Wall clock time and date at job start Wed Apr 1 2020 05:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42907 * 109.46888 * 2 1 4 4 C 1.35503 * 116.99958 * 180.02562 * 3 2 1 5 5 C 1.39165 * 119.52490 * 179.97438 * 4 3 2 6 6 C 1.37955 * 119.25994 * 179.74215 * 5 4 3 7 7 C 1.40274 * 118.35896 * 0.54060 * 6 5 4 8 8 C 1.47611 * 120.49830 * 179.73178 * 7 6 5 9 9 O 1.21584 * 120.00525 * 359.72342 * 8 7 6 10 10 N 1.34782 * 120.00112 * 179.72056 * 8 7 6 11 11 C 1.46500 * 119.99925 * 180.02562 * 10 8 7 12 12 C 1.54324 * 111.69294 * 298.98575 * 11 10 8 13 13 C 1.55057 * 103.93685 * 261.93199 * 12 11 10 14 14 C 1.55059 * 102.14033 * 319.92403 * 13 12 11 15 15 C 1.54411 * 103.89318 * 40.05509 * 14 13 12 16 16 H 1.09000 * 112.35751 * 97.62018 * 15 14 13 17 17 C 1.53780 * 109.06141 * 222.03925 * 15 14 13 18 18 N 1.47217 * 106.38245 * 94.90003 * 17 15 14 19 19 C 1.36937 * 126.70630 * 211.28344 * 18 17 15 20 20 H 1.07993 * 119.99928 * 180.02562 * 19 18 17 21 21 C 1.38816 * 119.99690 * 359.97438 * 19 18 17 22 22 N 1.31621 * 119.99875 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99790 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.46915 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46746 * 120.00369 * 23 21 19 26 26 H 1.48491 * 109.47123 * 240.00243 * 23 21 19 27 27 C 1.47222 * 106.59320 * 31.28088 * 18 17 15 28 28 C 1.39526 * 119.00525 * 359.45861 * 7 6 5 29 29 N 1.31671 * 120.62413 * 0.27743 * 28 7 6 30 30 H 1.09000 * 109.47437 * 59.99986 * 1 2 3 31 31 H 1.08998 * 109.47159 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47265 * 299.99894 * 1 2 3 33 33 H 1.09001 * 109.47265 * 240.00105 * 2 1 3 34 34 H 1.08994 * 109.47287 * 119.99591 * 2 1 3 35 35 H 1.07998 * 120.36761 * 0.02562 * 5 4 3 36 36 H 1.08009 * 120.81965 * 180.26984 * 6 5 4 37 37 H 0.97006 * 119.99886 * 0.02562 * 10 8 7 38 38 H 1.08995 * 110.53509 * 143.31482 * 12 11 10 39 39 H 1.08999 * 110.65306 * 20.59888 * 12 11 10 40 40 H 1.09002 * 110.90625 * 78.14490 * 13 12 11 41 41 H 1.09003 * 110.90495 * 201.70414 * 13 12 11 42 42 H 1.09001 * 110.53629 * 158.69050 * 14 13 12 43 43 H 1.08997 * 110.53071 * 281.46364 * 14 13 12 44 44 H 1.09000 * 110.07480 * 335.67823 * 17 15 14 45 45 H 1.09001 * 110.12350 * 214.15502 * 17 15 14 46 46 H 0.97002 * 119.99503 * 179.97438 * 22 21 19 47 47 H 1.08997 * 110.07202 * 209.48771 * 27 18 17 48 48 H 1.09002 * 110.06816 * 87.94942 * 27 18 17 49 49 H 1.07996 * 119.68991 * 180.25367 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3496 1.5250 -0.0005 5 6 3.8708 2.8153 -0.0011 6 6 5.2393 2.9898 0.0038 7 6 6.0564 1.8496 -0.0025 8 6 7.5266 1.9816 -0.0037 9 8 8.0380 3.0846 -0.0042 10 7 8.3021 0.8792 -0.0040 11 6 9.7613 1.0102 -0.0046 12 6 10.2668 1.7534 -1.2591 13 6 10.7043 0.6150 -2.2166 14 6 11.3852 -0.3841 -1.2457 15 6 10.4791 -0.3622 0.0044 16 1 9.7696 -1.1896 0.0167 17 6 11.3613 -0.3506 1.2639 18 7 11.5088 1.0611 1.6545 19 6 12.5897 1.6306 2.2730 20 1 12.5823 2.6838 2.5118 21 6 13.6945 0.8538 2.5939 22 7 13.7033 -0.4298 2.3033 23 14 15.1687 1.6305 3.4383 24 1 14.9103 3.0768 3.6542 25 1 15.3951 0.9676 4.7477 26 1 16.3724 1.4643 2.5847 27 6 10.2672 1.7412 1.2502 28 6 5.4586 0.5889 -0.0019 29 7 4.1474 0.4683 -0.0009 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 3.2113 3.6705 -0.0007 36 1 5.6709 3.9799 0.0078 37 1 7.8941 -0.0008 -0.0039 38 1 11.1152 2.3907 -1.0100 39 1 9.4658 2.3422 -1.7060 40 1 9.8399 0.1597 -2.7001 41 1 11.4140 0.9817 -2.9582 42 1 11.4123 -1.3827 -1.6818 43 1 12.3912 -0.0479 -0.9948 44 1 12.3376 -0.7809 1.0409 45 1 10.8794 -0.9118 2.0645 46 1 14.4755 -0.9725 2.5272 47 1 10.4718 2.7862 1.0175 48 1 9.5267 1.6728 2.0471 49 1 6.0772 -0.2964 -0.0025 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098864843.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:45 Heat of formation + Delta-G solvation = -30.718536 kcal Electronic energy + Delta-G solvation = -30569.490649 eV Core-core repulsion = 26496.623292 eV Total energy + Delta-G solvation = -4072.867357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.07067 -41.34985 -39.76341 -38.67382 -36.24101 -34.88044 -33.64002 -33.45268 -33.02100 -31.46747 -30.79729 -29.26867 -26.45285 -26.27491 -25.31927 -25.19494 -23.29032 -22.60961 -22.23226 -21.01913 -20.37457 -19.67599 -19.17248 -18.40641 -17.95834 -17.36725 -17.08380 -16.69343 -16.25932 -16.00038 -15.63316 -15.42511 -15.32382 -15.04605 -14.98588 -14.82401 -14.69712 -14.47163 -14.26540 -13.86781 -13.57295 -13.31800 -13.30235 -13.08927 -12.83909 -12.75877 -12.50029 -12.16910 -12.07754 -12.02525 -11.85328 -11.74716 -11.70726 -11.63603 -11.57629 -11.41210 -11.12623 -11.08402 -10.75134 -10.63172 -10.11527 -9.63236 -8.90585 -7.76102 -5.23585 -0.37720 0.10349 1.46232 1.46467 1.57115 1.80661 1.90636 2.06385 2.48910 2.74947 3.08865 3.30083 3.44799 3.61151 3.72693 3.77797 3.84876 3.91060 3.95582 4.01012 4.09874 4.20842 4.42049 4.42721 4.46795 4.51095 4.54550 4.62236 4.66891 4.73665 4.81071 4.86894 4.91059 4.96440 4.97357 5.04287 5.05937 5.12057 5.20855 5.24945 5.28523 5.30092 5.43229 5.48986 5.62239 5.72395 5.84269 6.10526 6.39042 6.55016 6.61319 7.10608 7.23332 7.75480 8.42190 9.22559 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019256 B = 0.002337 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.732519 B =11976.893698 C =12176.873784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.059 3.941 3 O -0.310 6.310 4 C 0.334 3.666 5 C -0.193 4.193 6 C 0.013 3.987 7 C -0.232 4.232 8 C 0.566 3.434 9 O -0.568 6.568 10 N -0.694 5.694 11 C 0.172 3.828 12 C -0.108 4.108 13 C -0.110 4.110 14 C -0.104 4.104 15 C -0.101 4.101 16 H 0.108 0.892 17 C 0.139 3.861 18 N -0.612 5.612 19 C -0.236 4.236 20 H 0.072 0.928 21 C -0.060 4.060 22 N -0.941 5.941 23 Si 0.979 3.021 24 H -0.273 1.273 25 H -0.290 1.290 26 H -0.287 1.287 27 C 0.143 3.857 28 C 0.185 3.815 29 N -0.552 5.552 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.170 0.830 36 H 0.156 0.844 37 H 0.412 0.588 38 H 0.046 0.954 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.041 0.959 44 H 0.104 0.896 45 H -0.019 1.019 46 H 0.250 0.750 47 H 0.030 0.970 48 H 0.000 1.000 49 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.118 -1.923 -10.013 26.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.016 4.016 3 O -0.216 6.216 4 C 0.155 3.845 5 C -0.213 4.213 6 C -0.012 4.012 7 C -0.238 4.238 8 C 0.354 3.646 9 O -0.448 6.448 10 N -0.346 5.346 11 C 0.085 3.915 12 C -0.147 4.147 13 C -0.147 4.147 14 C -0.142 4.142 15 C -0.121 4.121 16 H 0.126 0.874 17 C 0.014 3.986 18 N -0.336 5.336 19 C -0.364 4.364 20 H 0.090 0.910 21 C -0.253 4.253 22 N -0.591 5.591 23 Si 0.807 3.193 24 H -0.198 1.198 25 H -0.217 1.217 26 H -0.214 1.214 27 C 0.015 3.985 28 C 0.027 3.973 29 N -0.276 5.276 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.188 0.812 36 H 0.174 0.826 37 H 0.250 0.750 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.060 0.940 44 H 0.122 0.878 45 H -0.001 1.001 46 H 0.060 0.940 47 H 0.048 0.952 48 H 0.018 0.982 49 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -24.174 -1.822 -9.909 26.189 hybrid contribution 1.280 0.727 1.057 1.812 sum -22.894 -1.096 -8.852 24.570 Atomic orbital electron populations 1.21843 0.91039 1.04292 1.03407 1.22879 0.96295 0.79748 1.02690 1.86221 1.16286 1.32476 1.86659 1.20310 0.84501 0.90409 0.89276 1.21236 0.95309 0.96372 1.08406 1.21654 0.91927 0.99552 0.88117 1.20722 0.93131 0.96314 1.13641 1.18204 0.86554 0.84238 0.75570 1.90783 1.75638 1.27110 1.51259 1.45727 1.05339 1.09166 1.74361 1.21459 0.78837 0.96339 0.94896 1.22548 0.99716 0.97702 0.94743 1.22560 1.00539 0.95035 0.96595 1.22361 0.97659 1.00180 0.93966 1.22953 0.97135 0.95019 0.97031 0.87414 1.21929 1.00381 0.85092 0.91247 1.44682 1.13864 1.06228 1.68857 1.19388 0.93217 0.93583 1.30250 0.91048 1.25528 1.00834 0.96360 1.02585 1.69831 1.30265 1.05577 1.53399 0.85006 0.79150 0.77664 0.77485 1.19817 1.21725 1.21357 1.21573 0.87895 0.95265 0.93741 1.22943 0.89272 0.96536 0.88531 1.67393 1.06367 1.33061 1.20730 0.91439 0.88311 0.91631 0.91328 0.91626 0.81237 0.82594 0.74981 0.93549 0.91458 0.89312 0.91036 0.89518 0.93995 0.87835 1.00100 0.94037 0.95180 0.98250 0.79579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 71.98 0.74 -0.54 16 2 C 0.06 0.80 6.02 71.98 0.43 1.23 16 3 O -0.31 -5.64 10.10 -88.05 -0.89 -6.53 16 4 C 0.33 6.66 7.49 84.83 0.64 7.29 16 5 C -0.19 -3.48 10.02 22.43 0.22 -3.25 16 6 C 0.01 0.27 9.70 22.70 0.22 0.49 16 7 C -0.23 -5.34 5.89 -20.00 -0.12 -5.46 16 8 C 0.57 16.65 7.06 86.72 0.61 17.27 16 9 O -0.57 -21.20 14.32 -3.98 -0.06 -21.26 16 10 N -0.69 -19.05 5.16 -419.85 -2.17 -21.21 16 11 C 0.17 6.08 0.95 4.96 0.00 6.08 16 12 C -0.11 -3.73 5.49 31.75 0.17 -3.56 16 13 C -0.11 -3.04 6.92 32.00 0.22 -2.81 16 14 C -0.10 -3.35 6.24 31.78 0.20 -3.15 16 15 C -0.10 -3.54 3.70 -9.41 -0.03 -3.57 16 16 H 0.11 2.97 7.76 -2.39 -0.02 2.95 16 17 C 0.14 6.69 5.56 86.51 0.48 7.17 16 18 N -0.61 -32.55 3.39 -695.33 -2.36 -34.91 16 19 C -0.24 -13.65 10.34 84.03 0.87 -12.79 16 20 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 21 C -0.06 -3.44 5.49 84.86 0.47 -2.98 16 22 N -0.94 -55.05 10.08 21.65 0.22 -54.83 16 23 Si 0.98 46.32 29.55 68.60 2.03 48.35 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 26 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 27 C 0.14 6.59 5.23 86.50 0.45 7.04 16 28 C 0.18 3.53 10.71 85.03 0.91 4.44 16 29 N -0.55 -11.19 9.18 -307.81 -2.82 -14.01 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.93 8.10 -2.39 -0.02 0.91 16 34 H 0.07 0.93 8.10 -2.39 -0.02 0.91 16 35 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.16 3.19 7.73 -2.91 -0.02 3.16 16 37 H 0.41 8.18 6.40 -92.70 -0.59 7.58 16 38 H 0.05 1.88 7.56 -2.39 -0.02 1.86 16 39 H 0.07 2.27 6.68 -2.39 -0.02 2.25 16 40 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.04 1.69 7.56 -2.39 -0.02 1.67 16 44 H 0.10 5.60 4.88 -2.39 -0.01 5.59 16 45 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 46 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 47 H 0.03 1.49 7.50 -2.39 -0.02 1.48 16 48 H 0.00 -0.01 8.06 -2.39 -0.02 -0.03 16 49 H 0.19 2.45 6.41 -2.91 -0.02 2.43 16 Total: -1.00 -72.71 388.13 0.82 -71.89 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.37 Total: 19.59 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 6.49 Total: 12.92 kcal Atomic # 7 Polarization: -117.84 SS G_CDS: -7.13 Total: -124.97 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.95 Total: -27.79 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -72.71 0.82 -71.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098864843.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.176 kcal (2) G-P(sol) polarization free energy of solvation -72.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds