120.82681 * 180.26231 * 9 8 6 42 42 H 0.97003 * 120.00441 * 359.97438 * 13 11 10 43 43 H 1.08998 * 110.62641 * 236.97839 * 16 14 13 44 44 H 1.09004 * 110.62829 * 0.02562 * 16 14 13 45 45 H 1.09001 * 110.62917 * 190.31278 * 19 17 16 46 46 H 1.08997 * 110.63076 * 313.17949 * 19 17 16 47 47 H 1.09000 * 110.62733 * 241.50727 * 20 19 17 48 48 H 1.09005 * 110.62767 * 118.48958 * 20 19 17 49 49 H 0.96999 * 119.99608 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3490 1.5248 -0.0005 5 7 4.1508 0.4734 -0.0005 6 6 5.4635 0.6004 -0.0005 7 6 6.3265 -0.6351 0.0001 8 6 6.0626 1.8475 0.0000 9 6 5.2714 2.9823 -0.0050 10 6 3.8805 2.8230 0.0003 11 6 2.9900 3.9991 0.0003 12 8 1.7835 3.8481 -0.0002 13 7 3.5137 5.2409 0.0008 14 6 2.6293 6.4088 0.0002 15 1 1.7477 6.2244 0.6140 16 6 3.3857 7.6660 0.4956 17 6 3.3268 8.6298 -0.7277 18 1 3.4771 9.6878 -0.5128 19 6 4.2993 8.0120 -1.7771 20 6 3.5429 6.7549 -2.2726 21 6 2.2169 6.7840 -1.4545 22 1 1.3846 6.2148 -1.8687 23 7 1.9950 8.2640 -1.3188 24 6 0.9125 9.0403 -1.6360 25 1 0.0288 8.5871 -2.0606 26 6 0.9509 10.4096 -1.4120 27 7 2.0276 10.9619 -0.8941 28 14 -0.5256 11.4687 -1.8455 29 1 -1.4349 11.5534 -0.6745 30 1 -0.0658 12.8316 -2.2148 31 1 -1.2498 10.8631 -2.9918 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5137 0.8900 37 1 6.5346 -0.9333 -1.0274 38 1 7.2642 -0.4230 0.5139 39 1 5.8050 -1.4423 0.5143 40 1 7.1390 1.9344 -0.0005 41 1 5.7156 3.9667 -0.0089 42 1 4.4762 5.3614 0.0015 43 1 2.8791 8.1051 1.3551 44 1 4.4189 7.4206 0.7413 45 1 4.4687 8.7071 -2.5995 46 1 5.2439 7.7352 -1.3091 47 1 4.1115 5.8520 -2.0497 48 1 3.3373 6.8265 -3.3406 49 1 2.0541 11.9187 -0.7372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096261519.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:46 Heat of formation + Delta-G solvation = 11.768892 kcal Electronic energy + Delta-G solvation = -30965.238688 eV Core-core repulsion = 26894.213724 eV Total energy + Delta-G solvation = -4071.024964 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.08266 -39.74031 -38.29956 -38.03834 -34.03420 -33.26833 -32.49094 -32.13662 -31.07522 -29.33753 -29.02367 -28.33851 -27.19250 -24.35699 -23.95687 -23.25914 -22.43880 -21.41967 -20.60474 -19.48999 -18.70250 -18.39692 -17.55822 -16.92542 -16.69457 -16.45245 -15.37810 -14.99644 -14.80010 -14.74009 -14.55809 -14.34885 -14.16880 -14.04200 -13.73745 -13.18844 -13.17447 -12.79828 -12.63907 -12.44823 -12.29512 -12.22634 -12.06115 -11.73721 -11.59922 -11.46530 -11.02481 -10.88781 -10.86684 -10.83662 -10.81294 -10.19011 -10.12942 -10.09206 -10.06041 -9.81044 -9.50565 -9.33763 -9.20589 -8.91071 -8.65102 -8.39321 -6.88781 -5.70691 -3.08261 0.52876 1.04838 2.86768 2.98366 3.39162 3.42492 3.47020 3.48805 3.76203 3.90095 4.38284 4.47665 4.65278 4.76991 4.87871 4.89902 4.99164 5.15361 5.16912 5.20851 5.23913 5.25803 5.40999 5.52756 5.57209 5.62845 5.65880 5.74435 5.79140 5.84487 5.88272 5.99302 5.99738 6.09985 6.13890 6.16868 6.33433 6.36573 6.56189 6.63191 6.71964 6.85267 6.99856 7.02872 7.15330 7.29873 7.55203 7.56999 7.77617 7.89871 8.19156 8.58080 9.12951 9.75337 10.55972 11.39069 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016699 B = 0.002781 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.318450 B =10066.699376 C =11328.348008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.266 6.266 4 C 0.378 3.622 5 N -0.548 5.548 6 C 0.187 3.813 7 C -0.107 4.107 8 C -0.221 4.221 9 C -0.007 4.007 10 C -0.210 4.210 11 C 0.558 3.442 12 O -0.517 6.517 13 N -0.710 5.710 14 C 0.130 3.870 15 H 0.083 0.917 16 C -0.140 4.140 17 C 0.154 3.846 18 H 0.155 0.845 19 C -0.137 4.137 20 C -0.130 4.130 21 C 0.129 3.871 22 H 0.086 0.914 23 N -0.590 5.590 24 C -0.208 4.208 25 H 0.079 0.921 26 C -0.013 4.013 27 N -0.924 5.924 28 Si 0.917 3.083 29 H -0.289 1.289 30 H -0.291 1.291 31 H -0.282 1.282 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.391 0.609 43 H 0.066 0.934 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.044 0.956 47 H 0.050 0.950 48 H 0.050 0.950 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.114 -21.718 3.093 24.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.170 6.170 4 C 0.198 3.802 5 N -0.274 5.274 6 C 0.050 3.950 7 C -0.165 4.165 8 C -0.242 4.242 9 C -0.033 4.033 10 C -0.216 4.216 11 C 0.343 3.657 12 O -0.393 6.393 13 N -0.362 5.362 14 C 0.025 3.975 15 H 0.101 0.899 16 C -0.180 4.180 17 C 0.047 3.953 18 H 0.172 0.828 19 C -0.176 4.176 20 C -0.169 4.169 21 C 0.020 3.980 22 H 0.104 0.896 23 N -0.310 5.310 24 C -0.336 4.336 25 H 0.097 0.903 26 C -0.208 4.208 27 N -0.573 5.573 28 Si 0.747 3.253 29 H -0.217 1.217 30 H -0.217 1.217 31 H -0.208 1.208 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.160 0.840 41 H 0.163 0.837 42 H 0.226 0.774 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.386 -22.135 3.060 24.236 hybrid contribution 0.254 1.115 -0.253 1.172 sum 9.640 -21.019 2.806 23.294 Atomic orbital electron populations 1.21789 0.92787 1.02420 1.03943 1.22674 0.95265 0.81352 1.02067 1.86570 1.15415 1.29648 1.85412 1.19771 0.84581 0.88332 0.87556 1.67273 1.05971 1.32619 1.21515 1.21141 0.88823 0.95299 0.89784 1.20805 0.97972 0.94189 1.03486 1.21703 1.01496 0.92228 1.08725 1.21652 0.91293 0.99855 0.90457 1.20170 0.94279 0.92722 1.14424 1.17724 0.87792 0.82573 0.77621 1.90830 1.14107 1.85712 1.48648 1.46117 1.09895 1.05506 1.74638 1.22616 0.92523 0.82916 0.99485 0.89908 1.23290 0.97671 0.95995 1.01047 1.23766 0.83469 0.99991 0.88076 0.82846 1.23054 0.97171 0.96937 1.00478 1.22894 0.97776 0.96916 0.99347 1.23193 0.94836 0.87117 0.92891 0.89637 1.46490 1.13089 1.00048 1.71420 1.19074 0.91969 0.88611 1.33939 0.90309 1.24690 0.97890 0.96344 1.01895 1.69435 1.27169 1.10465 1.50224 0.86026 0.81551 0.79703 0.77972 1.21666 1.21715 1.20777 0.90558 0.91440 0.91368 0.91764 0.91805 0.89864 0.90155 0.90279 0.84028 0.83745 0.77427 0.91548 0.92802 0.92686 0.93720 0.93162 0.93101 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 37.16 0.38 -1.13 16 2 C 0.06 0.71 6.03 37.16 0.22 0.94 16 3 O -0.27 -4.15 8.22 -39.74 -0.33 -4.48 16 4 C 0.38 5.50 7.51 -16.62 -0.12 5.38 16 5 N -0.55 -6.78 9.11 -9.21 -0.08 -6.86 16 6 C 0.19 1.80 6.78 -82.53 -0.56 1.24 16 7 C -0.11 -0.63 10.16 36.01 0.37 -0.26 16 8 C -0.22 -1.89 9.71 -39.50 -0.38 -2.27 16 9 C -0.01 -0.07 9.64 -38.88 -0.37 -0.44 16 10 C -0.21 -2.94 5.90 -104.69 -0.62 -3.56 16 11 C 0.56 9.43 7.77 -12.48 -0.10 9.33 16 12 O -0.52 -10.79 14.92 -16.48 -0.25 -11.04 16 13 N -0.71 -10.96 3.59 -52.47 -0.19 -11.15 16 14 C 0.13 2.49 3.07 -65.46 -0.20 2.29 16 15 H 0.08 1.79 7.71 -51.93 -0.40 1.39 16 16 C -0.14 -2.66 6.20 -24.23 -0.15 -2.81 16 17 C 0.15 3.46 4.72 -62.81 -0.30 3.16 16 18 H 0.15 3.94 5.52 -51.93 -0.29 3.66 16 19 C -0.14 -2.63 6.44 -24.24 -0.16 -2.79 16 20 C -0.13 -2.44 6.33 -24.24 -0.15 -2.59 16 21 C 0.13 2.76 5.34 -62.82 -0.34 2.43 16 22 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 23 N -0.59 -14.84 2.99 -145.83 -0.44 -15.28 16 24 C -0.21 -5.79 10.59 -15.06 -0.16 -5.95 16 25 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 26 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 27 N -0.92 -26.28 10.47 55.49 0.58 -25.70 16 28 Si 0.92 22.21 29.55 -169.99 -5.02 17.19 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 31 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.30 8.07 -51.92 -0.42 -0.12 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.14 1.09 6.52 -52.49 -0.34 0.74 16 42 H 0.39 4.83 6.12 -40.82 -0.25 4.58 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 44 H 0.05 0.84 7.34 -51.93 -0.38 0.46 16 45 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.04 0.71 7.82 -51.93 -0.41 0.31 16 47 H 0.05 0.81 6.48 -51.93 -0.34 0.48 16 48 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 391.39 15.07 5.90 5.90 Total: -1.00 -33.30 391.39 -10.00 -43.30 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.44 Total: 5.63 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -2.73 Total: 2.49 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -0.13 Total: -58.99 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.57 Total: -15.52 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.30 -10.00 -43.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096261519.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.066 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds