Wall clock time and date at job start Wed Apr 1 2020 05:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47276 * 2 1 4 4 C 1.35423 * 117.00137 * 180.02562 * 3 2 1 5 5 N 1.32240 * 119.80114 * 0.26426 * 4 3 2 6 6 C 1.31881 * 121.80139 * 180.26824 * 5 4 3 7 7 C 1.38350 * 121.18515 * 359.74988 * 6 5 4 8 8 C 1.38342 * 119.45878 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.82451 * 180.02562 * 8 7 6 10 10 C 1.39984 * 118.34775 * 0.02562 * 8 7 6 11 11 C 1.47521 * 120.59776 * 180.02562 * 10 8 7 12 12 O 1.21585 * 120.00281 * 89.99992 * 11 10 8 13 13 N 1.34781 * 120.00044 * 270.00451 * 11 10 8 14 14 C 1.46499 * 120.00115 * 180.02562 * 13 11 10 15 15 H 1.08996 * 110.56150 * 36.43677 * 14 13 11 16 16 C 1.54854 * 110.62455 * 273.54182 * 14 13 11 17 17 C 1.55845 * 103.44376 * 241.51161 * 16 14 13 18 18 H 1.09004 * 115.56130 * 158.81100 * 17 16 14 19 19 C 1.55844 * 105.74033 * 287.98427 * 17 16 14 20 20 C 1.55481 * 103.32318 * 71.92783 * 19 17 16 21 21 C 1.55843 * 103.32873 * 359.97438 * 20 19 17 22 22 H 1.09000 * 116.12700 * 159.23037 * 21 20 19 23 23 N 1.50232 * 101.05329 * 32.93634 * 17 16 14 24 24 C 1.36937 * 130.83785 * 125.28355 * 23 17 16 25 25 H 1.07993 * 120.00060 * 350.75954 * 24 23 17 26 26 C 1.38816 * 119.99964 * 170.76105 * 24 23 17 27 27 N 1.31615 * 119.99940 * 157.54322 * 26 24 23 28 28 Si 1.86802 * 119.99769 * 337.82276 * 26 24 23 29 29 H 1.48495 * 109.47393 * 92.07688 * 28 26 24 30 30 H 1.48507 * 109.46950 * 212.07217 * 28 26 24 31 31 H 1.48494 * 109.47147 * 332.06989 * 28 26 24 32 32 H 1.08999 * 109.47038 * 300.00176 * 1 2 3 33 33 H 1.09006 * 109.47201 * 59.99929 * 1 2 3 34 34 H 1.08997 * 109.47347 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.47038 * 239.99824 * 2 1 3 36 36 H 1.09006 * 109.46773 * 119.99747 * 2 1 3 37 37 H 1.07997 * 119.40591 * 179.72507 * 6 5 4 38 38 H 1.07999 * 120.27349 * 179.97438 * 7 6 5 39 39 H 1.09006 * 109.47296 * 269.97793 * 9 8 7 40 40 H 1.09000 * 109.47449 * 29.97869 * 9 8 7 41 41 H 1.09002 * 109.47229 * 149.98218 * 9 8 7 42 42 H 0.97002 * 119.99930 * 359.97438 * 13 11 10 43 43 H 1.08994 * 110.63029 * 123.01726 * 16 14 13 44 44 H 1.09001 * 110.62408 * 359.97438 * 16 14 13 45 45 H 1.09001 * 110.62605 * 190.50060 * 19 17 16 46 46 H 1.09003 * 110.62919 * 313.52419 * 19 17 16 47 47 H 1.08998 * 110.60930 * 241.58163 * 20 19 17 48 48 H 1.09000 * 110.89274 * 118.55454 * 20 19 17 49 49 H 0.97009 * 119.99673 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5247 -0.0005 5 7 4.1508 0.4732 -0.0063 6 6 5.4635 0.6002 -0.0018 7 6 6.0625 1.8473 0.0041 8 6 5.2713 2.9822 0.0047 9 6 5.8913 4.3557 0.0104 10 6 3.8806 2.8228 -0.0001 11 6 2.9900 3.9989 -0.0003 12 8 2.6264 4.4861 -1.0532 13 7 2.5796 4.5335 1.1669 14 6 1.6947 5.7011 1.1668 15 1 0.9829 5.6419 0.3435 16 6 2.5184 7.0097 1.0825 17 6 2.1615 7.7485 2.4075 18 1 2.8774 8.5035 2.7326 19 6 0.6943 8.2441 2.2332 20 6 -0.1392 6.9345 2.3219 21 6 0.9430 5.8338 2.5364 22 1 0.5947 4.8963 2.9699 23 7 1.9645 6.5876 3.3405 24 6 2.5425 6.3015 4.5485 25 1 3.3768 6.8898 4.9007 26 6 2.0561 5.2552 5.3202 27 7 2.8279 4.6900 6.2242 28 14 0.3086 4.6442 5.0703 29 1 0.3090 3.5318 4.0867 30 1 -0.2364 4.1604 6.3643 31 1 -0.5360 5.7546 4.5617 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5138 0.8901 37 1 6.0819 -0.2852 -0.0023 38 1 7.1390 1.9342 0.0081 39 1 6.0372 4.6842 1.0395 40 1 6.8537 4.3221 -0.5001 41 1 5.2313 5.0544 -0.5038 42 1 2.8694 4.1447 2.0070 43 1 2.2131 7.6007 0.2191 44 1 3.5852 6.7899 1.0413 45 1 0.4227 8.9298 3.0358 46 1 0.5620 8.7180 1.2606 47 1 -0.6828 6.7621 1.3930 48 1 -0.8266 6.9677 3.1671 49 1 2.4881 3.9586 6.7632 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097578017.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:55 Heat of formation + Delta-G solvation = -10.445496 kcal Electronic energy + Delta-G solvation = -32023.858121 eV Core-core repulsion = 27951.869869 eV Total energy + Delta-G solvation = -4071.988252 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.12139 -41.24681 -39.83542 -39.17526 -35.32859 -34.93588 -34.56625 -33.19878 -31.52012 -31.32950 -30.70424 -29.66723 -28.95650 -25.99998 -25.44343 -24.62678 -23.23823 -22.60013 -21.98201 -21.40755 -20.44070 -19.20111 -19.04348 -18.82014 -18.19599 -17.91476 -17.39398 -16.98095 -16.16638 -15.98969 -15.50803 -15.41944 -15.36003 -15.13678 -15.01262 -14.80806 -14.43297 -14.19911 -14.07361 -13.93943 -13.67074 -13.48696 -13.29968 -13.25458 -12.97019 -12.93426 -12.85543 -12.82699 -12.57118 -12.41750 -11.98271 -11.88124 -11.82190 -11.61457 -11.41062 -11.24720 -11.03709 -10.90701 -10.67393 -10.57134 -10.08244 -9.61842 -9.21518 -8.13086 -5.31628 -0.16370 0.14605 1.24281 1.36977 1.43270 1.44415 1.86911 2.15020 2.41666 2.59954 2.92494 3.16689 3.21085 3.63676 3.65158 3.75523 3.81818 3.84320 3.97487 4.03508 4.06317 4.06899 4.25708 4.29726 4.32905 4.39057 4.47105 4.53531 4.54739 4.60990 4.63256 4.70610 4.72947 4.76589 4.79180 4.82773 5.00447 5.06275 5.09606 5.12421 5.18215 5.22574 5.32751 5.40530 5.42279 5.55342 5.61378 6.10981 6.12842 6.42766 6.62574 6.68313 7.07883 7.50339 8.24029 9.06685 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009974 B = 0.004482 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.557699 B = 6246.288925 C = 6745.405581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.325 6.325 4 C 0.337 3.663 5 N -0.555 5.555 6 C 0.156 3.844 7 C -0.203 4.203 8 C 0.020 3.980 9 C -0.120 4.120 10 C -0.234 4.234 11 C 0.586 3.414 12 O -0.571 6.571 13 N -0.698 5.698 14 C 0.135 3.865 15 H 0.088 0.912 16 C -0.123 4.123 17 C 0.136 3.864 18 H 0.103 0.897 19 C -0.120 4.120 20 C -0.131 4.131 21 C 0.105 3.895 22 H 0.071 0.929 23 N -0.624 5.624 24 C -0.196 4.196 25 H 0.071 0.929 26 C -0.039 4.039 27 N -0.958 5.958 28 Si 0.918 3.082 29 H -0.293 1.293 30 H -0.321 1.321 31 H -0.239 1.239 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.206 0.794 38 H 0.184 0.816 39 H 0.085 0.915 40 H 0.113 0.887 41 H 0.056 0.944 42 H 0.399 0.601 43 H 0.091 0.909 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.094 0.906 47 H 0.087 0.913 48 H 0.058 0.942 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.913 -5.181 -15.515 16.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.233 6.233 4 C 0.158 3.842 5 N -0.280 5.280 6 C 0.000 4.000 7 C -0.223 4.223 8 C 0.012 3.988 9 C -0.177 4.177 10 C -0.240 4.240 11 C 0.372 3.628 12 O -0.452 6.452 13 N -0.345 5.345 14 C 0.028 3.972 15 H 0.106 0.894 16 C -0.163 4.163 17 C 0.031 3.969 18 H 0.120 0.880 19 C -0.159 4.159 20 C -0.170 4.170 21 C -0.002 4.002 22 H 0.088 0.912 23 N -0.348 5.348 24 C -0.324 4.324 25 H 0.089 0.911 26 C -0.233 4.233 27 N -0.607 5.607 28 Si 0.751 3.249 29 H -0.222 1.222 30 H -0.251 1.251 31 H -0.163 1.163 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.128 0.872 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.223 0.777 38 H 0.202 0.798 39 H 0.104 0.896 40 H 0.132 0.868 41 H 0.075 0.925 42 H 0.233 0.767 43 H 0.110 0.890 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.113 0.887 47 H 0.106 0.894 48 H 0.076 0.924 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.095 -5.559 -15.966 17.036 hybrid contribution -0.468 -0.333 1.143 1.279 sum 1.626 -5.892 -14.823 16.034 Atomic orbital electron populations 1.21858 0.91533 1.04502 1.02780 1.22860 0.96061 0.79541 1.02734 1.86223 1.17059 1.32946 1.87056 1.19806 0.84533 0.88909 0.90910 1.67453 1.07922 1.31486 1.21094 1.23355 0.88399 0.99309 0.88914 1.22251 1.03161 0.91203 1.05650 1.20546 0.89584 0.98891 0.89780 1.20965 1.02255 0.90561 1.03870 1.19883 0.95442 0.91856 1.16793 1.17905 0.79228 0.82191 0.83476 1.90707 1.58589 1.63798 1.32060 1.46067 1.49017 1.31411 1.08041 1.22669 0.91778 0.85013 0.97704 0.89433 1.23263 0.99253 0.95416 0.98397 1.23235 0.96389 0.89204 0.88103 0.87953 1.23027 0.94804 0.95833 1.02235 1.23139 0.96796 0.95382 1.01715 1.23679 0.91199 0.95311 0.89967 0.91153 1.46979 1.47180 1.22405 1.18189 1.18539 1.08672 1.12028 0.93163 0.91120 1.25193 1.00796 0.98786 0.98499 1.69948 1.36085 1.26165 1.28463 0.86342 0.85345 0.78794 0.74420 1.22213 1.25081 1.16344 0.92880 0.91751 0.87225 0.90675 0.91606 0.77721 0.79833 0.89612 0.86841 0.92534 0.76686 0.89027 0.92468 0.91960 0.88713 0.89405 0.92380 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 10.28 71.98 0.74 -2.46 16 2 C 0.06 1.63 6.03 71.98 0.43 2.06 16 3 O -0.33 -11.25 9.57 -87.19 -0.83 -12.08 16 4 C 0.34 11.31 7.51 85.13 0.64 11.95 16 5 N -0.55 -15.52 9.21 -308.01 -2.84 -18.36 16 6 C 0.16 3.15 11.17 84.71 0.95 4.10 16 7 C -0.20 -3.95 9.79 22.32 0.22 -3.73 16 8 C 0.02 0.53 5.95 -19.42 -0.12 0.41 16 9 C -0.12 -2.75 9.69 71.24 0.69 -2.06 16 10 C -0.23 -7.93 5.66 -19.91 -0.11 -8.04 16 11 C 0.59 22.24 5.42 86.69 0.47 22.71 16 12 O -0.57 -24.15 16.82 -3.98 -0.07 -24.22 16 13 N -0.70 -26.85 5.10 -436.46 -2.23 -29.08 16 14 C 0.13 4.89 2.76 46.96 0.13 5.02 16 15 H 0.09 3.13 7.43 -2.39 -0.02 3.11 16 16 C -0.12 -3.97 6.24 32.21 0.20 -3.77 16 17 C 0.14 4.67 5.43 46.23 0.25 4.92 16 18 H 0.10 3.35 8.14 -2.38 -0.02 3.33 16 19 C -0.12 -3.51 6.49 32.43 0.21 -3.30 16 20 C -0.13 -4.34 6.28 32.43 0.20 -4.13 16 21 C 0.10 4.21 3.19 46.57 0.15 4.35 16 22 H 0.07 3.19 3.55 -2.39 -0.01 3.18 16 23 N -0.62 -27.46 2.82 -613.37 -1.73 -29.19 16 24 C -0.20 -10.57 10.93 84.03 0.92 -9.65 16 25 H 0.07 4.13 8.06 -2.91 -0.02 4.10 16 26 C -0.04 -2.24 5.49 84.86 0.47 -1.78 16 27 N -0.96 -59.28 13.97 21.65 0.30 -58.97 16 28 Si 0.92 45.86 24.65 68.60 1.69 47.55 16 29 H -0.29 -14.58 6.67 99.48 0.66 -13.91 16 30 H -0.32 -16.73 7.11 99.48 0.71 -16.02 16 31 H -0.24 -10.96 4.88 99.48 0.49 -10.47 16 32 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 1.77 8.10 -2.39 -0.02 1.75 16 36 H 0.07 1.69 8.11 -2.38 -0.02 1.67 16 37 H 0.21 2.23 8.06 -2.91 -0.02 2.20 16 38 H 0.18 2.00 8.06 -2.91 -0.02 1.97 16 39 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 40 H 0.11 1.75 8.10 -2.39 -0.02 1.73 16 41 H 0.06 1.53 7.19 -2.39 -0.02 1.51 16 42 H 0.40 16.74 8.62 -92.71 -0.80 15.94 16 43 H 0.09 2.49 7.85 -2.39 -0.02 2.47 16 44 H 0.06 1.94 7.98 -2.39 -0.02 1.92 16 45 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.09 2.15 7.85 -2.39 -0.02 2.13 16 47 H 0.09 2.42 7.88 -2.39 -0.02 2.40 16 48 H 0.06 2.06 6.50 -2.39 -0.02 2.04 16 49 H 0.26 15.39 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -74.69 389.61 0.65 -74.04 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: -0.09 Total: 33.71 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: 6.44 Total: 16.60 kcal Atomic # 7 Polarization: -129.11 SS G_CDS: -6.49 Total: -135.60 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -0.90 Total: -36.30 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.69 Total: 47.55 kcal Total: -74.69 0.65 -74.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097578017.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.596 kcal (2) G-P(sol) polarization free energy of solvation -74.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds