Wall clock time and date at job start Wed Apr 1 2020 05:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47276 * 2 1 4 4 C 1.35423 * 117.00137 * 180.02562 * 3 2 1 5 5 N 1.32240 * 119.80114 * 0.26426 * 4 3 2 6 6 C 1.31881 * 121.80139 * 180.26824 * 5 4 3 7 7 C 1.38350 * 121.18515 * 359.74988 * 6 5 4 8 8 C 1.38342 * 119.45878 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.82451 * 180.02562 * 8 7 6 10 10 C 1.39984 * 118.34775 * 0.02562 * 8 7 6 11 11 C 1.47521 * 120.59776 * 180.02562 * 10 8 7 12 12 O 1.21585 * 120.00281 * 89.99992 * 11 10 8 13 13 N 1.34781 * 120.00044 * 270.00451 * 11 10 8 14 14 C 1.46499 * 120.00115 * 180.02562 * 13 11 10 15 15 H 1.08996 * 110.56150 * 36.43677 * 14 13 11 16 16 C 1.54854 * 110.62455 * 273.54182 * 14 13 11 17 17 C 1.55845 * 103.44376 * 241.51161 * 16 14 13 18 18 H 1.09004 * 115.56130 * 158.81100 * 17 16 14 19 19 C 1.55844 * 105.74033 * 287.98427 * 17 16 14 20 20 C 1.55481 * 103.32318 * 71.92783 * 19 17 16 21 21 C 1.55843 * 103.32873 * 359.97438 * 20 19 17 22 22 H 1.09000 * 116.12700 * 159.23037 * 21 20 19 23 23 N 1.50232 * 101.05329 * 32.93634 * 17 16 14 24 24 C 1.36937 * 130.83785 * 125.28355 * 23 17 16 25 25 H 1.07993 * 120.00060 * 350.75954 * 24 23 17 26 26 C 1.38816 * 119.99964 * 170.76105 * 24 23 17 27 27 N 1.31615 * 119.99940 * 157.54322 * 26 24 23 28 28 Si 1.86802 * 119.99769 * 337.82276 * 26 24 23 29 29 H 1.48495 * 109.47393 * 92.07688 * 28 26 24 30 30 H 1.48507 * 109.46950 * 212.07217 * 28 26 24 31 31 H 1.48494 * 109.47147 * 332.06989 * 28 26 24 32 32 H 1.08999 * 109.47038 * 300.00176 * 1 2 3 33 33 H 1.09006 * 109.47201 * 59.99929 * 1 2 3 34 34 H 1.08997 * 109.47347 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.47038 * 239.99824 * 2 1 3 36 36 H 1.09006 * 109.46773 * 119.99747 * 2 1 3 37 37 H 1.07997 * 119.40591 * 179.72507 * 6 5 4 38 38 H 1.07999 * 120.27349 * 179.97438 * 7 6 5 39 39 H 1.09006 * 109.47296 * 269.97793 * 9 8 7 40 40 H 1.09000 * 109.47449 * 29.97869 * 9 8 7 41 41 H 1.09002 * 109.47229 * 149.98218 * 9 8 7 42 42 H 0.97002 * 119.99930 * 359.97438 * 13 11 10 43 43 H 1.08994 * 110.63029 * 123.01726 * 16 14 13 44 44 H 1.09001 * 110.62408 * 359.97438 * 16 14 13 45 45 H 1.09001 * 110.62605 * 190.50060 * 19 17 16 46 46 H 1.09003 * 110.62919 * 313.52419 * 19 17 16 47 47 H 1.08998 * 110.60930 * 241.58163 * 20 19 17 48 48 H 1.09000 * 110.89274 * 118.55454 * 20 19 17 49 49 H 0.97009 * 119.99673 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5247 -0.0005 5 7 4.1508 0.4732 -0.0063 6 6 5.4635 0.6002 -0.0018 7 6 6.0625 1.8473 0.0041 8 6 5.2713 2.9822 0.0047 9 6 5.8913 4.3557 0.0104 10 6 3.8806 2.8228 -0.0001 11 6 2.9900 3.9989 -0.0003 12 8 2.6264 4.4861 -1.0532 13 7 2.5796 4.5335 1.1669 14 6 1.6947 5.7011 1.1668 15 1 0.9829 5.6419 0.3435 16 6 2.5184 7.0097 1.0825 17 6 2.1615 7.7485 2.4075 18 1 2.8774 8.5035 2.7326 19 6 0.6943 8.2441 2.2332 20 6 -0.1392 6.9345 2.3219 21 6 0.9430 5.8338 2.5364 22 1 0.5947 4.8963 2.9699 23 7 1.9645 6.5876 3.3405 24 6 2.5425 6.3015 4.5485 25 1 3.3768 6.8898 4.9007 26 6 2.0561 5.2552 5.3202 27 7 2.8279 4.6900 6.2242 28 14 0.3086 4.6442 5.0703 29 1 0.3090 3.5318 4.0867 30 1 -0.2364 4.1604 6.3643 31 1 -0.5360 5.7546 4.5617 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5138 0.8901 37 1 6.0819 -0.2852 -0.0023 38 1 7.1390 1.9342 0.0081 39 1 6.0372 4.6842 1.0395 40 1 6.8537 4.3221 -0.5001 41 1 5.2313 5.0544 -0.5038 42 1 2.8694 4.1447 2.0070 43 1 2.2131 7.6007 0.2191 44 1 3.5852 6.7899 1.0413 45 1 0.4227 8.9298 3.0358 46 1 0.5620 8.7180 1.2606 47 1 -0.6828 6.7621 1.3930 48 1 -0.8266 6.9677 3.1671 49 1 2.4881 3.9586 6.7632 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097578017.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:58 Heat of formation + Delta-G solvation = 12.859447 kcal Electronic energy + Delta-G solvation = -32022.847543 eV Core-core repulsion = 27951.869869 eV Total energy + Delta-G solvation = -4070.977674 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.96262 -39.79115 -38.45679 -38.01432 -33.94040 -33.70391 -32.60785 -32.19482 -30.25264 -29.67411 -29.25395 -28.38614 -27.80270 -24.44662 -23.95623 -23.63968 -21.99804 -21.45139 -20.26069 -20.03129 -18.93714 -18.10584 -17.57672 -17.13947 -17.02035 -16.49583 -16.12534 -15.43128 -14.97552 -14.64416 -14.22778 -14.16925 -13.84818 -13.74007 -13.52753 -13.24913 -13.20412 -13.05279 -12.81322 -12.60664 -12.58491 -12.31369 -12.26085 -11.96052 -11.60820 -11.50455 -11.44132 -11.13208 -11.04715 -10.89574 -10.82929 -10.38476 -10.31430 -10.15449 -9.85372 -9.70669 -9.54383 -9.33482 -9.29644 -8.91436 -8.55663 -8.53663 -7.29428 -5.98517 -3.23316 0.89252 1.18527 2.83538 2.93390 3.25206 3.41873 3.44047 3.47669 3.68909 4.21435 4.47634 4.59483 4.61810 4.81950 4.92981 4.93665 4.99300 5.02545 5.10425 5.28210 5.32559 5.36752 5.37576 5.45777 5.56709 5.59673 5.61354 5.68171 5.75320 5.75881 5.80200 5.90558 5.91776 5.93981 5.99603 6.04041 6.15376 6.20204 6.24269 6.34580 6.41972 6.48612 6.66118 6.74416 6.85794 7.03716 7.17997 7.32541 7.71085 7.95714 8.25100 8.55914 8.66327 9.59089 10.19795 11.17607 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009974 B = 0.004482 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.557699 B = 6246.288925 C = 6745.405581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.067 3.933 3 O -0.298 6.298 4 C 0.358 3.642 5 N -0.545 5.545 6 C 0.154 3.846 7 C -0.216 4.216 8 C 0.031 3.969 9 C -0.125 4.125 10 C -0.198 4.198 11 C 0.579 3.421 12 O -0.543 6.543 13 N -0.695 5.695 14 C 0.132 3.868 15 H 0.083 0.917 16 C -0.135 4.135 17 C 0.140 3.860 18 H 0.095 0.905 19 C -0.131 4.131 20 C -0.133 4.133 21 C 0.115 3.885 22 H 0.095 0.905 23 N -0.606 5.606 24 C -0.223 4.223 25 H 0.098 0.902 26 C 0.017 3.983 27 N -0.910 5.910 28 Si 0.864 3.136 29 H -0.289 1.289 30 H -0.304 1.304 31 H -0.260 1.260 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.162 0.838 38 H 0.142 0.858 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.408 0.592 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.069 0.931 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.449 -5.334 -13.281 14.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.008 4.008 3 O -0.204 6.204 4 C 0.179 3.821 5 N -0.270 5.270 6 C -0.002 4.002 7 C -0.236 4.236 8 C 0.023 3.977 9 C -0.182 4.182 10 C -0.204 4.204 11 C 0.363 3.637 12 O -0.421 6.421 13 N -0.343 5.343 14 C 0.026 3.974 15 H 0.101 0.899 16 C -0.175 4.175 17 C 0.033 3.967 18 H 0.113 0.887 19 C -0.171 4.171 20 C -0.173 4.173 21 C 0.008 3.992 22 H 0.113 0.887 23 N -0.328 5.328 24 C -0.350 4.350 25 H 0.115 0.885 26 C -0.181 4.181 27 N -0.555 5.555 28 Si 0.696 3.304 29 H -0.218 1.218 30 H -0.233 1.233 31 H -0.185 1.185 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.180 0.820 38 H 0.160 0.840 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.243 0.757 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.088 0.912 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.663 -5.754 -13.674 14.928 hybrid contribution -0.472 -0.274 0.529 0.760 sum 1.191 -6.028 -13.145 14.510 Atomic orbital electron populations 1.21830 0.92927 1.02788 1.03662 1.22649 0.94954 0.80737 1.02469 1.86261 1.16405 1.30969 1.86774 1.19633 0.84269 0.88419 0.89786 1.67370 1.06632 1.32258 1.20713 1.22508 0.89085 0.97396 0.91164 1.21785 1.01364 0.92422 1.08061 1.20181 0.90425 0.97115 0.89998 1.20960 1.01214 0.91930 1.04064 1.19801 0.94307 0.92526 1.13762 1.17657 0.79685 0.82106 0.84274 1.90750 1.57348 1.62668 1.31357 1.45989 1.48905 1.31187 1.08260 1.22668 0.91570 0.84270 0.98925 0.89873 1.23338 0.99953 0.96203 0.98043 1.22958 0.94599 0.90091 0.89050 0.88711 1.23076 0.97293 0.96600 1.00114 1.23135 0.97564 0.95841 1.00737 1.23564 0.90454 0.95545 0.89665 0.88743 1.46916 1.46738 1.20147 1.19022 1.18638 1.10189 1.13872 0.92257 0.88465 1.24718 0.98005 0.97640 0.97721 1.69830 1.34651 1.24702 1.26309 0.87214 0.88668 0.78819 0.75664 1.21824 1.23261 1.18525 0.91423 0.91571 0.90255 0.91552 0.91401 0.82043 0.83973 0.89125 0.90275 0.90450 0.75668 0.91739 0.91650 0.92085 0.92327 0.92254 0.91246 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.28 37.16 0.38 -1.30 16 2 C 0.07 0.87 6.03 37.16 0.22 1.09 16 3 O -0.30 -5.00 9.57 -17.96 -0.17 -5.17 16 4 C 0.36 5.95 7.51 -16.61 -0.12 5.83 16 5 N -0.55 -7.91 9.21 -12.98 -0.12 -8.03 16 6 C 0.15 1.78 11.17 -17.49 -0.20 1.59 16 7 C -0.22 -2.43 9.79 -39.50 -0.39 -2.82 16 8 C 0.03 0.43 5.95 -103.93 -0.62 -0.19 16 9 C -0.13 -1.51 9.69 36.00 0.35 -1.16 16 10 C -0.20 -3.33 5.66 -104.69 -0.59 -3.92 16 11 C 0.58 10.80 5.42 -12.47 -0.07 10.73 16 12 O -0.54 -11.38 16.82 5.29 0.09 -11.29 16 13 N -0.69 -13.15 5.10 -51.93 -0.27 -13.41 16 14 C 0.13 2.46 2.76 -64.90 -0.18 2.28 16 15 H 0.08 1.55 7.43 -51.93 -0.39 1.16 16 16 C -0.14 -2.31 6.24 -24.23 -0.15 -2.46 16 17 C 0.14 2.55 5.43 -62.80 -0.34 2.21 16 18 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 19 C -0.13 -2.15 6.49 -23.89 -0.16 -2.31 16 20 C -0.13 -2.39 6.28 -23.90 -0.15 -2.54 16 21 C 0.11 2.36 3.19 -62.25 -0.20 2.16 16 22 H 0.10 2.14 3.55 -51.93 -0.18 1.96 16 23 N -0.61 -13.46 2.82 -145.22 -0.41 -13.87 16 24 C -0.22 -5.91 10.93 -15.06 -0.16 -6.07 16 25 H 0.10 2.75 8.06 -52.49 -0.42 2.32 16 26 C 0.02 0.47 5.49 -17.43 -0.10 0.37 16 27 N -0.91 -27.07 13.97 55.49 0.78 -26.29 16 28 Si 0.86 21.46 24.65 -169.99 -4.19 17.27 16 29 H -0.29 -7.11 6.67 56.52 0.38 -6.74 16 30 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 31 H -0.26 -6.13 4.88 56.52 0.28 -5.85 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 36 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 37 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 41 H 0.08 1.06 7.19 -51.93 -0.37 0.68 16 42 H 0.41 8.22 8.62 -40.82 -0.35 7.87 16 43 H 0.06 0.99 7.85 -51.93 -0.41 0.59 16 44 H 0.06 1.14 7.98 -51.93 -0.41 0.73 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.06 0.82 7.85 -51.93 -0.41 0.41 16 47 H 0.06 0.93 7.88 -51.93 -0.41 0.52 16 48 H 0.07 1.32 6.50 -51.93 -0.34 0.98 16 49 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 389.61 15.07 5.87 5.87 Total: -1.00 -32.57 389.61 -8.51 -41.08 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -7.62 Total: 10.35 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -2.47 Total: 3.49 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: -0.02 Total: -61.61 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.08 Total: -16.46 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.19 Total: 17.27 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.57 -8.51 -41.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097578017.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.940 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds