Wall clock time and date at job start Wed Apr 1 2020 05:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.46809 * 2 1 4 4 C 1.35673 * 117.00002 * 179.97438 * 3 2 1 5 5 C 1.38922 * 119.68842 * 179.97438 * 4 3 2 6 6 C 1.38373 * 119.11091 * 180.27946 * 5 4 3 7 7 C 1.38825 * 118.48984 * 359.47769 * 6 5 4 8 8 C 1.38049 * 119.28890 * 0.47844 * 7 6 5 9 9 C 1.50692 * 119.58586 * 179.76867 * 8 7 6 10 10 C 1.50703 * 109.47379 * 125.02312 * 9 8 7 11 11 O 1.21281 * 119.99600 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99974 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99728 * 179.97438 * 12 10 9 14 14 H 1.08999 * 110.56170 * 32.10066 * 13 12 10 15 15 C 1.54852 * 110.62758 * 269.02681 * 13 12 10 16 16 C 1.55852 * 103.44653 * 241.50943 * 15 13 12 17 17 H 1.09000 * 116.12489 * 159.14516 * 16 15 13 18 18 C 1.55847 * 105.06521 * 288.17604 * 16 15 13 19 19 C 1.54852 * 103.44539 * 71.82313 * 18 16 15 20 20 C 1.55845 * 103.44572 * 359.97438 * 19 18 16 21 21 H 1.09002 * 116.12949 * 159.14826 * 20 19 18 22 22 N 1.50242 * 101.05363 * 32.93855 * 20 19 18 23 23 C 1.36936 * 130.84436 * 126.04887 * 22 20 19 24 24 H 1.08005 * 119.99141 * 0.02562 * 23 22 20 25 25 C 1.38805 * 120.00373 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99919 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00182 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46861 * 90.00112 * 27 25 23 29 29 H 1.48494 * 109.47277 * 210.00415 * 27 25 23 30 30 H 1.48498 * 109.47157 * 330.00676 * 27 25 23 31 31 N 1.31966 * 120.82896 * 359.79091 * 8 7 6 32 32 H 1.09001 * 109.46813 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47516 * 300.00417 * 1 2 3 34 34 H 1.09000 * 109.47034 * 60.00679 * 1 2 3 35 35 H 1.08992 * 109.47516 * 239.99583 * 2 1 3 36 36 H 1.09000 * 109.46582 * 119.99606 * 2 1 3 37 37 H 1.08002 * 120.43904 * 359.97438 * 5 4 3 38 38 H 1.08004 * 120.75437 * 179.72383 * 6 5 4 39 39 H 1.07999 * 120.36228 * 180.22810 * 7 6 5 40 40 H 1.09005 * 109.47009 * 245.02210 * 9 8 7 41 41 H 1.09003 * 109.47085 * 5.02203 * 9 8 7 42 42 H 0.97004 * 120.00406 * 0.02562 * 12 10 9 43 43 H 1.09001 * 110.62620 * 0.02562 * 15 13 12 44 44 H 1.09000 * 110.62910 * 123.02372 * 15 13 12 45 45 H 1.08996 * 110.62527 * 190.31394 * 18 16 15 46 46 H 1.08996 * 110.62329 * 313.17550 * 18 16 15 47 47 H 1.08999 * 110.63018 * 241.51298 * 19 18 16 48 48 H 1.08999 * 110.62756 * 118.48503 * 19 18 16 49 49 H 0.96999 * 119.99693 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3513 1.5251 0.0005 5 6 3.8752 2.8117 0.0000 6 6 5.2488 2.9793 -0.0053 7 6 6.0539 1.8483 0.0012 8 6 5.4647 0.5999 0.0026 9 6 6.3322 -0.6322 0.0043 10 6 5.9545 -1.5110 1.1688 11 8 5.0683 -1.1700 1.9234 12 7 6.6014 -2.6758 1.3717 13 6 6.2345 -3.5298 2.5041 14 1 5.1711 -3.4371 2.7248 15 6 7.0860 -3.1802 3.7494 16 6 7.8578 -4.5019 4.0433 17 1 8.7638 -4.4057 4.6417 18 6 6.7835 -5.4825 4.6027 19 6 5.9320 -5.8321 3.3574 20 6 6.6074 -5.0146 2.2154 21 1 6.4140 -5.3589 1.1994 22 7 8.0443 -5.0405 2.6536 23 6 9.1759 -5.4340 1.9904 24 1 9.1077 -5.7997 0.9765 25 6 10.4103 -5.3627 2.6211 26 7 10.4931 -4.9174 3.8570 27 14 11.9538 -5.9001 1.7166 28 1 12.5339 -4.7392 0.9948 29 1 12.9438 -6.4209 2.6932 30 1 11.6105 -6.9673 0.7428 31 7 4.1512 0.4720 0.0020 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5137 -0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 3.2192 3.6697 -0.0012 38 1 5.6846 3.9675 -0.0103 39 1 7.1296 1.9440 0.0010 40 1 6.1868 -1.1803 -0.9267 41 1 7.3784 -0.3398 0.0941 42 1 7.3104 -2.9484 0.7684 43 1 7.7810 -2.3711 3.5245 44 1 6.4455 -2.9145 4.5903 45 1 7.2548 -6.3773 5.0091 46 1 6.1744 -4.9922 5.3620 47 1 4.8987 -5.5144 3.4972 48 1 5.9811 -6.9003 3.1462 49 1 11.3557 -4.8679 4.2979 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097569147.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:50 Heat of formation + Delta-G solvation = -15.652224 kcal Electronic energy + Delta-G solvation = -30554.398019 eV Core-core repulsion = 26482.183986 eV Total energy + Delta-G solvation = -4072.214033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.74682 -41.13900 -39.86239 -38.87820 -35.20946 -34.39385 -34.04323 -33.14129 -32.06058 -30.95759 -30.48847 -29.72563 -28.36810 -26.09590 -24.95680 -23.91858 -23.27029 -22.55997 -21.50365 -21.11812 -20.27821 -19.26919 -18.82578 -18.11844 -17.61153 -17.23338 -17.03986 -16.87074 -16.70812 -16.11278 -15.77153 -15.42742 -15.21920 -14.98194 -14.91458 -14.58286 -14.24229 -13.91275 -13.71673 -13.65333 -13.42158 -13.38596 -13.00097 -12.89613 -12.86949 -12.76715 -12.73990 -12.60791 -12.44225 -12.09013 -11.95056 -11.89024 -11.70048 -11.68717 -11.18289 -10.93206 -10.91268 -10.80568 -10.65112 -10.44788 -9.87104 -9.39324 -8.84708 -7.73083 -5.13121 0.15342 0.40717 1.51662 1.52805 1.60531 1.78519 2.09657 2.32617 2.52862 2.87529 3.13035 3.40263 3.46585 3.80138 3.96360 4.05095 4.05841 4.07886 4.10331 4.17678 4.21238 4.28413 4.36825 4.43826 4.46310 4.50243 4.51074 4.54246 4.63459 4.70919 4.80109 4.84154 4.85078 4.92058 4.92589 5.04515 5.10032 5.17925 5.18517 5.20220 5.26211 5.38518 5.54205 5.56223 5.62701 5.76513 5.91712 6.28480 6.28971 6.73763 6.97059 7.08407 7.40799 7.75197 8.61140 9.34317 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.002716 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.896765 B =10307.052826 C =11491.780473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.068 3.932 3 O -0.320 6.320 4 C 0.293 3.707 5 C -0.200 4.200 6 C -0.037 4.037 7 C -0.204 4.204 8 C 0.161 3.839 9 C -0.089 4.089 10 C 0.514 3.486 11 O -0.575 6.575 12 N -0.706 5.706 13 C 0.143 3.857 14 H 0.078 0.922 15 C -0.131 4.131 16 C 0.141 3.859 17 H 0.116 0.884 18 C -0.133 4.133 19 C -0.120 4.120 20 C 0.128 3.872 21 H 0.103 0.897 22 N -0.608 5.608 23 C -0.213 4.213 24 H 0.087 0.913 25 C -0.067 4.067 26 N -0.949 5.949 27 Si 0.975 3.025 28 H -0.288 1.288 29 H -0.304 1.304 30 H -0.272 1.272 31 N -0.539 5.539 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.158 0.842 38 H 0.180 0.820 39 H 0.165 0.835 40 H 0.130 0.870 41 H 0.138 0.862 42 H 0.407 0.593 43 H 0.036 0.964 44 H 0.059 0.941 45 H 0.038 0.962 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.060 0.940 49 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.194 12.646 -10.040 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.007 4.007 3 O -0.228 6.228 4 C 0.114 3.886 5 C -0.220 4.220 6 C -0.062 4.062 7 C -0.224 4.224 8 C 0.024 3.976 9 C -0.129 4.129 10 C 0.301 3.699 11 O -0.454 6.454 12 N -0.356 5.356 13 C 0.036 3.964 14 H 0.096 0.904 15 C -0.172 4.172 16 C 0.034 3.966 17 H 0.133 0.867 18 C -0.172 4.172 19 C -0.159 4.159 20 C 0.021 3.979 21 H 0.121 0.879 22 N -0.329 5.329 23 C -0.342 4.342 24 H 0.104 0.896 25 C -0.260 4.260 26 N -0.599 5.599 27 Si 0.805 3.195 28 H -0.215 1.215 29 H -0.231 1.231 30 H -0.197 1.197 31 N -0.263 5.263 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.176 0.824 38 H 0.197 0.803 39 H 0.182 0.818 40 H 0.148 0.852 41 H 0.156 0.844 42 H 0.243 0.757 43 H 0.055 0.945 44 H 0.077 0.923 45 H 0.057 0.943 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.078 0.922 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.123 12.155 -9.557 20.941 hybrid contribution 1.724 -0.094 -0.133 1.732 sum -12.399 12.061 -9.689 19.826 Atomic orbital electron populations 1.21806 0.90682 1.04079 1.03497 1.22607 0.96333 0.80468 1.01298 1.86175 1.17184 1.31326 1.88115 1.20182 0.84176 0.90774 0.93478 1.21396 0.97105 0.95253 1.08288 1.21811 0.91551 1.00746 0.92090 1.22157 1.03005 0.91892 1.05375 1.20542 0.88408 0.94915 0.93731 1.20729 1.00907 0.92728 0.98497 1.20785 0.81164 0.81569 0.86377 1.90672 1.32574 1.73243 1.48949 1.45940 1.38647 1.20715 1.30323 1.22310 0.97278 0.90978 0.85807 0.90411 1.23285 0.97792 0.98815 0.97273 1.23577 0.95994 0.89830 0.87205 0.86660 1.22968 0.97752 0.99353 0.97171 1.22825 0.98192 0.99585 0.95328 1.23347 0.84852 0.92366 0.97375 0.87940 1.46696 1.00868 1.73456 1.11927 1.19363 0.84321 1.33848 0.96622 0.89551 1.25421 1.00077 1.03209 0.97251 1.69723 1.23151 1.53987 1.13018 0.85118 0.79579 0.77764 0.77072 1.21495 1.23082 1.19723 1.66966 1.06868 1.34089 1.18351 0.88738 0.91670 0.90859 0.92366 0.93796 0.82417 0.80289 0.81754 0.85200 0.84402 0.75715 0.94506 0.92277 0.94307 0.91430 0.90418 0.92163 0.94562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 10.28 71.98 0.74 -1.67 16 2 C 0.07 1.68 6.03 71.98 0.43 2.11 16 3 O -0.32 -8.73 10.12 -89.90 -0.91 -9.64 16 4 C 0.29 8.22 7.49 84.79 0.63 8.85 16 5 C -0.20 -4.23 10.04 22.47 0.23 -4.01 16 6 C -0.04 -0.63 10.17 22.44 0.23 -0.40 16 7 C -0.20 -4.00 9.71 22.37 0.22 -3.79 16 8 C 0.16 4.17 5.76 42.49 0.24 4.41 16 9 C -0.09 -2.04 6.10 29.10 0.18 -1.86 16 10 C 0.51 16.57 7.76 87.66 0.68 17.25 16 11 O -0.58 -23.22 14.98 -3.03 -0.05 -23.26 16 12 N -0.71 -22.93 5.07 -435.01 -2.21 -25.14 16 13 C 0.14 5.19 2.80 46.59 0.13 5.32 16 14 H 0.08 2.87 7.23 -2.39 -0.02 2.86 16 15 C -0.13 -5.37 6.23 32.21 0.20 -5.17 16 16 C 0.14 6.43 4.72 46.24 0.22 6.65 16 17 H 0.12 6.24 5.52 -2.39 -0.01 6.23 16 18 C -0.13 -5.20 6.44 32.21 0.21 -4.99 16 19 C -0.12 -4.12 6.44 32.21 0.21 -3.91 16 20 C 0.13 4.72 5.06 46.21 0.23 4.96 16 21 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 22 N -0.61 -28.07 2.98 -615.40 -1.84 -29.91 16 23 C -0.21 -10.80 10.59 84.03 0.89 -9.92 16 24 H 0.09 4.14 7.83 -2.91 -0.02 4.11 16 25 C -0.07 -3.57 5.50 84.86 0.47 -3.10 16 26 N -0.95 -53.98 10.46 21.65 0.23 -53.76 16 27 Si 0.97 43.48 29.55 68.60 2.03 45.51 16 28 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 29 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 30 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 31 N -0.54 -16.37 8.08 -297.00 -2.40 -18.77 16 32 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 36 H 0.04 1.29 8.10 -2.39 -0.02 1.27 16 37 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 38 H 0.18 1.55 8.06 -2.91 -0.02 1.52 16 39 H 0.16 2.20 7.94 -2.91 -0.02 2.18 16 40 H 0.13 2.43 8.14 -2.38 -0.02 2.41 16 41 H 0.14 2.37 7.86 -2.39 -0.02 2.35 16 42 H 0.41 12.38 8.66 -92.71 -0.80 11.58 16 43 H 0.04 1.64 7.98 -2.39 -0.02 1.62 16 44 H 0.06 2.29 7.82 -2.39 -0.02 2.27 16 45 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.07 2.34 7.82 -2.39 -0.02 2.32 16 47 H 0.08 2.29 7.82 -2.39 -0.02 2.27 16 48 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.24 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -71.09 397.77 1.15 -69.94 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: 0.16 Total: 34.29 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 6.14 Total: 10.74 kcal Atomic # 7 Polarization: -121.36 SS G_CDS: -6.21 Total: -127.58 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.95 Total: -32.91 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -71.09 1.15 -69.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097569147.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.289 kcal (2) G-P(sol) polarization free energy of solvation -71.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds