Wall clock time and date at job start Wed Apr 1 2020 05:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42905 * 109.47140 * 2 1 4 4 C 1.35426 * 117.00069 * 180.02562 * 3 2 1 5 5 N 1.32228 * 119.80059 * 359.97431 * 4 3 2 6 6 C 1.31883 * 121.80336 * 180.02562 * 5 4 3 7 7 C 1.50700 * 119.40821 * 179.97438 * 6 5 4 8 8 C 1.38352 * 121.18405 * 0.02562 * 6 5 4 9 9 C 1.38344 * 119.45833 * 359.74128 * 8 6 5 10 10 C 1.39997 * 118.34621 * 0.49404 * 9 8 6 11 11 C 1.47524 * 120.59490 * 179.77961 * 10 9 8 12 12 O 1.21586 * 119.99538 * 179.72097 * 11 10 9 13 13 N 1.34771 * 120.00032 * 359.72697 * 11 10 9 14 14 C 1.46500 * 119.99846 * 179.97438 * 13 11 10 15 15 H 1.09001 * 110.68338 * 37.05485 * 14 13 11 16 16 C 1.54856 * 110.62529 * 160.03665 * 14 13 11 17 17 C 1.55849 * 103.44282 * 118.49233 * 16 14 13 18 18 H 1.09003 * 116.12202 * 159.14845 * 17 16 14 19 19 C 1.55838 * 105.06272 * 288.17166 * 17 16 14 20 20 C 1.54856 * 103.44338 * 71.82876 * 19 17 16 21 21 C 1.55838 * 103.44427 * 359.97438 * 20 19 17 22 22 H 1.09005 * 116.13051 * 159.15092 * 21 20 19 23 23 N 1.50233 * 101.05331 * 32.93794 * 17 16 14 24 24 C 1.36936 * 130.83853 * 126.04783 * 23 17 16 25 25 H 1.08006 * 119.99919 * 179.97438 * 24 23 17 26 26 C 1.38810 * 120.00039 * 359.97438 * 24 23 17 27 27 N 1.31623 * 120.00081 * 359.97438 * 26 24 23 28 28 Si 1.86800 * 119.99946 * 179.97438 * 26 24 23 29 29 H 1.48500 * 109.47211 * 89.99775 * 28 26 24 30 30 H 1.48497 * 109.47088 * 209.99989 * 28 26 24 31 31 H 1.48502 * 109.47424 * 329.99729 * 28 26 24 32 32 H 1.09000 * 109.46515 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46774 * 300.00241 * 1 2 3 34 34 H 1.08997 * 109.47009 * 59.99936 * 1 2 3 35 35 H 1.08995 * 109.47091 * 240.00145 * 2 1 3 36 36 H 1.08996 * 109.47280 * 119.99593 * 2 1 3 37 37 H 1.08995 * 109.46765 * 90.00551 * 7 6 5 38 38 H 1.09007 * 109.46901 * 209.99858 * 7 6 5 39 39 H 1.08998 * 109.47122 * 329.99671 * 7 6 5 40 40 H 1.07996 * 120.27362 * 180.02562 * 8 6 5 41 41 H 1.07998 * 120.82681 * 180.26231 * 9 8 6 42 42 H 0.97003 * 120.00441 * 359.97438 * 13 11 10 43 43 H 1.08998 * 110.62641 * 236.97839 * 16 14 13 44 44 H 1.09004 * 110.62829 * 0.02562 * 16 14 13 45 45 H 1.09001 * 110.62917 * 190.31278 * 19 17 16 46 46 H 1.08997 * 110.63076 * 313.17949 * 19 17 16 47 47 H 1.09000 * 110.62733 * 241.50727 * 20 19 17 48 48 H 1.09005 * 110.62767 * 118.48958 * 20 19 17 49 49 H 0.96999 * 119.99608 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3490 1.5248 -0.0005 5 7 4.1508 0.4734 -0.0005 6 6 5.4635 0.6004 -0.0005 7 6 6.3265 -0.6351 0.0001 8 6 6.0626 1.8475 0.0000 9 6 5.2714 2.9823 -0.0050 10 6 3.8805 2.8230 0.0003 11 6 2.9900 3.9991 0.0003 12 8 1.7835 3.8481 -0.0002 13 7 3.5137 5.2409 0.0008 14 6 2.6293 6.4088 0.0002 15 1 1.7477 6.2244 0.6140 16 6 3.3857 7.6660 0.4956 17 6 3.3268 8.6298 -0.7277 18 1 3.4771 9.6878 -0.5128 19 6 4.2993 8.0120 -1.7771 20 6 3.5429 6.7549 -2.2726 21 6 2.2169 6.7840 -1.4545 22 1 1.3846 6.2148 -1.8687 23 7 1.9950 8.2640 -1.3188 24 6 0.9125 9.0403 -1.6360 25 1 0.0288 8.5871 -2.0606 26 6 0.9509 10.4096 -1.4120 27 7 2.0276 10.9619 -0.8941 28 14 -0.5256 11.4687 -1.8455 29 1 -1.4349 11.5534 -0.6745 30 1 -0.0658 12.8316 -2.2148 31 1 -1.2498 10.8631 -2.9918 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5137 0.8900 37 1 6.5346 -0.9333 -1.0274 38 1 7.2642 -0.4230 0.5139 39 1 5.8050 -1.4423 0.5143 40 1 7.1390 1.9344 -0.0005 41 1 5.7156 3.9667 -0.0089 42 1 4.4762 5.3614 0.0015 43 1 2.8791 8.1051 1.3551 44 1 4.4189 7.4206 0.7413 45 1 4.4687 8.7071 -2.5995 46 1 5.2439 7.7352 -1.3091 47 1 4.1115 5.8520 -2.0497 48 1 3.3373 6.8265 -3.3406 49 1 2.0541 11.9187 -0.7372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096261519.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:45 Heat of formation + Delta-G solvation = -9.408707 kcal Electronic energy + Delta-G solvation = -30966.157018 eV Core-core repulsion = 26894.213724 eV Total energy + Delta-G solvation = -4071.943294 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.06297 -41.19846 -39.49996 -39.18788 -35.52401 -34.49679 -33.86824 -33.19513 -31.87863 -31.01121 -30.73949 -29.54055 -28.44700 -26.17982 -24.90273 -24.21504 -23.30336 -22.87219 -21.96784 -21.19282 -20.20615 -19.46993 -19.01449 -18.37404 -17.78575 -17.40620 -16.88220 -16.61327 -16.39696 -15.90090 -15.59225 -15.49212 -15.40440 -15.04513 -15.02558 -14.23986 -14.07333 -13.95706 -13.83583 -13.53049 -13.44791 -13.30171 -13.21855 -12.98806 -12.90512 -12.81223 -12.78428 -12.60847 -12.46596 -12.36237 -11.99838 -11.90667 -11.68793 -11.55355 -11.23894 -11.08713 -11.01864 -10.93654 -10.78355 -10.57977 -10.00537 -9.43934 -8.85398 -7.80033 -5.19011 -0.34308 0.25709 1.45421 1.46876 1.54915 1.89092 2.00173 2.13065 2.49856 2.78297 3.12456 3.33305 3.51361 3.70673 3.76179 3.89482 3.96986 4.02714 4.10547 4.12950 4.15131 4.24701 4.34116 4.39771 4.43822 4.48791 4.61608 4.71052 4.72334 4.79141 4.81049 4.83904 4.88289 4.95511 4.97879 5.02917 5.06851 5.15542 5.17249 5.18821 5.23684 5.32788 5.46437 5.51990 5.55646 5.75952 5.89626 6.25419 6.28407 6.61327 6.78868 7.06008 7.33121 7.68628 8.55050 9.26823 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016699 B = 0.002781 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.318450 B =10066.699376 C =11328.348008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.060 3.940 3 O -0.301 6.301 4 C 0.354 3.646 5 N -0.561 5.561 6 C 0.181 3.819 7 C -0.105 4.105 8 C -0.207 4.207 9 C 0.002 3.998 10 C -0.239 4.239 11 C 0.557 3.443 12 O -0.569 6.569 13 N -0.693 5.693 14 C 0.149 3.851 15 H 0.049 0.951 16 C -0.124 4.124 17 C 0.138 3.862 18 H 0.123 0.877 19 C -0.124 4.124 20 C -0.115 4.115 21 C 0.117 3.883 22 H 0.059 0.941 23 N -0.618 5.618 24 C -0.226 4.226 25 H 0.068 0.932 26 C -0.062 4.062 27 N -0.942 5.942 28 Si 0.975 3.025 29 H -0.289 1.289 30 H -0.289 1.289 31 H -0.278 1.278 32 H 0.107 0.893 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.186 0.814 41 H 0.177 0.823 42 H 0.412 0.588 43 H 0.047 0.953 44 H 0.101 0.899 45 H 0.036 0.964 46 H 0.092 0.908 47 H 0.085 0.915 48 H 0.039 0.961 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.983 -23.591 3.270 28.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.015 4.015 3 O -0.207 6.207 4 C 0.174 3.826 5 N -0.287 5.287 6 C 0.044 3.956 7 C -0.162 4.162 8 C -0.227 4.227 9 C -0.024 4.024 10 C -0.245 4.245 11 C 0.345 3.655 12 O -0.448 6.448 13 N -0.346 5.346 14 C 0.042 3.958 15 H 0.067 0.933 16 C -0.164 4.164 17 C 0.032 3.968 18 H 0.140 0.860 19 C -0.163 4.163 20 C -0.155 4.155 21 C 0.009 3.991 22 H 0.078 0.922 23 N -0.340 5.340 24 C -0.355 4.355 25 H 0.086 0.914 26 C -0.254 4.254 27 N -0.592 5.592 28 Si 0.804 3.196 29 H -0.217 1.217 30 H -0.215 1.215 31 H -0.203 1.203 32 H 0.126 0.874 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.128 0.872 39 H 0.093 0.907 40 H 0.203 0.797 41 H 0.194 0.806 42 H 0.250 0.750 43 H 0.065 0.935 44 H 0.119 0.881 45 H 0.055 0.945 46 H 0.110 0.890 47 H 0.104 0.896 48 H 0.058 0.942 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 13.319 -24.043 3.238 27.676 hybrid contribution -0.877 1.542 -0.298 1.799 sum 12.443 -22.501 2.940 25.880 Atomic orbital electron populations 1.21814 0.92028 1.04033 1.02632 1.22824 0.95891 0.80311 1.02481 1.86534 1.16764 1.31514 1.85853 1.20034 0.84517 0.89267 0.88752 1.67344 1.07306 1.31905 1.22159 1.21980 0.88200 0.97592 0.87840 1.20948 0.98284 0.92332 1.04637 1.22192 1.03446 0.90886 1.06144 1.22038 0.89403 1.02092 0.88822 1.20018 0.95579 0.91011 1.17919 1.18231 0.87590 0.83482 0.76157 1.90806 1.16640 1.86456 1.50918 1.45774 1.10405 1.04055 1.74363 1.22050 0.92295 0.84362 0.97074 0.93296 1.23123 1.00043 0.94473 0.98735 1.23711 0.83213 0.99426 0.90405 0.86002 1.22947 0.98257 0.96105 0.98987 1.22792 0.96211 0.98338 0.98115 1.23302 0.95627 0.85228 0.94918 0.92229 1.46745 1.13562 1.01545 1.72181 1.19281 0.92842 0.89497 1.33873 0.91440 1.25386 1.00367 0.97242 1.02448 1.69654 1.28325 1.10230 1.50980 0.85120 0.78801 0.78030 0.77619 1.21662 1.21503 1.20324 0.87427 0.92608 0.92727 0.91318 0.91206 0.88549 0.87220 0.90675 0.79666 0.80608 0.74952 0.93461 0.88096 0.94543 0.88955 0.89630 0.94180 0.94056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 10.28 71.98 0.74 -2.32 16 2 C 0.06 1.42 6.03 71.98 0.43 1.86 16 3 O -0.30 -9.83 8.22 -66.39 -0.55 -10.37 16 4 C 0.35 10.24 7.51 85.13 0.64 10.88 16 5 N -0.56 -13.06 9.11 -296.07 -2.70 -15.76 16 6 C 0.18 2.84 6.78 42.58 0.29 3.12 16 7 C -0.11 -0.78 10.16 71.24 0.72 -0.06 16 8 C -0.21 -2.47 9.71 22.32 0.22 -2.26 16 9 C 0.00 0.03 9.64 22.72 0.22 0.25 16 10 C -0.24 -6.38 5.90 -19.91 -0.12 -6.50 16 11 C 0.56 18.77 7.77 86.69 0.67 19.44 16 12 O -0.57 -24.97 14.92 16.83 0.25 -24.72 16 13 N -0.69 -20.14 3.59 -438.18 -1.57 -21.72 16 14 C 0.15 5.72 3.07 46.59 0.14 5.86 16 15 H 0.05 2.22 7.71 -2.39 -0.02 2.20 16 16 C -0.12 -4.57 6.20 32.21 0.20 -4.37 16 17 C 0.14 6.20 4.72 46.23 0.22 6.42 16 18 H 0.12 6.37 5.52 -2.39 -0.01 6.36 16 19 C -0.12 -4.48 6.44 32.21 0.21 -4.27 16 20 C -0.12 -4.15 6.33 32.21 0.20 -3.94 16 21 C 0.12 5.16 5.34 46.20 0.25 5.40 16 22 H 0.06 2.87 8.14 -2.38 -0.02 2.86 16 23 N -0.62 -32.10 2.99 -615.30 -1.84 -33.94 16 24 C -0.23 -13.12 10.59 84.03 0.89 -12.23 16 25 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 26 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 27 N -0.94 -55.01 10.47 21.65 0.23 -54.79 16 28 Si 0.98 46.94 29.55 68.60 2.03 48.97 16 29 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 30 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 31 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 32 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16 36 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16 37 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.11 0.21 8.07 -2.38 -0.02 0.19 16 39 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.19 0.62 8.06 -2.91 -0.02 0.60 16 41 H 0.18 1.58 6.52 -2.91 -0.02 1.56 16 42 H 0.41 8.35 6.12 -92.71 -0.57 7.79 16 43 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.10 2.73 7.34 -2.39 -0.02 2.72 16 45 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.09 2.47 7.82 -2.39 -0.02 2.45 16 47 H 0.09 2.46 6.48 -2.39 -0.02 2.44 16 48 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 49 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -79.86 391.39 2.65 -77.21 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.40 Total: 20.88 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 6.39 Total: 14.23 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -5.88 Total: -126.20 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.29 Total: -35.09 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -79.86 2.65 -77.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096261519.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.803 kcal (2) G-P(sol) polarization free energy of solvation -79.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds