Wall clock time and date at job start Wed Apr 1 2020 05:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42907 * 109.46888 * 2 1 4 4 C 1.35503 * 116.99958 * 180.02562 * 3 2 1 5 5 C 1.39165 * 119.52490 * 179.97438 * 4 3 2 6 6 C 1.37955 * 119.25994 * 179.74215 * 5 4 3 7 7 C 1.40274 * 118.35896 * 0.54060 * 6 5 4 8 8 C 1.47611 * 120.49830 * 179.73178 * 7 6 5 9 9 O 1.21584 * 120.00525 * 359.72342 * 8 7 6 10 10 N 1.34782 * 120.00112 * 179.72056 * 8 7 6 11 11 C 1.46500 * 119.99925 * 180.02562 * 10 8 7 12 12 C 1.54324 * 111.69294 * 298.98575 * 11 10 8 13 13 C 1.55057 * 103.93685 * 261.93199 * 12 11 10 14 14 C 1.55059 * 102.14033 * 319.92403 * 13 12 11 15 15 C 1.54411 * 103.89318 * 40.05509 * 14 13 12 16 16 H 1.09000 * 112.35751 * 97.62018 * 15 14 13 17 17 C 1.53780 * 109.06141 * 222.03925 * 15 14 13 18 18 N 1.47217 * 106.38245 * 94.90003 * 17 15 14 19 19 C 1.36937 * 126.70630 * 211.28344 * 18 17 15 20 20 H 1.07993 * 119.99928 * 180.02562 * 19 18 17 21 21 C 1.38816 * 119.99690 * 359.97438 * 19 18 17 22 22 N 1.31621 * 119.99875 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99790 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.46915 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46746 * 120.00369 * 23 21 19 26 26 H 1.48491 * 109.47123 * 240.00243 * 23 21 19 27 27 C 1.47222 * 106.59320 * 31.28088 * 18 17 15 28 28 C 1.39526 * 119.00525 * 359.45861 * 7 6 5 29 29 N 1.31671 * 120.62413 * 0.27743 * 28 7 6 30 30 H 1.09000 * 109.47437 * 59.99986 * 1 2 3 31 31 H 1.08998 * 109.47159 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47265 * 299.99894 * 1 2 3 33 33 H 1.09001 * 109.47265 * 240.00105 * 2 1 3 34 34 H 1.08994 * 109.47287 * 119.99591 * 2 1 3 35 35 H 1.07998 * 120.36761 * 0.02562 * 5 4 3 36 36 H 1.08009 * 120.81965 * 180.26984 * 6 5 4 37 37 H 0.97006 * 119.99886 * 0.02562 * 10 8 7 38 38 H 1.08995 * 110.53509 * 143.31482 * 12 11 10 39 39 H 1.08999 * 110.65306 * 20.59888 * 12 11 10 40 40 H 1.09002 * 110.90625 * 78.14490 * 13 12 11 41 41 H 1.09003 * 110.90495 * 201.70414 * 13 12 11 42 42 H 1.09001 * 110.53629 * 158.69050 * 14 13 12 43 43 H 1.08997 * 110.53071 * 281.46364 * 14 13 12 44 44 H 1.09000 * 110.07480 * 335.67823 * 17 15 14 45 45 H 1.09001 * 110.12350 * 214.15502 * 17 15 14 46 46 H 0.97002 * 119.99503 * 179.97438 * 22 21 19 47 47 H 1.08997 * 110.07202 * 209.48771 * 27 18 17 48 48 H 1.09002 * 110.06816 * 87.94942 * 27 18 17 49 49 H 1.07996 * 119.68991 * 180.25367 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3496 1.5250 -0.0005 5 6 3.8708 2.8153 -0.0011 6 6 5.2393 2.9898 0.0038 7 6 6.0564 1.8496 -0.0025 8 6 7.5266 1.9816 -0.0037 9 8 8.0380 3.0846 -0.0042 10 7 8.3021 0.8792 -0.0040 11 6 9.7613 1.0102 -0.0046 12 6 10.2668 1.7534 -1.2591 13 6 10.7043 0.6150 -2.2166 14 6 11.3852 -0.3841 -1.2457 15 6 10.4791 -0.3622 0.0044 16 1 9.7696 -1.1896 0.0167 17 6 11.3613 -0.3506 1.2639 18 7 11.5088 1.0611 1.6545 19 6 12.5897 1.6306 2.2730 20 1 12.5823 2.6838 2.5118 21 6 13.6945 0.8538 2.5939 22 7 13.7033 -0.4298 2.3033 23 14 15.1687 1.6305 3.4383 24 1 14.9103 3.0768 3.6542 25 1 15.3951 0.9676 4.7477 26 1 16.3724 1.4643 2.5847 27 6 10.2672 1.7412 1.2502 28 6 5.4586 0.5889 -0.0019 29 7 4.1474 0.4683 -0.0009 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 3.2113 3.6705 -0.0007 36 1 5.6709 3.9799 0.0078 37 1 7.8941 -0.0008 -0.0039 38 1 11.1152 2.3907 -1.0100 39 1 9.4658 2.3422 -1.7060 40 1 9.8399 0.1597 -2.7001 41 1 11.4140 0.9817 -2.9582 42 1 11.4123 -1.3827 -1.6818 43 1 12.3912 -0.0479 -0.9948 44 1 12.3376 -0.7809 1.0409 45 1 10.8794 -0.9118 2.0645 46 1 14.4755 -0.9725 2.5272 47 1 10.4718 2.7862 1.0175 48 1 9.5267 1.6728 2.0471 49 1 6.0772 -0.2964 -0.0025 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098864843.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:47 Heat of formation + Delta-G solvation = -9.200116 kcal Electronic energy + Delta-G solvation = -30568.557540 eV Core-core repulsion = 26496.623292 eV Total energy + Delta-G solvation = -4071.934248 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.10484 -40.10433 -38.62544 -37.61008 -34.44107 -33.60691 -32.77522 -32.40375 -31.45118 -30.47506 -29.30292 -27.63733 -24.89899 -24.62096 -24.54419 -23.99143 -22.57459 -21.32049 -20.54934 -19.67079 -19.02303 -18.82149 -17.61589 -17.15390 -16.73119 -16.66377 -15.61288 -15.20652 -14.90988 -14.74186 -14.45917 -14.30727 -14.20684 -13.89622 -13.64645 -13.48691 -13.33447 -13.14051 -13.02465 -12.80078 -12.71209 -12.50012 -11.94771 -11.85055 -11.31024 -11.11904 -11.02901 -10.91973 -10.66547 -10.57277 -10.31195 -10.25615 -10.22281 -10.15652 -10.01952 -9.92818 -9.89332 -9.68335 -9.44977 -8.89708 -8.72642 -8.58865 -6.84871 -5.63951 -3.07988 0.52149 0.91911 2.62754 2.87581 3.26787 3.40477 3.46670 3.48953 3.69161 3.86739 4.48505 4.53694 4.60844 4.62416 4.64462 4.77285 4.84743 4.96548 5.02525 5.15503 5.26372 5.31727 5.37621 5.43345 5.49943 5.52244 5.65513 5.65973 5.81055 5.87414 5.92082 6.02245 6.04913 6.11947 6.13689 6.25334 6.36013 6.40593 6.57276 6.65079 6.80059 6.84676 6.85964 6.97251 7.12630 7.42489 7.42878 7.64042 7.71308 7.84627 8.36895 8.43755 9.22255 9.82491 10.49523 11.37538 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019256 B = 0.002337 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.732519 B =11976.893698 C =12176.873784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.304 6.304 4 C 0.339 3.661 5 C -0.197 4.197 6 C 0.016 3.984 7 C -0.218 4.218 8 C 0.564 3.436 9 O -0.529 6.529 10 N -0.704 5.704 11 C 0.158 3.842 12 C -0.111 4.111 13 C -0.125 4.125 14 C -0.108 4.108 15 C -0.113 4.113 16 H 0.070 0.930 17 C 0.138 3.862 18 N -0.593 5.593 19 C -0.213 4.213 20 H 0.079 0.921 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.915 3.085 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.140 3.860 28 C 0.177 3.823 29 N -0.544 5.544 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.393 0.607 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.081 0.919 44 H 0.130 0.870 45 H 0.003 0.997 46 H 0.252 0.748 47 H 0.052 0.948 48 H 0.014 0.986 49 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.073 -0.860 -8.629 23.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.211 6.211 4 C 0.160 3.840 5 C -0.218 4.218 6 C -0.010 4.010 7 C -0.224 4.224 8 C 0.350 3.650 9 O -0.406 6.406 10 N -0.355 5.355 11 C 0.071 3.929 12 C -0.149 4.149 13 C -0.163 4.163 14 C -0.145 4.145 15 C -0.134 4.134 16 H 0.088 0.912 17 C 0.012 3.988 18 N -0.317 5.317 19 C -0.341 4.341 20 H 0.097 0.903 21 C -0.208 4.208 22 N -0.572 5.572 23 Si 0.746 3.254 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.013 3.987 28 C 0.019 3.981 29 N -0.267 5.267 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.166 0.834 36 H 0.173 0.827 37 H 0.228 0.772 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.147 0.853 45 H 0.021 0.979 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.032 0.968 49 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -22.075 -0.735 -8.511 23.670 hybrid contribution 0.743 0.376 0.556 1.002 sum -21.332 -0.359 -7.955 22.769 Atomic orbital electron populations 1.21829 0.92901 1.03023 1.03345 1.22668 0.94826 0.80773 1.02829 1.86209 1.16811 1.31080 1.87031 1.20033 0.84033 0.90048 0.89839 1.21051 0.95612 0.95812 1.09313 1.21554 0.91416 0.99658 0.88329 1.20948 0.95129 0.95054 1.11272 1.17810 0.85401 0.84953 0.76833 1.90795 1.74693 1.25612 1.49475 1.45961 1.06961 1.08044 1.74524 1.21863 0.76876 0.97052 0.97085 1.22645 1.00847 0.97141 0.94316 1.22606 0.99378 0.96868 0.97430 1.22448 0.99975 0.98086 0.94012 1.23038 0.97158 0.93794 0.99366 0.91218 1.22052 1.00683 0.86516 0.89512 1.44462 1.13440 1.05038 1.68724 1.19155 0.91916 0.93554 1.29462 0.90295 1.24759 0.98509 0.95755 1.01813 1.69596 1.29865 1.04744 1.52981 0.85973 0.82484 0.78209 0.78741 1.20515 1.21819 1.21757 1.21542 0.89183 0.95936 0.92072 1.22635 0.89193 0.96399 0.89876 1.67322 1.06299 1.32855 1.20265 0.91626 0.90177 0.91600 0.91378 0.91333 0.83449 0.82684 0.77185 0.90293 0.91789 0.92532 0.92134 0.92514 0.90051 0.85266 0.97858 0.93744 0.92943 0.96850 0.81999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.28 37.16 0.38 -0.45 16 2 C 0.06 0.50 6.02 37.16 0.22 0.72 16 3 O -0.30 -3.07 10.10 -18.20 -0.18 -3.25 16 4 C 0.34 3.72 7.49 -16.96 -0.13 3.59 16 5 C -0.20 -1.96 10.02 -39.34 -0.39 -2.35 16 6 C 0.02 0.18 9.70 -38.92 -0.38 -0.20 16 7 C -0.22 -2.67 5.89 -104.83 -0.62 -3.29 16 8 C 0.56 8.52 7.06 -12.43 -0.09 8.44 16 9 O -0.53 -9.74 14.32 5.29 0.08 -9.67 16 10 N -0.70 -10.24 5.16 -46.68 -0.24 -10.48 16 11 C 0.16 2.82 0.95 -129.73 -0.12 2.69 16 12 C -0.11 -1.93 5.49 -24.95 -0.14 -2.07 16 13 C -0.13 -1.89 6.92 -24.56 -0.17 -2.06 16 14 C -0.11 -1.82 6.24 -24.90 -0.16 -1.98 16 15 C -0.11 -2.05 3.70 -88.48 -0.33 -2.37 16 16 H 0.07 1.08 7.76 -51.93 -0.40 0.68 16 17 C 0.14 3.24 5.56 -3.24 -0.02 3.23 16 18 N -0.59 -15.12 3.39 -171.13 -0.58 -15.70 16 19 C -0.21 -5.92 10.34 -15.06 -0.16 -6.07 16 20 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 21 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 22 N -0.92 -26.26 10.08 55.49 0.56 -25.70 16 23 Si 0.92 22.06 29.55 -169.99 -5.02 17.04 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 C 0.14 3.12 5.23 -3.25 -0.02 3.10 16 28 C 0.18 1.90 10.71 -17.14 -0.18 1.71 16 29 N -0.54 -6.12 9.18 -12.96 -0.12 -6.24 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 34 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 35 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.16 1.62 7.73 -52.48 -0.41 1.21 16 37 H 0.39 4.51 6.40 -40.82 -0.26 4.25 16 38 H 0.08 1.55 7.56 -51.93 -0.39 1.16 16 39 H 0.06 1.10 6.68 -51.93 -0.35 0.76 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.08 1.63 7.56 -51.93 -0.39 1.24 16 44 H 0.13 3.38 4.88 -51.93 -0.25 3.13 16 45 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 46 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.05 1.23 7.50 -51.93 -0.39 0.84 16 48 H 0.01 0.32 8.06 -51.93 -0.42 -0.10 16 49 H 0.16 1.34 6.41 -52.49 -0.34 1.00 16 LS Contribution 388.13 15.07 5.85 5.85 Total: -1.00 -32.00 388.13 -9.41 -41.42 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.37 Total: 4.55 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -2.38 Total: 2.17 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.38 Total: -58.11 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.11 Total: -12.92 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.00 -9.41 -41.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098864843.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.215 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds