Wall clock time and date at job start Wed Apr 1 2020 05:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.46809 * 2 1 4 4 C 1.35673 * 117.00002 * 179.97438 * 3 2 1 5 5 C 1.38922 * 119.68842 * 179.97438 * 4 3 2 6 6 C 1.38373 * 119.11091 * 180.27946 * 5 4 3 7 7 C 1.38825 * 118.48984 * 359.47769 * 6 5 4 8 8 C 1.38049 * 119.28890 * 0.47844 * 7 6 5 9 9 C 1.50692 * 119.58586 * 179.76867 * 8 7 6 10 10 C 1.50703 * 109.47379 * 125.02312 * 9 8 7 11 11 O 1.21281 * 119.99600 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99974 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99728 * 179.97438 * 12 10 9 14 14 H 1.08999 * 110.56170 * 32.10066 * 13 12 10 15 15 C 1.54852 * 110.62758 * 269.02681 * 13 12 10 16 16 C 1.55852 * 103.44653 * 241.50943 * 15 13 12 17 17 H 1.09000 * 116.12489 * 159.14516 * 16 15 13 18 18 C 1.55847 * 105.06521 * 288.17604 * 16 15 13 19 19 C 1.54852 * 103.44539 * 71.82313 * 18 16 15 20 20 C 1.55845 * 103.44572 * 359.97438 * 19 18 16 21 21 H 1.09002 * 116.12949 * 159.14826 * 20 19 18 22 22 N 1.50242 * 101.05363 * 32.93855 * 20 19 18 23 23 C 1.36936 * 130.84436 * 126.04887 * 22 20 19 24 24 H 1.08005 * 119.99141 * 0.02562 * 23 22 20 25 25 C 1.38805 * 120.00373 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99919 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00182 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46861 * 90.00112 * 27 25 23 29 29 H 1.48494 * 109.47277 * 210.00415 * 27 25 23 30 30 H 1.48498 * 109.47157 * 330.00676 * 27 25 23 31 31 N 1.31966 * 120.82896 * 359.79091 * 8 7 6 32 32 H 1.09001 * 109.46813 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47516 * 300.00417 * 1 2 3 34 34 H 1.09000 * 109.47034 * 60.00679 * 1 2 3 35 35 H 1.08992 * 109.47516 * 239.99583 * 2 1 3 36 36 H 1.09000 * 109.46582 * 119.99606 * 2 1 3 37 37 H 1.08002 * 120.43904 * 359.97438 * 5 4 3 38 38 H 1.08004 * 120.75437 * 179.72383 * 6 5 4 39 39 H 1.07999 * 120.36228 * 180.22810 * 7 6 5 40 40 H 1.09005 * 109.47009 * 245.02210 * 9 8 7 41 41 H 1.09003 * 109.47085 * 5.02203 * 9 8 7 42 42 H 0.97004 * 120.00406 * 0.02562 * 12 10 9 43 43 H 1.09001 * 110.62620 * 0.02562 * 15 13 12 44 44 H 1.09000 * 110.62910 * 123.02372 * 15 13 12 45 45 H 1.08996 * 110.62527 * 190.31394 * 18 16 15 46 46 H 1.08996 * 110.62329 * 313.17550 * 18 16 15 47 47 H 1.08999 * 110.63018 * 241.51298 * 19 18 16 48 48 H 1.08999 * 110.62756 * 118.48503 * 19 18 16 49 49 H 0.96999 * 119.99693 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3513 1.5251 0.0005 5 6 3.8752 2.8117 0.0000 6 6 5.2488 2.9793 -0.0053 7 6 6.0539 1.8483 0.0012 8 6 5.4647 0.5999 0.0026 9 6 6.3322 -0.6322 0.0043 10 6 5.9545 -1.5110 1.1688 11 8 5.0683 -1.1700 1.9234 12 7 6.6014 -2.6758 1.3717 13 6 6.2345 -3.5298 2.5041 14 1 5.1711 -3.4371 2.7248 15 6 7.0860 -3.1802 3.7494 16 6 7.8578 -4.5019 4.0433 17 1 8.7638 -4.4057 4.6417 18 6 6.7835 -5.4825 4.6027 19 6 5.9320 -5.8321 3.3574 20 6 6.6074 -5.0146 2.2154 21 1 6.4140 -5.3589 1.1994 22 7 8.0443 -5.0405 2.6536 23 6 9.1759 -5.4340 1.9904 24 1 9.1077 -5.7997 0.9765 25 6 10.4103 -5.3627 2.6211 26 7 10.4931 -4.9174 3.8570 27 14 11.9538 -5.9001 1.7166 28 1 12.5339 -4.7392 0.9948 29 1 12.9438 -6.4209 2.6932 30 1 11.6105 -6.9673 0.7428 31 7 4.1512 0.4720 0.0020 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5137 -0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 3.2192 3.6697 -0.0012 38 1 5.6846 3.9675 -0.0103 39 1 7.1296 1.9440 0.0010 40 1 6.1868 -1.1803 -0.9267 41 1 7.3784 -0.3398 0.0941 42 1 7.3104 -2.9484 0.7684 43 1 7.7810 -2.3711 3.5245 44 1 6.4455 -2.9145 4.5903 45 1 7.2548 -6.3773 5.0091 46 1 6.1744 -4.9922 5.3620 47 1 4.8987 -5.5144 3.4972 48 1 5.9811 -6.9003 3.1462 49 1 11.3557 -4.8679 4.2979 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097569147.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:51 Heat of formation + Delta-G solvation = 4.541645 kcal Electronic energy + Delta-G solvation = -30553.522347 eV Core-core repulsion = 26482.183986 eV Total energy + Delta-G solvation = -4071.338361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.77720 -39.68170 -38.53777 -37.80719 -33.69736 -33.13481 -32.53283 -32.27798 -31.12635 -29.13326 -29.02226 -28.34877 -27.09924 -24.26557 -24.03925 -22.89659 -22.29003 -21.24551 -19.82807 -19.71491 -18.66927 -18.31109 -17.03810 -16.92541 -16.52664 -16.20434 -16.07171 -15.66482 -14.89789 -14.82489 -14.25553 -14.15180 -14.05727 -13.86092 -13.70079 -13.32915 -13.06005 -12.82320 -12.68638 -12.42921 -12.15826 -12.03258 -11.96793 -11.77301 -11.58921 -11.17863 -11.11967 -10.95017 -10.91887 -10.78096 -10.50187 -10.35483 -10.11699 -9.91248 -9.90435 -9.67070 -9.54560 -9.22746 -9.13205 -8.97517 -8.48581 -8.37711 -6.96052 -5.76217 -3.15378 1.05727 1.26351 2.97068 3.06826 3.34004 3.39541 3.41712 3.51416 3.87994 4.05841 4.38940 4.63676 4.89274 4.91443 4.96842 5.01256 5.09055 5.13253 5.19981 5.30367 5.33956 5.37664 5.38812 5.61729 5.63946 5.67357 5.72175 5.73431 5.81671 5.88376 5.94450 6.06588 6.09613 6.13532 6.15796 6.32394 6.36313 6.43545 6.50971 6.62386 6.76260 6.83526 6.96337 7.16220 7.22525 7.33786 7.45869 7.78254 7.89343 8.06624 8.16157 8.71356 9.05562 9.68772 10.50360 11.32692 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.002716 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.896765 B =10307.052826 C =11491.780473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 O -0.311 6.311 4 C 0.325 3.675 5 C -0.199 4.199 6 C -0.042 4.042 7 C -0.207 4.207 8 C 0.191 3.809 9 C -0.097 4.097 10 C 0.516 3.484 11 O -0.536 6.536 12 N -0.708 5.708 13 C 0.131 3.869 14 H 0.078 0.922 15 C -0.142 4.142 16 C 0.154 3.846 17 H 0.153 0.847 18 C -0.139 4.139 19 C -0.127 4.127 20 C 0.125 3.875 21 H 0.087 0.913 22 N -0.591 5.591 23 C -0.214 4.214 24 H 0.078 0.922 25 C -0.010 4.010 26 N -0.919 5.919 27 Si 0.915 3.085 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.283 1.283 31 N -0.510 5.510 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.402 0.598 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.051 0.949 48 H 0.056 0.944 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.577 11.631 -8.284 19.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.218 6.218 4 C 0.146 3.854 5 C -0.219 4.219 6 C -0.068 4.068 7 C -0.227 4.227 8 C 0.054 3.946 9 C -0.138 4.138 10 C 0.301 3.699 11 O -0.413 6.413 12 N -0.358 5.358 13 C 0.025 3.975 14 H 0.096 0.904 15 C -0.182 4.182 16 C 0.047 3.953 17 H 0.169 0.831 18 C -0.179 4.179 19 C -0.167 4.167 20 C 0.017 3.983 21 H 0.105 0.895 22 N -0.312 5.312 23 C -0.342 4.342 24 H 0.096 0.904 25 C -0.206 4.206 26 N -0.567 5.567 27 Si 0.746 3.254 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.208 1.208 31 N -0.233 5.233 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.156 0.844 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.236 0.764 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.487 11.144 -7.765 19.141 hybrid contribution 1.561 0.172 -0.697 1.718 sum -11.927 11.316 -8.462 18.491 Atomic orbital electron populations 1.21813 0.93257 1.02839 1.02976 1.22593 0.94376 0.80956 1.02970 1.86186 1.16958 1.30865 1.87814 1.19735 0.84043 0.89754 0.91872 1.21016 0.95887 0.95675 1.09344 1.21314 0.92297 0.99236 0.93924 1.21777 1.01409 0.92531 1.07011 1.20211 0.88617 0.93551 0.92237 1.20690 0.99707 0.93552 0.99834 1.20078 0.82202 0.81795 0.85868 1.90688 1.30898 1.72483 1.47237 1.45978 1.38426 1.20574 1.30837 1.22568 0.97901 0.91094 0.85950 0.90399 1.23436 0.98179 1.00692 0.95916 1.23753 0.96258 0.87999 0.87289 0.83052 1.23065 0.98176 1.00686 0.95937 1.22865 0.97306 0.99536 0.97017 1.23163 0.87072 0.91888 0.96212 0.89489 1.46532 0.99717 1.73392 1.11535 1.19001 0.83489 1.35415 0.96288 0.90416 1.24699 0.97426 1.02021 0.96463 1.69467 1.23439 1.52154 1.11663 0.86070 0.82942 0.78079 0.78349 1.21722 1.21735 1.20828 1.67051 1.05824 1.32962 1.17451 0.90341 0.91746 0.91923 0.91839 0.91016 0.84443 0.84211 0.84502 0.87152 0.87104 0.76358 0.92292 0.93009 0.92680 0.93374 0.93050 0.92489 0.93552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.07 0.79 6.03 37.16 0.22 1.02 16 3 O -0.31 -4.19 10.12 -18.72 -0.19 -4.38 16 4 C 0.33 4.58 7.49 -17.12 -0.13 4.46 16 5 C -0.20 -2.26 10.04 -39.28 -0.39 -2.66 16 6 C -0.04 -0.42 10.17 -39.31 -0.40 -0.82 16 7 C -0.21 -2.30 9.71 -39.43 -0.38 -2.68 16 8 C 0.19 2.60 5.76 -82.61 -0.48 2.12 16 9 C -0.10 -1.20 6.10 -29.04 -0.18 -1.38 16 10 C 0.52 8.52 7.76 -10.99 -0.09 8.43 16 11 O -0.54 -10.80 14.98 5.56 0.08 -10.72 16 12 N -0.71 -11.86 5.07 -51.43 -0.26 -12.12 16 13 C 0.13 2.44 2.80 -65.47 -0.18 2.26 16 14 H 0.08 1.49 7.23 -51.93 -0.38 1.12 16 15 C -0.14 -2.90 6.23 -24.23 -0.15 -3.05 16 16 C 0.15 3.47 4.72 -62.81 -0.30 3.17 16 17 H 0.15 3.93 5.52 -51.93 -0.29 3.65 16 18 C -0.14 -2.76 6.44 -24.23 -0.16 -2.91 16 19 C -0.13 -2.31 6.44 -24.24 -0.16 -2.47 16 20 C 0.13 2.41 5.06 -62.83 -0.32 2.09 16 21 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 22 N -0.59 -13.74 2.98 -145.86 -0.44 -14.17 16 23 C -0.21 -5.47 10.59 -15.06 -0.16 -5.63 16 24 H 0.08 1.91 7.83 -52.48 -0.41 1.50 16 25 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 26 N -0.92 -25.42 10.46 55.49 0.58 -24.84 16 27 Si 0.91 21.02 29.55 -169.99 -5.02 16.00 16 28 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 30 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 31 N -0.51 -7.75 8.08 -9.55 -0.08 -7.83 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 37 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.14 1.17 7.94 -52.49 -0.42 0.76 16 40 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.11 1.11 7.86 -51.93 -0.41 0.70 16 42 H 0.40 6.38 8.66 -40.82 -0.35 6.03 16 43 H 0.06 1.29 7.98 -51.93 -0.41 0.88 16 44 H 0.05 1.01 7.82 -51.93 -0.41 0.60 16 45 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.05 0.86 7.82 -51.93 -0.41 0.45 16 47 H 0.05 0.83 7.82 -51.93 -0.41 0.43 16 48 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 397.77 15.07 5.99 5.99 Total: -1.00 -31.71 397.77 -9.95 -41.65 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -7.67 Total: 9.77 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -2.95 Total: 0.64 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.19 Total: -58.96 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.11 Total: -15.10 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.71 -9.95 -41.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097569147.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.195 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds